This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by MOAB configure 4.6.2, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure FC=mpif90 F77=mpif77 CC=mpicc CXX=mpicxx --prefix=/home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2 --with-mpi=/scinet/gpc/intel/impi/4.1.2.040/ --with-pnetcdf=/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel --with-netcdf=/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel --with-hdf5=/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel --with-hdf5-ldflags=-lgpfs --with-zlib=/scinet/gpc/Libraries/HDF5-1.8.11/zlib --with-szip=/scinet/gpc/Libraries/HDF5-1.8.11/szip --enable-mbzoltan --with-zoltan=/home/a/ashgriz/mbehzad/nek5_svn/Zoltan_v3.8/BUILD_DIR/ ## --------- ## ## Platform. ## ## --------- ## hostname = gpc-f101n084 uname -m = x86_64 uname -r = 2.6.32-358.2.1.el6.x86_64 uname -s = Linux uname -v = #1 SMP Wed Mar 13 00:26:49 UTC 2013 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: ~/tecplot_13.1/bin PATH: /scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/bin PATH: /scinet/gpc/intel/itac/8.0.2.003/bin PATH: /scinet/gpc/intel/impi/4.1.2.040//bin64/ PATH: /scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64 PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /usr/lpp/mmfs/bin PATH: /opt/torque/bin PATH: /opt/torque/sbin PATH: /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/bin PATH: /scinet/gpc/Libraries/HDF5-1.8.11/HDFView PATH: /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/bin PATH: /home/a/ashgriz/mbehzad/nek5_svn/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:3230: checking build system type configure:3244: result: x86_64-unknown-linux-gnu configure:3264: checking host system type configure:3277: result: x86_64-unknown-linux-gnu configure:3297: checking target system type configure:3310: result: x86_64-unknown-linux-gnu configure:3353: checking for a BSD-compatible install configure:3421: result: /usr/bin/install -c configure:3432: checking whether build environment is sane configure:3482: result: yes configure:3623: checking for a thread-safe mkdir -p configure:3662: result: /bin/mkdir -p configure:3675: checking for gawk configure:3691: found /bin/gawk configure:3702: result: gawk configure:3713: checking whether make sets $(MAKE) configure:3735: result: yes configure:3818: checking for sed configure:3834: found /bin/sed configure:3846: result: sed configure:3882: checking for style of include used by make configure:3910: result: GNU configure:4039: checking for Fortran 77 compiler version configure:4048: mpif77 --version >&5 ifort (IFORT) 13.1.1 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:4059: $? = 0 configure:4048: mpif77 -v >&5 mpif77 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2013, Intel Corporation. All rights reserved. ifort version 13.1.1 configure:4059: $? = 0 configure:4048: mpif77 -V >&5 GNU ld version 2.20.51.0.2-5.36.el6 20100205 Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.1.163 Build 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o: In function `main': /export/users/nbtester/efi2linux_nightly/branch-13_0gt/20130314_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x38): undefined reference to `MAIN__' configure:4059: $? = 1 configure:4048: mpif77 -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o: In function `main': /export/users/nbtester/efi2linux_nightly/branch-13_0gt/20130314_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x38): undefined reference to `MAIN__' configure:4059: $? = 1 configure:4068: checking whether we are using the GNU Fortran 77 compiler configure:4081: mpif77 -c conftest.F >&5 conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => choke me ---------------^ conftest.F(3): error #6218: This statement is positioned incorrectly and/or has syntax errors. choke me ---------------^ compilation aborted for conftest.F (code 1) configure:4081: $? = 1 configure: failed program was: | program main | #ifndef __GNUC__ | choke me | #endif | | end configure:4090: result: no configure:4096: checking whether mpif77 accepts -g configure:4107: mpif77 -c -g conftest.f >&5 configure:4107: $? = 0 configure: failed program was: | program main | | end configure:4115: result: no configure:4250: checking for Fortran compiler version configure:4259: mpif90 --version >&5 ifort (IFORT) 13.1.1 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:4270: $? = 0 configure:4259: mpif90 -v >&5 mpif90 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2013, Intel Corporation. All rights reserved. ifort version 13.1.1 configure:4270: $? = 0 configure:4259: mpif90 -V >&5 GNU ld version 2.20.51.0.2-5.36.el6 20100205 Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.1.163 Build 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o: In function `main': /export/users/nbtester/efi2linux_nightly/branch-13_0gt/20130314_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x38): undefined reference to `MAIN__' configure:4270: $? = 1 configure:4259: mpif90 -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o: In function `main': /export/users/nbtester/efi2linux_nightly/branch-13_0gt/20130314_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x38): undefined