<div dir="ltr">Thanks, Rajeev. That fixed the problem. <br></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Jun 18, 2014 at 12:42 PM, Rajeev Jain <span dir="ltr"><<a href="mailto:jain@mcs.anl.gov" target="_blank">jain@mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div style="color:#000;background-color:#fff;font-family:lucida console,sans-serif;font-size:10pt"><div><span>It seems like #include <time.h> is missing from MBZoltan.hpp.</span></div>
<div style="color:rgb(0,0,0);font-size:13.3333px;font-family:lucida console,sans-serif;background-color:transparent;font-style:normal"><span>Please try adding it. <br></span></div><div style="color:rgb(0,0,0);font-size:13.3333px;font-family:lucida console,sans-serif;background-color:transparent;font-style:normal">
<br><span></span></div><div style="color:rgb(0,0,0);font-size:13.3333px;font-family:lucida console,sans-serif;background-color:transparent;font-style:normal"><span>Rajeev<br></span></div><div><br></div> <div style="font-family:lucida console,sans-serif;font-size:10pt">
<div style="font-family:HelveticaNeue,Helvetica Neue,Helvetica,Arial,Lucida Grande,sans-serif;font-size:12pt"> <div dir="ltr"> <hr size="1"> <font face="Arial"> <b><span style="font-weight:bold">From:</span></b> Saumil Patel <<a href="mailto:saumil.patel134@gmail.com" target="_blank">saumil.patel134@gmail.com</a>><br>
<b><span style="font-weight:bold">To:</span></b> "<a href="mailto:moab-dev@mcs.anl.gov" target="_blank">moab-dev@mcs.anl.gov</a>" <<a href="mailto:moab-dev@mcs.anl.gov" target="_blank">moab-dev@mcs.anl.gov</a>> <br>
<b><span style="font-weight:bold">Sent:</span></b> Wednesday, June 18, 2014 11:18 AM<br> <b><span style="font-weight:bold">Subject:</span></b> [MOAB-dev] Building MOAB from Scratch: Error when I run 'make'<br> </font> </div>
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<div>Dear Moab-Dev Community,<br>
<br>
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I am building MOAB from scratch on a cluster. I am using the following command './configure' command:<br>
<br>
<pre>./configure --with-mpi --with-hdf5=<hdf5-location> --enable-mbzoltan --with-zoltan=<zoltan_dir><br>
<br></pre>
As you can see, I am using MOAB with hdf5 and Zoltan. I am using a PGI compiler. After I am done with the configure, I execute the 'make' command and get the following errors:<br>
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$ make<br>
<br>
<span style="font-family:courier new,monospace">make all-recursive<br>
make[1]: Entering directory `/home/sharedlib/moab-4.6.3'<br>
Making all in src<br>
make[2]: Entering directory `/home/sharedlib/moab-4.6.3/src'<br>
make all-recursive<br>
make[3]: Entering directory `/home/sharedlib/moab-4.6.3/src'<br>
Making all in parallel<br>
make[4]: Entering directory `/home/sharedlib/moab-4.6.3/src/parallel'<br>
make all-am<br>
make[5]: Entering directory `/home/sharedlib/moab-4.6.3/src/parallel'<br>
make[5]: Leaving directory `/home/sharedlib/moab-4.6.3/src/parallel'<br>
make[4]: Leaving directory `/home/sharedlib/moab-4.6.3/src/parallel'<br>
Making all in io<br>
make[4]: Entering directory `/home/sharedlib/moab-4.6.3/src/io'<br>
Making all in mhdf<br>
make[5]: Entering directory `/home/sharedlib/moab-4.6.3/src/io/mhdf'<br>
make[5]: Nothing to be done for `all'.<br>
make[5]: Leaving directory `/home/sharedlib/moab-4.6.3/src/io/mhdf'<br>
Making all in .<br>
make[5]: Entering directory `/home/sharedlib/moab-4.6.3/src/io'<br>
make[5]: Nothing to be done for `all-am'.<br>
make[5]: Leaving directory `/home/sharedlib/moab-4.6.3/src/io'<br>
