<h1><a href="http://gnep.mcs.anl.gov:8010/">Fathom</a>: <a href="http://gnep.mcs.anl.gov:8010/builders/moab-cub-par-sha">moab-cub-par-sha</a> build <a href="http://gnep.mcs.anl.gov:8010/builders/moab-cub-par-sha/builds/529">#529</a></h1>
<table>
<tr><td><b>Results:</b></td><td>failed shell test install</td></tr>
<tr><td><b>Buildslave:</b></td><td>gnep</td></tr>
<tr><td><b>Revision:</b></td><td>None</td></tr>
</table>
<h2>Log Excerpt</h2>
<pre>make[1]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build'
Making install in src
make[2]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src'
make  install-recursive
make[3]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src'
Making install in parallel
make[4]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src/parallel'
make[5]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src/parallel'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/homes/fathom/install/cubpar/moab-sha/include" || /bin/mkdir -p "/homes/fathom/install/cubpar/moab-sha/include"
 /usr/bin/install -c -m 644  moab_mpi.h moab_mpi_config.h MBParallelConventions.h WriteHDF5Parallel.hpp '/homes/fathom/install/cubpar/moab-sha/include/.'
/bin/mkdir -p '/homes/fathom/install/cubpar/moab-sha/include/moab'
 /usr/bin/install -c -m 644  moab/gs.hpp moab/ParallelComm.hpp moab/ParallelMergeMesh.hpp moab/ProcConfig.hpp moab/ParallelData.hpp '/homes/fathom/install/cubpar/moab-sha/include/moab'
 ...Making install in io
make[4]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src/io'
Making install in mhdf
make[5]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src/io/mhdf'
make[6]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src/io/mhdf'
test -z "/homes/fathom/install/cubpar/moab-sha/bin" || /bin/mkdir -p "/homes/fathom/install/cubpar/moab-sha/bin"
  /bin/sh ../../../libtool   --mode=install /usr/bin/install -c h5minfo h5mvalidate '/homes/fathom/install/cubpar/moab-sha/bin'
libtool: install: /usr/bin/install -c h5minfo /homes/fathom/install/cubpar/moab-sha/bin/h5minfo
libtool: install: /usr/bin/install -c h5mvalidate /homes/fathom/install/cubpar/moab-sha/bin/h5mvalidate
make[6]: Nothing to be done for `install-data-am'.
 ...Making install in .
make[5]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src/io'
make[6]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src/io'
make[6]: Nothing to be done for `install-exec-am'.
test -z "/homes/fathom/install/cubpar/moab-sha/include" || /bin/mkdir -p "/homes/fathom/install/cubpar/moab-sha/include"
/bin/mkdir -p '/homes/fathom/install/cubpar/moab-sha/include/moab'
 /usr/bin/install -c -m 644  moab/ExoIIInterface.hpp '/homes/fathom/install/cubpar/moab-sha/include/moab'
 ...Making install in LocalDiscretization
make[4]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src/LocalDiscretization'
make[5]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src/LocalDiscretization'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/homes/fathom/install/cubpar/moab-sha/include" || /bin/mkdir -p "/homes/fathom/install/cubpar/moab-sha/include"
/bin/mkdir -p '/homes/fathom/install/cubpar/moab-sha/include/moab'
 /usr/bin/install -c -m 644  moab/ElemEvaluator.hpp moab/LinearHex.hpp moab/LinearQuad.hpp moab/LinearTet.hpp moab/LinearTri.hpp moab/QuadraticHex.hpp '/homes/fathom/install/cubpar/moab-sha/include/moab'
 ...Making install in .