reference to `MAIN__' configure:4270: $? = 1 configure:4279: checking whether we are using the GNU Fortran compiler configure:4292: mpif90 -c conftest.F >&5 conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => choke me ---------------^ conftest.F(3): error #6218: This statement is positioned incorrectly and/or has syntax errors. choke me ---------------^ compilation aborted for conftest.F (code 1) configure:4292: $? = 1 configure: failed program was: | program main | #ifndef __GNUC__ | choke me | #endif | | end configure:4301: result: no configure:4307: checking whether mpif90 accepts -g configure:4318: mpif90 -c -g conftest.f >&5 configure:4318: $? = 0 configure: failed program was: | program main | | end configure:4326: result: no configure:4956: checking for gcc configure:4983: result: mpicc configure:5212: checking for C compiler version configure:5221: mpicc --version >&5 icc (ICC) 13.1.1 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:5232: $? = 0 configure:5221: mpicc -v >&5 mpiicc for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2013, Intel Corporation. All rights reserved. icc version 13.1.1 (gcc version 4.4.7 compatibility) configure:5232: $? = 0 configure:5221: mpicc -V >&5 GNU ld version 2.20.51.0.2-5.36.el6 20100205 Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.1.163 Build 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' configure:5232: $? = 1 configure:5221: mpicc -qversion >&5 icc: command line warning #10006: ignoring unknown option '-qversion' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' configure:5232: $? = 1 configure:5252: checking whether the C compiler works configure:5274: mpicc conftest.c >&5 configure:5278: $? = 0 configure:5326: result: yes configure:5329: checking for C compiler default output file name configure:5331: result: a.out configure:5337: checking for suffix of executables configure:5344: mpicc -o conftest conftest.c >&5 configure:5348: $? = 0 configure:5370: result: configure:5392: checking whether we are cross compiling configure:5400: mpicc -o conftest conftest.c >&5 configure:5404: $? = 0 configure:5411: ./conftest configure:5415: $? = 0 configure:5430: result: no configure:5435: checking for suffix of object files configure:5457: mpicc -c conftest.c >&5 configure:5461: $? = 0 configure:5482: result: o configure:5486: checking whether we are using the GNU C compiler configure:5505: mpicc -c conftest.c >&5 configure:5505: $? = 0 configure:5514: result: yes configure:5523: checking whether mpicc accepts -g configure:5543: mpicc -c -g conftest.c >&5 configure:5543: $? = 0 configure:5584: result: yes configure:5601: checking for mpicc option to accept ISO C89 configure:5665: mpicc -c -g -O2 conftest.c >&5 configure:5665: $? = 0 configure:5678: result: none needed configure:5700: checking dependency style of mpicc configure:5811: result: gcc3 configure:5832: checking how to run the C preprocessor configure:5863: mpicc -E conftest.c configure:5863: $? = 0 configure:5877: mpicc -E conftest.c conftest.c(11): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:5877: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | /* end confdefs.h. */ | #include configure:5902: result: mpicc -E configure:5922: mpicc -E conftest.c configure:5922: $? = 0 configure:5936: mpicc -E conftest.c conftest.c(11): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:5936: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | /* end confdefs.h. */ | #include configure:6077: checking for C++ compiler version configure:6086: mpicxx --version >&5 icpc (ICC) 13.1.1 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:6097: $? = 0 configure:6086: mpicxx -v >&5 mpiicpc for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2013, Intel Corporation. All rights reserved. icpc version 13.1.1 (gcc version 4.4.7 compatibility) configure:6097: $? = 0 configure:6086: mpicxx -V >&5 GNU ld version 2.20.51.0.2-5.36.el6 20100205 Intel(R) C++ Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.1.163 Build 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' configure:6097: $? = 1 configure:6086: mpicxx -qversion >&5 icpc: command line warning #10006: ignoring unknown option '-qversion' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' configure:6097: $? = 1 configure:6101: checking whether we are using the GNU C++ compiler configure:6120: mpicxx -c conftest.cpp >&5 configure:6120: $? = 0 configure:6129: result: yes configure:6138: checking whether mpicxx accepts -g configure:6158: mpicxx -c -g conftest.cpp >&5 configure:6158: $? = 0 configure:6199: result: yes configure:6224: checking dependency style of mpicxx configure:6335: result: gcc3 configure:6355: checking how to run the C++ preprocessor configure:6382: mpicxx -E conftest.cpp configure:6382: $? = 0 configure:6396: mpicxx -E conftest.cpp conftest.cpp(11): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:6396: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | /* end confdefs.h. */ | #include configure:6421: result: mpicxx -E configure:6441: mpicxx -E conftest.cpp configure:6441: $? = 0 configure:6455: mpicxx -E conftest.cpp