make[4]: Leaving directory `/home/sharedlib/moab-4.6.3/src/io'<br>
Making all in LocalDiscretization<br>
make[4]: Entering directory `/home/sharedlib/moab-4.6.3/src/LocalDiscretization'<br>
make[4]: Nothing to be done for `all'.<br>
make[4]: Leaving directory `/home/sharedlib/moab-4.6.3/src/LocalDiscretization'<br>
Making all in .<br>
make[4]: Entering directory `/home/sharedlib/moab-4.6.3/src'<br>
\<br>
source='./../tools/mbzoltan/MBZoltan.cpp' object='MBZoltan.lo' libtool=yes \<br>
DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \<br>
/bin/sh ../libtool --tag=CXX --mode=compile mpiCC -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/home/sharedlib/hdf5_parallel_build/hdf5/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64
-DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DHAVE_ZOLTAN -I./parallel -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -I/home/sharedlib/Zoltan_v3.8/ -O2 -DNDEBUG -c -o MBZoltan.lo `test -f './../tools/mbzoltan/MBZoltan.cpp'
|| echo './'`./../tools/mbzoltan/MBZoltan.cpp<br>
libtool: compile: mpiCC -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/home/sharedlib/hdf5_parallel_build/hdf5/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL
-DHAVE_ZOLTAN -I./parallel -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -I/home/sharedlib/Zoltan_v3.8/ -O2 -DNDEBUG -c ./../tools/mbzoltan/MBZoltan.cpp -o MBZoltan.o<br>
"./../tools/mbzoltan/MBZoltan.cpp", line 254: <b>error</b>: identifier "clock_t" is<br>
undefined<br>
clock_t t = clock();<br>
^<br>
<br>
"./../tools/mbzoltan/MBZoltan.cpp", line 254: <b>error</b>: identifier "clock" is<br>
undefined<br>
clock_t t = clock();<br>
^<br>
<br>
"./../tools/mbzoltan/MBZoltan.cpp", line 338: <b>error</b>: identifier<br>
"CLOCKS_PER_SEC" is undefined<br>
std::cout << " time to LB_partition " << (clock() - t) / (double) CLOCKS_PER_SEC << "s. \n";<br>
^<br>
<br>
"./../tools/mbzoltan/MBZoltan.cpp", line 380: <b>error</b>: identifier "clock_t" is<br>
undefined<br>
clock_t t = clock();<br>
^<br>
<br>
"./../tools/mbzoltan/MBZoltan.cpp", line 380: <b>error</b>: identifier "clock" is<br>
undefined<br>
clock_t t = clock();<br>
^<br>
<br>
"./../tools/mbzoltan/MBZoltan.cpp", line 472: <b>error</b>: identifier<br>
"CLOCKS_PER_SEC" is undefined<br>
std::cout << " time to assemble graph: " << (clock() - t) / (double) CLOCKS_PER_SEC << "s. \n";<br>
^<br>
<br>
"./../tools/mbzoltan/MBZoltan.cpp", line 490: <b>error</b>: identifier<br>
"CLOCKS_PER_SEC" is undefined<br>
std::cout << " time to initialize points: " << (clock() - t) / (double) CLOCKS_PER_SEC << "s. \n";<br>
^<br>
<br>
"./../tools/mbzoltan/MBZoltan.cpp", line 592: <b>error</b>: identifier<br>
"CLOCKS_PER_SEC" is undefined<br>
std::cout << " time to LB_partition " << (clock() - t) / (double) CLOCKS_PER_SEC << "s. \n";<br>
^<br>
<br>
"./../tools/mbzoltan/MBZoltan.cpp", line 612: <b>error</b>: identifier<br>
"CLOCKS_PER_SEC" is undefined<br>
std::cout << " time to write partition in memory " <<(clock() - t) / (double) CLOCKS_PER_SEC << "s. \n";<br>
^<br>
<br>
9 <b>errors</b> detected in the compilation of "./../tools/mbzoltan/MBZoltan.cpp".</span><br>
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Has anyone encountered these problems? If so, can you recommend something I can do to fix it? Your help is greatly appreciated.<br>
<br>
</div>
Best,<br>
<br>
</div>
Saumil<br>
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</div><br><br></div> </div></div></div> </div> </div></div></blockquote></div><br></div>