make[4]: Entering directory `/disks/itaps-buildslave/moab-cub-par-sha/build/src'
/bin/sh ../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin   -L/homes/iulian/lib/pnetcdf/lib -L/home/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -lnetcdf -L/home/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc -lhdf5_hl -lhdf5 -L/home/fathom/3rdparty/zlib/zlib-1.2.4/gcc -lz     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/l
 ib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o libMOAB.la -rpath /homes/fathom/install/cubpar/moab-sha/lib AdaptiveKDTree.lo AEntityFactory.lo AffineXform.lo AxisBox.lo BitPage.lo BitTag.lo BoundBox.lo BSPTree.lo BSPTreePoly.lo BVHTree.lo CN.lo CartVect.lo Core.lo DebugOutput.lo DenseTag.lo DualTool.lo EntitySequence.lo Factory.lo FBEngine.lo FileOptions.lo GeomUtil.lo GeomTopoTool.lo HigherOrderFactory.lo HomXform.lo LloydSmoother.lo MergeMesh.lo MeshSet.lo MeshSetSequence.lo MeshTag.lo MeshTopoUtil.lo OrientedBox.lo OrientedBoxTreeTool.lo poly.lo findpt.lo errmem.lo tensor.lo PolyElementSeq.lo ProgOptions.lo Range.lo RangeSeqIntersectIter.lo ReadUtil.lo ReaderWriterSet.lo ReorderTool.lo ScdElementData.lo ScdInterface.lo ScdVertexData.lo SequenceData.lo SequenceManager.lo SetIterator.lo Skinner.lo SmoothCurve.lo SmoothFace.lo SparseTag.lo SpatialLocator.lo SpectralMeshTool.lo StructuredElementSeq.lo SweptEl
 ementData.lo SweptElementSeq.lo SweptVertexData.lo SysUtil.lo TagInfo.lo Tree.lo TupleList.lo Types.lo TypeSequenceManager.lo UnstructuredElemSeq.lo Util.lo VarLenDenseTag.lo VarLenSparseTag.lo VertexSequence.lo WriteUtil.lo  parallel/libMOABpar.la io/libmoabio.la LocalDiscretization/libLocalDiscretization.la  -lm
libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.3/crtbeginS.o  .libs/AdaptiveKDTree.o .libs/AEntityFactory.o .libs/AffineXform.o .libs/AxisBox.o .libs/BitPage.o .libs/BitTag.o .libs/BoundBox.o .libs/BSPTree.o .libs/BSPTreePoly.o .libs/BVHTree.o .libs/CN.o .libs/CartVect.o .libs/Core.o .libs/DebugOutput.o .libs/DenseTag.o .libs/DualTool.o .libs/EntitySequence.o .libs/Factory.o .libs/FBEngine.o .libs/FileOptions.o .libs/GeomUtil.o .libs/GeomTopoTool.o .libs/HigherOrderFactory.o .libs/HomXform.o .libs/LloydSmoother.o .libs/MergeMesh.o .libs/MeshSet.o .libs/MeshSetSequence.o .libs/MeshTag.o .libs/MeshTopoUtil.o .libs/OrientedBox.o .libs/OrientedBoxTreeTool.o .libs/poly.o .libs/findpt.o .libs/errmem.o .libs/tensor.o .libs/PolyElementSeq.o .libs/ProgOptions.o .libs/Range.o .libs/RangeSeqIntersectIter.o .libs/ReadUtil.o .libs/ReaderWriterSet.o .libs
 /ReorderTool.o .libs/ScdElementData.o .libs/ScdInterface.o .libs/ScdVertexData.o .libs/SequenceData.o .libs/SequenceManager.o .libs/SetIterator.o .libs/Skinner.o .libs/SmoothCurve.o .libs/SmoothFace.o .libs/SparseTag.o .libs/SpatialLocator.o .libs/SpectralMeshTool.o .libs/StructuredElementSeq.o .libs/SweptElementData.o .libs/SweptElementSeq.o .libs/SweptVertexData.o .libs/SysUtil.o .libs/TagInfo.o .libs/Tree.o .libs/TupleList.o .libs/Types.o .libs/TypeSequenceManager.o .libs/UnstructuredElemSeq.o .libs/Util.o .libs/VarLenDenseTag.o .libs/VarLenSparseTag.o .libs/VertexSequence.o .libs/WriteUtil.o  -Wl,--whole-archive parallel/.libs/libMOABpar.a io/.libs/libmoabio.a LocalDiscretization/.libs/libLocalDiscretization.a -Wl,--no-whole-archive  -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -Wl,-rpath -Wl,/homes/fathom/install/cubp
 ar/cgm-sha/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/iulian/lib/pnetcdf/lib -L/home/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/home/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc -L/home/fathom/3rdparty/zlib/zlib-1.2.4/gcc -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/home/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/home/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/szip/szip-2.1/gcc/lib -lpnetcdf /homes/fathom/install/cubpar/cgm-sha/lib/libcgm.so -lcubiti19 /home/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib/libnetcdf.so /home/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib/libhdf5_hl.so /home
 /fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib/libhdf5.so -lz -L/home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.4.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crtn.o    -Wl,-soname -Wl,libMOAB.so.0 -o .libs/libMOAB.so.0.0.0
/usr/bin/ld: /homes/iulian/lib/pnetcdf/lib/libpnetcdf.a(mpinetcdf.o): relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a shared object; recompile with -fPIC
/homes/iulian/lib/pnetcdf/lib/libpnetcdf.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
</pre>