conftest.cpp(11): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:6455: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | /* end confdefs.h. */ | #include configure:6591: checking for Fortran compiler version configure:6600: mpif90 --version >&5 ifort (IFORT) 13.1.1 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:6611: $? = 0 configure:6600: mpif90 -v >&5 mpif90 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2013, Intel Corporation. All rights reserved. ifort version 13.1.1 configure:6611: $? = 0 configure:6600: mpif90 -V >&5 GNU ld version 2.20.51.0.2-5.36.el6 20100205 Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.1.163 Build 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o: In function `main': /export/users/nbtester/efi2linux_nightly/branch-13_0gt/20130314_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x38): undefined reference to `MAIN__' configure:6611: $? = 1 configure:6600: mpif90 -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o: In function `main': /export/users/nbtester/efi2linux_nightly/branch-13_0gt/20130314_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x38): undefined reference to `MAIN__' configure:6611: $? = 1 configure:6620: checking whether we are using the GNU Fortran compiler configure:6642: result: no configure:6648: checking whether mpif90 accepts -g configure:6667: result: no configure:6797: checking for Fortran 77 compiler version configure:6806: mpif77 --version >&5 ifort (IFORT) 13.1.1 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:6817: $? = 0 configure:6806: mpif77 -v >&5 mpif77 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2013, Intel Corporation. All rights reserved. ifort version 13.1.1 configure:6817: $? = 0 configure:6806: mpif77 -V >&5 GNU ld version 2.20.51.0.2-5.36.el6 20100205 Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.1.163 Build 20130313 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o: In function `main': /export/users/nbtester/efi2linux_nightly/branch-13_0gt/20130314_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x38): undefined reference to `MAIN__' configure:6817: $? = 1 configure:6806: mpif77 -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o: In function `main': /export/users/nbtester/efi2linux_nightly/branch-13_0gt/20130314_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x38): undefined reference to `MAIN__' configure:6817: $? = 1 configure:6826: checking whether we are using the GNU Fortran 77 compiler configure:6848: result: no configure:6854: checking whether mpif77 accepts -g configure:6873: result: no configure:6906: checking how to get verbose linking output from mpif77 configure:6916: mpif77 -c conftest.f >&5 configure:6916: $? = 0 configure:6934: mpif77 -o conftest -v conftest.f mpif77 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2013, Intel Corporation. All rights reserved. ifort version 13.1.1 /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64/fortcom -D__INTEL_COMPILER=1310 -D__unix__ -D__unix -D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64 -D__x86_64__ -D_MT -D__INTEL_COMPILER_BUILD_DATE=20130313 -D__INTEL_OFFLOAD -D__i686 -D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__ -D__tune_pentium4__ -D__SSE2__ -D__SSE__ -D__MMX__ -mGLOB_pack_sort_init_list -I. -I/scinet/gpc/intel/impi/4.1.2.040//intel64/include -I/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/include -I/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/include -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -I/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include/intel64 -I/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include -I/usr/local/include -I/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include -I/usr/include -O2 -simd -offload_host -mP1OPT_version=13.1-intel64 -mGLOB_diag_file=/tmp/ifortTWXOxh.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I/scinet/gpc/intel/impi/4.1.2.040//intel64/include -o conftest -v -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /scinet/gpc/intel/impi/4.1.2.040//intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64 -mGLOB_as_output_backup_file_name=/tmp/ifortDUWgPwas_.s -mIPOPT_activate -mIPOPT_lite -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d91 -mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort1391261971N4QAk2 -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64/libiml_attr.so -mIPOPT_obj_output_file_name=/tmp/ifortTWXOxh.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchTG1OE5 "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 20100205" -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/tmp/iforttempfiledMClkd -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ifortTWXOxh.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN -mP1OPT_source_file_name=conftest.f -mP2OPT_symtab_type_copy=true conftest.f #include "..." search starts here: #include <...> search starts here: . /scinet/gpc/intel/impi/4.1.2.040//intel64/include /home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/include /scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/include /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include/intel64 /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include /usr/local/include /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include /usr/include End of search list. ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -o conftest /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/ifortTWXOxh.o --enable-new-dtags -rpath /scinet/gpc/intel/impi/4.1.2.040//intel64/lib -rpath /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -Bstatic -lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o configure:7000: result: -v configure:7002: checking for Fortran 77 libraries of mpif77 configure:7025: mpif77 -o conftest -v conftest.f mpif77 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2013, Intel Corporation. All rights reserved. ifort version 13.1.1 /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64/fortcom -D__INTEL_COMPILER=1310 -D__unix__ -D__unix -D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64 -D__x86_64__ -D_MT -D__INTEL_COMPILER_BUILD_DATE=20130313 -D__INTEL_OFFLOAD -D__i686 -D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__ -D__tune_pentium4__ -D__SSE2__ -D__SSE__ -D__MMX__ -mGLOB_pack_sort_init_list -I. -I/scinet/gpc/intel/impi/4.1.2.040//intel64/include -I/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/include -I/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/include -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -I/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include/intel64 -I/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include -I/usr/local/include -I/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include -I/usr/include -O2 -simd -offload_host -mP1OPT_version=13.1-intel64 -mGLOB_diag_file=/tmp/ifortXvwCgF.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I/scinet/gpc/intel/impi/4.1.2.040//intel64/include -o conftest -v -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /scinet/gpc/intel/impi/4.1.2.040//intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64 -mGLOB_as_output_backup_file_name=/tmp/ifortrDOUeXas_.s -mIPOPT_activate -mIPOPT_lite -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d91 -mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort618773866NU76ln -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64/libiml_attr.so -mIPOPT_obj_output_file_name=/tmp/ifortXvwCgF.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchtN66Jw "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 20100205" -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/tmp/iforttempfilextNQKF -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ifortXvwCgF.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN -mP1OPT_source_file_name=conftest.f -mP2OPT_symtab_type_copy=true conftest.f #include "..." search starts here: #include <...> search starts here: . /scinet/gpc/intel/impi/4.1.2.040//intel64/include /home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/include /scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/include /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include/intel64 /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include /usr/local/include /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include /usr/include End of search list. ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -o conftest /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/ifortXvwCgF.o --enable-new-dtags -rpath /scinet/gpc/intel/impi/4.1.2.040//intel64/lib -rpath /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -Bstatic -lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o configure:7200: result: -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s configure:7215: checking how to get verbose linking output from mpif90 configure:7225: mpif90 -c conftest.f >&5 configure:7225: $? = 0 configure:7243: mpif90 -o conftest -v conftest.f mpif90 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2013, Intel Corporation. All rights reserved. ifort version 13.1.1 /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64/fortcom -D__INTEL_COMPILER=1310 -D__unix__ -D__unix -D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64 -D__x86_64__ -D_MT -D__INTEL_COMPILER_BUILD_DATE=20130313 -D__INTEL_OFFLOAD -D__i686 -D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__ -D__tune_pentium4__ -D__SSE2__ -D__SSE__ -D__MMX__ -mGLOB_pack_sort_init_list -I. -I/scinet/gpc/intel/impi/4.1.2.040//intel64/include/gfortran -I/scinet/gpc/intel/impi/4.1.2.040//intel64/include -I/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/include -I/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/include -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -I/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include/intel64 -I/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include -I/usr/local/include -I/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include -I/usr/include -O2 -simd -offload_host -mP1OPT_version=13.1-intel64 -mGLOB_diag_file=/tmp/ifort1F5ORe.