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Thanks for your replies. <div>Vijay: As you recommended I have added explicitly hdf5-ldflags and every thing went well. However, I have got a couple of errors during "make check" regarding imesh as follows, which I think are not important at this stage. </div><div><div><br></div><div>make[4]: *** [ScdMeshF90] Error 1</div><div>make[4]: Leaving directory `/home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2/itaps/imesh'</div><div>make[3]: *** [check-am] Error 2</div><div>make[3]: Leaving directory `/home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2/itaps/imesh'</div><div>make[2]: *** [check] Error 2</div><div>make[2]: Leaving directory `/home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2/itaps/imesh'</div><div>make[1]: *** [check-recursive] Error 1</div><div>make[1]: Leaving directory `/home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2/itaps'</div><div>make: *** [check-recursive] Error 1</div><div><br></div></div><div>tim: You mentioned that the code should check for the parallel support of HDF5. I couldn't find such thing in the log file, thought, the HDF5 that is linked to MOAB is a parallel one. I uploaded the log file for you.</div><div><br></div><div><br></div><div>Thanks</div><div>Mohsen</div><div><br><div><div>On 3-Feb-14, at 2:20 PM, Vijay S. Mahadevan wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"><p dir="ltr">Mohsen,</p><p dir="ltr">Please attach the config.log file so that we can find out the exact cause of errors. On first look the configure options do look right but it is possible that you may need to provide the library list explicitly with hdf5-ldflags. But we cant suggest any other helpful pointers at the moment without more information on why the configuration failed. </p><p dir="ltr">Vijay</p> <div class="gmail_quot<blockquote class=" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Dear MOAB team,<div><br><div>I am writing to let you know that I intend to use MOAB with "Nek5000" for my simulations which will be performed on the SciNet cluster (<a href="http://wiki.scinethpc.ca/wiki/" target="_blank">http://wiki.scinethpc.ca/wiki/</a>) in collaboration with the University of Toronto, in which I am a post-doc fellow. </div> <div>Right now, I tried to build MOAB with previously built packages on this system including "hdf5" (v. 1.8.7 compiled with openmpi) and "netcdf" (parallel version: 1.2.0 compiled with openmpi). As it is stated both of these packages were compiled with "openmpi" (v. 1.4.4 compiled with intel v. 12.1) and therefore there should be no issue of compilers compatibility. However, when I attempted to build MOAB on this system with the following configuration options and flags: </div> <div><br></div><div><div>./configure FC=mpif90 F77=mpif77 CC=mpicc CXX=mpicxx \</div><div>--prefix=`pwd` \</div><div>--with-mpi=${SCINET_MPI_BASE} \</div><div>--with-netcdf=${SCINET_PNETCDF_BASE} \</div><div>--with-hdf5=${SCINET_HDF5_BASE} \</div> <div>--with-zlib="/scinet/gpc/Libraries/HDF5-1.8.7/zlib-intel/" \<span style="white-space:pre-wrap"> </span></div><div>--with-szip=${SCINET_SZIP_BASE} \<span style="white-space:pre-wrap"> </span></div><div> --enable-mbzoltan \</div><div>--with-zoltan="/home/a/ashgriz/mbehzad/nek5_svn/Zoltan_v3.8/BUILD_DIR/" </div></div><div><br></div><div>I have encountered an error in the configuration as:</div><div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"> <font face="Calisto MT" size="4" style="font:14.0px Calisto MT">"configure: error: HDF5 library not found or not usable." </font></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"> <font face="Calisto MT" size="4" style="font:14.0px Calisto MT">It should be noted that "zlib" and "szip" libraries were compiled with intel too.</font></div></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"> <font face="Calisto MT" size="4" style="font:14.0px Calisto MT"><br></font></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Calisto MT" size="4" style="font:14.0px Calisto MT">I am wondering if you can help me on this issue.</font></div> <div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Calisto MT" size="4" style="font:14.0px Calisto MT"><br></font></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"> <font face="Calisto MT" size="4" style="font:14.0px Calisto MT">Regards,</font></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Times" style="font:normal normal normal 10px/normal Times"><i><br> </i></font></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Times" style="font:normal normal normal 10px/normal Times"><i>Mohsen Behzad, </i></font><span style="font-family:Times;font-size:10px"><i>Ph.D.</i></span></div> <div><span style="text-indent:0px;letter-spacing:normal;font-variant:normal;text-align:auto;font-style:normal;font-weight:normal;line-height:normal;border-collapse:separate;text-transform:none;font-size:medium;white-space:normal;font-family:'Calisto MT';word-spacing:0px"><span style="text-indent:0px;letter-spacing:normal;font-variant:normal;font-style:normal;font-weight:normal;line-height:normal;border-collapse:separate;text-transform:none;font-size:medium;white-space:normal;font-family:'Calisto MT';word-spacing:0px"><div> <div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Times" style="font:normal normal normal 10px/normal Times"><i>Department of Civil Eng.</i></font></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"> <font face="Times" style="font:normal normal normal 10px/normal Times"><i>University of Toronto</i></font></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Times" style="font:normal normal normal 10px/normal Times"><i>Room 117, 170 College st. M5S 3E3</i></font></div> <div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Times" style="font:normal normal normal 10px/normal Times"><i>Toronto, Ontario, Canada</i></font></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"> <font face="Times" color="#001ee6" style="font:normal normal normal 10px/normal Times;color:rgb(0,30,230)"><a href="mailto:m.behzad.jazi@utoronto.ca" target="_blank"><i>m.behzad.jazi@mail.utoronto.ca</i><i></i></a></font></div> <div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Times" color="#001ee6" style="font:normal normal normal 10px/normal Times;color:rgb(0,30,230)"><a href="http://mussl.mie.utoronto.ca/" target="_blank"><i>http://mussl.mie.utoronto.ca</i></a></font><font face="Times" style="font:normal normal normal 10px/normal Times"><i>/</i></font></div> </div></span></span> </div><br></div></div></div></blockquote></div><br></div></body></html>