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I/scinet/gpc/intel/impi/4.1.2.040//intel64/include/gfortran -I/scinet/gpc/intel/impi/4.1.2.040//intel64/include -o conftest -v -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /scinet/gpc/intel/impi/4.1.2.040//intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64 -mGLOB_as_output_backup_file_name=/tmp/ifortU3qN3Cas_.s -mIPOPT_activate -mIPOPT_lite -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d91 -mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort813414428Ns3JJQ -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64/libiml_attr.so -mIPOPT_obj_output_file_name=/tmp/ifort1F5ORe.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchMmhr7d "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 20100205" -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/tmp/iforttempfileOXv6eq -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ifort1F5ORe.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN -mP1OPT_source_file_name=conftest.f -mP2OPT_symtab_type_copy=true conftest.f #include "..." search starts here: #include <...> search starts here: . /scinet/gpc/intel/impi/4.1.2.040//intel64/include/gfortran /scinet/gpc/intel/impi/4.1.2.040//intel64/include /home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/include /scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/include /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include/intel64 /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include /usr/local/include /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include /usr/include End of search list. ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -o conftest /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/ifort1F5ORe.o --enable-new-dtags -rpath /scinet/gpc/intel/impi/4.1.2.040//intel64/lib -rpath /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -Bstatic -lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o configure:7309: result: -v configure:7311: checking for Fortran libraries of mpif90 configure:7334: mpif90 -o conftest -v conftest.f mpif90 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2013, Intel Corporation. All rights reserved. ifort version 13.1.1 /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64/fortcom -D__INTEL_COMPILER=1310 -D__unix__ -D__unix -D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64 -D__x86_64__ -D_MT -D__INTEL_COMPILER_BUILD_DATE=20130313 -D__INTEL_OFFLOAD -D__i686 -D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__ -D__tune_pentium4__ -D__SSE2__ -D__SSE__ -D__MMX__ -mGLOB_pack_sort_init_list -I. -I/scinet/gpc/intel/impi/4.1.2.040//intel64/include/gfortran -I/scinet/gpc/intel/impi/4.1.2.040//intel64/include -I/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/include -I/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/include -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -I/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include/intel64 -I/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include -I/usr/local/include -I/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include -I/usr/include -O2 -simd -offload_host -mP1OPT_version=13.1-intel64 -mGLOB_diag_file=/tmp/ifortSe4fUJ.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I/scinet/gpc/intel/impi/4.1.2.040//intel64/include/gfortran -I/scinet/gpc/intel/impi/4.1.2.040//intel64/include -o conftest -v -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /scinet/gpc/intel/impi/4.1.2.040//intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64 -mGLOB_as_output_backup_file_name=/tmp/ifortXqWFLbas_.s -mIPOPT_activate -mIPOPT_lite -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d91 -mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort324736680sDjd7h -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/bin/intel64/libiml_attr.so -mIPOPT_obj_output_file_name=/tmp/ifortSe4fUJ.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchDPTfKN "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 20100205" -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/tmp/iforttempfileTl1LH1 -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ifortSe4fUJ.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN -mP1OPT_source_file_name=conftest.f -mP2OPT_symtab_type_copy=true conftest.f #include "..." search starts here: #include <...> search starts here: . /scinet/gpc/intel/impi/4.1.2.040//intel64/include/gfortran /scinet/gpc/intel/impi/4.1.2.040//intel64/include /home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/include /scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/include /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include/intel64 /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/include /usr/local/include /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include /usr/include End of search list. ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -o conftest /home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/for_main.o -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/ifortSe4fUJ.o --enable-new-dtags -rpath /scinet/gpc/intel/impi/4.1.2.040//intel64/lib -rpath /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -Bstatic -lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o configure:7509: result: -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s configure:7541: checking whether ln -s works configure:7545: result: yes configure:7552: checking whether make sets $(MAKE) configure:7574: result: yes configure:7660: checking how to print strings configure:7687: result: printf configure:7708: checking for a sed that does not truncate output configure:7772: result: sed configure:7790: checking for grep that handles long lines and -e configure:7848: result: /bin/grep configure:7853: checking for egrep configure:7915: result: /bin/grep -E configure:7920: checking for fgrep configure:7982: result: /bin/grep -F configure:8017: checking for ld used by mpicc configure:8084: result: /usr/bin/ld configure:8091: checking if the linker (/usr/bin/ld) is GNU ld configure:8106: result: yes configure:8118: checking for BSD- or MS-compatible name lister (nm) configure:8167: result: /usr/bin/nm -B configure:8297: checking the name lister (/usr/bin/nm -B) interface configure:8304: mpicc -c -g -O2 conftest.c >&5 configure:8307: /usr/bin/nm -B "conftest.o" configure:8310: output 0000000000000000 N .debug_info_seg 0000000000000000 B some_variable configure:8317: result: BSD nm configure:8321: checking the maximum length of command line arguments configure:8451: result: 1966080 configure:8468: checking whether the shell understands some XSI constructs configure:8478: result: yes configure:8482: checking whether the shell understands "+=" configure:8488: result: yes configure:8523: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format configure:8563: result: func_convert_file_noop configure:8570: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format configure:8590: result: func_convert_file_noop configure:8597: checking for /usr/bin/ld option to reload object files configure:8604: result: -r configure:8678: checking for objdump configure:8694: found /usr/bin/objdump configure:8705: result: objdump configure:8737: checking how to recognize dependent libraries configure:8939: result: pass_all configure:9024: checking for dlltool configure:9054: result: no configure:9084: checking how to associate runtime and link libraries configure:9111: result: printf %s\n configure:9172: checking for ar configure:9188: found /usr/bin/ar configure:9199: result: ar configure:9236: checking for archiver @FILE support configure:9253: mpicc -c -g -O2 conftest.c >&5 configure:9253: $? = 0 configure:9256: ar cru libconftest.a @conftest.lst >&5 configure:9259: $? = 0 configure:9264: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:9267: $? = 1 configure:9279: result: @ configure:9337: checking for strip configure:9353: found /usr/bin/strip configure:9364: result: strip configure:9436: checking for ranlib configure:9452: found /usr/bin/ranlib configure:9463: result: ranlib configure:9565: checking command to parse /usr/bin/nm -B output from mpicc object configure:9685: mpicc -c -g -O2 conftest.c >&5 configure:9688: $? = 0 configure:9692: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:9695: $? = 0 configure:9761: mpicc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:9764: $? = 0 configure:9802: result: ok configure:9839: checking for sysroot configure:9869: result: no configure:9946: mpicc -c -g -O2 conftest.c >&5 configure:9949: $? = 0 configure:10125: checking for mt configure:10155: result: no configure:10175: checking if : is a manifest tool configure:10181: : '-?' configure:10189: result: no configure:10827: checking for ANSI C header files configure:10847: mpicc -c -g -O2 conftest.c >&5 configure:10847: $? = 0 configure:10920: mpicc -o conftest -g -O2 conftest.c -lm >&5 configure:10920: $? = 0 configure:10920: ./conftest configure:10920: $? = 0 configure:10931: result: yes configure:10944: checking for sys/types.h configure:10944: mpicc -c -g -O2 conftest.c >&5 configure:10944: $? = 0 configure:10944: result: yes configure:10944: checking for sys/stat.h configure:10944: mpicc -c -g -O2 conftest.c >&5 configure:10944: $? = 0 configure:10944: result: yes configure:10944: checking for stdlib.h configure:10944: mpicc -c -g -O2 conftest.c >&5 configure:10944: $? = 0 configure:10944: result: yes configure:10944: checking for string.h configure:10944: mpicc -c -g -O2 conftest.c >&5 configure:10944: $? = 0 configure:10944: result: yes configure:10944: checking for memory.h configure:10944: mpicc -c -g -O2 conftest.c >&5 configure:10944: $? = 0 configure:10944: result: yes configure:10944: checking for strings.h configure:10944: mpicc -c -g -O2 conftest.c >&5 configure:10944: $? = 0 configure:10944: result: yes configure:10944: checking for inttypes.h configure:10944: mpicc -c -g -O2 conftest.c >&5 configure:10944: $? = 0 configure:10944: result: yes configure:10944: checking for stdint.h configure:10944: mpicc -c -g -O2 conftest.c >&5 configure:10944: $? = 0 configure:10944: result: yes configure:10944: checking for unistd.h configure:10944: mpicc -c -g -O2 conftest.c >&5 configure:10944: $? = 0 configure:10944: result: yes configure:10958: checking for dlfcn.h configure:10958: mpicc -c -g -O2 conftest.c >&5 configure:10958: $? = 0 configure:10958: result: yes configure:11145: checking for objdir configure:11160: result: .libs configure:11431: checking if mpicc supports -fno-rtti -fno-exceptions configure:11449: mpicc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 configure:11453: $? = 0 configure:11466: result: yes configure:11793: checking for mpicc option to produce PIC configure:11800: result: -fPIC -DPIC configure:11808: checking if mpicc PIC flag -fPIC -DPIC works configure:11826: mpicc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:11830: $? = 0 configure:11843: result: yes configure:11872: checking if mpicc static flag -static works configure:11900: result: no configure:11915: checking if mpicc supports -c -o file.o configure:11936: mpicc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:11940: $? = 0 configure:11962: result: yes configure:11970: checking if mpicc supports -c -o file.o configure:12017: result: yes configure:12050: checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:13207: result: yes configure:13447: checking dynamic linker characteristics configure:13958: mpicc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c -lm >&5 configure:13958: $? = 0 configure:14192: result: GNU/Linux ld.so configure:14299: checking how to hardcode library paths into programs configure:14324: result: immediate configure:14864: checking whether stripping libraries is possible configure:14869: result: yes configure:14904: checking if libtool supports shared libraries configure:14906: result: yes configure:14909: checking whether to build shared libraries configure:14930: result: no configure:14933: checking whether to build static libraries configure:14937: result: yes configure:14960: checking how to run the C++ preprocessor configure:15026: result: mpicxx -E configure:15046: mpicxx -E conftest.cpp configure:15046: $? = 0 configure:15060: mpicxx -E conftest.cpp conftest.cpp(23): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:15060: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:15229: checking for ld used by mpicxx configure:15296: result: /usr/bin/ld -m elf_x86_64 configure:15303: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:15318: result: yes configure:15373: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:16378: result: yes configure:16414: mpicxx -c -g -O2 conftest.cpp >&5 configure:16417: $? = 0 configure:16937: checking for mpicxx option to produce PIC configure:16944: result: -fPIC -DPIC configure:16952: checking if mpicxx PIC flag -fPIC -DPIC works configure:16970: mpicxx -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:16974: $? = 0 configure:16987: result: yes configure:17010: checking if mpicxx static flag -static works configure:17038: result: no configure:17050: checking if mpicxx supports -c -o file.o configure:17071: mpicxx -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:17075: $? = 0 configure:17097: result: yes configure:17102: checking if mpicxx supports -c -o file.o configure:17149: result: yes configure:17179: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:17218: result: yes configure:17359: checking dynamic linker characteristics configure:18038: result: GNU/Linux ld.so configure:18091: checking how to hardcode library paths into programs configure:18116: result: immediate configure:18264: checking if libtool supports shared libraries configure:18266: result: yes configure:18269: checking whether to build shared libraries configure:18289: result: no configure:18292: checking whether to build static libraries configure:18296: result: yes configure:18617: checking for mpif77 option to produce PIC configure:18624: result: -fPIC configure:18632: checking if mpif77 PIC flag -fPIC works configure:18650: mpif77 -c -fPIC conftest.f >&5 configure:18654: $? = 0 configure:18667: result: yes configure:18690: checking if mpif77 static flag -static works configure:18718: result: no configure:18730: checking if mpif77 supports -c -o file.o configure:18751: mpif77 -c -o out/conftest2.o conftest.f >&5 configure:18755: $? = 0 configure:18777: result: yes configure:18782: checking if mpif77 supports -c -o file.o configure:18829: result: yes configure:18859: checking whether the mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:19966: result: yes configure:20107: checking dynamic linker characteristics configure:20780: result: GNU/Linux ld.so configure:20833: checking how to hardcode library paths into programs configure:20858: result: immediate configure:21002: checking if libtool supports shared libraries configure:21004: result: yes configure:21007: checking whether to build shared libraries configure:21027: result: no configure:21030: checking whether to build static libraries configure:21034: result: yes configure:21068: mpif90 -c conftest.f >&5 configure:21071: $? = 0 configure:21500: checking for mpif90 option to produce PIC configure:21507: result: -fPIC configure:21515: checking if mpif90 PIC flag -fPIC works configure:21533: mpif90 -c -fPIC conftest.f >&5 configure:21537: $? = 0 configure:21550: result: yes configure:21573: checking if mpif90 static flag -static works configure:21601: result: no configure:21613: checking if mpif90 supports -c -o file.o configure:21634: mpif90 -c -o out/conftest2.o conftest.f >&5 configure:21638: $? = 0 configure:21660: result: yes configure:21665: checking if mpif90 supports -c -o file.o configure:21712: result: yes configure:21742: checking whether the mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:22849: result: yes configure:22990: checking dynamic linker characteristics configure:23663: result: GNU/Linux ld.so configure:23716: checking how to hardcode library paths into programs configure:23741: result: immediate configure:23805: checking for known C compilers configure:23826: mpicc -c -g -O2 conftest.c >&5 configure:23826: $? = 0 configure:24198: result: Intel configure:24206: checking for known compiler/OS combinations configure:24272: result: Intel:x86_64 configure:24286: checking for known c++ compilers configure:24307: mpicxx -c -g -O2 conftest.cpp >&5 configure:24307: $? = 0 configure:24702: result: Intel configure:24710: checking for known compiler/OS combinations configure:24772: result: Intel:x86_64 configure:24951: checking whether make supports nested variables configure:24968: result: yes configure:24983: checking if platform is IBM BlueGene configure:25000: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c >&5 conftest.c(25): error: identifier "choke" is undefined choke me ^ conftest.c(27): error: expected a ";" int ^ conftest.c(33): warning #12: parsing restarts here after previous syntax error compilation aborted for conftest.c (code 2) configure:25000: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | #ifndef __bg__ | choke me | #endif | int | main () | { | | ; | return 0; | } configure:25005: result: no configure:25013: checking for gunzip configure:25029: found /bin/gunzip configure:25040: result: gunzip -c configure:25050: checking for gzip configure:25077: result: gunzip -c configure:25087: checking for zcat configure:25114: result: gunzip -c configure:25137: checking if C++ compiler supports template class specialization configure:25161: mpicxx -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG conftest.cpp >&5 configure:25161: $? = 0 configure:25174: result: yes configure:25184: checking if C++ compiler supports template function specialization configure:25209: mpicxx -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG conftest.cpp >&5 configure:25209: $? = 0 configure:25222: result: yes configure:25240: checking if mpicxx works configure:25253: mpicxx -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG conftest.cpp >&5 configure:25253: $? = 0 configure:25267: mpicxx -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG conftest.cpp >&5 conftest.cpp(28): error: identifier "choke" is undefined choke me ^ compilation aborted for conftest.cpp (code 2) configure:25267: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | int | main () | { | #ifdef __cplusplus | choke me | #endif | ; | return 0; | } configure:25271: result: yes configure:25294: checking for dummy main to link with Fortran libraries configure:25328: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:25328: $? = 0 configure:25373: result: none configure:25406: checking for Fortran name-mangling scheme configure:25419: mpif90 -c -O2 conftest.f >&5 configure:25419: $? = 0 configure:25460: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c cfortran_test.o -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 /tmp/icclQWesF.o: In function `main': conftest.c:(.text+0x2b): undefined reference to `foobar' configure:25460: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:25460: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c cfortran_test.o -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:25460: $? = 0 configure:25518: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c cfortran_test.o -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:25518: $? = 0 configure:25560: result: lower case, underscore, no extra underscore configure:25641: checking whether Fortran 77 supports Cray-style pointer configure:25668: mpif77 -c -O2 conftest.f >&5 configure:25668: $? = 0 configure:25687: result: yes configure:25690: checking for Fortran 77 compiler flag for Cray-style pointer configure:25696: result: none configure:25710: checking whether Fortran 90 supports Cray-style pointer configure:25737: mpif90 -c -O2 conftest.f >&5 configure:25737: $? = 0 configure:25756: result: yes configure:25759: checking for Fortran 90 compiler flag for Cray-style pointer configure:25765: result: none configure:25780: checking for vsnprintf configure:25780: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:25780: $? = 0 configure:25780: result: yes configure:25792: checking if std::vector has templatized insert method configure:25827: mpicxx -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG conftest.cpp >&5 configure:25827: $? = 0 configure:25840: result: yes configure:25848: checking if std::copy must be old SGI format configure:25879: mpicxx -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG conftest.cpp >&5 conftest.cpp(37): warning #592: variable "a" is used before its value is set int* a, b = std::count(a, a, 5); ^ configure:25879: $? = 0 configure:25892: result: no configure:25925: checking for inttypes.h configure:25925: result: yes configure:25933: checking for stdint.h configure:25933: result: yes configure:25941: checking for sys/types.h configure:25941: result: yes configure:25949: checking stddef.h usability configure:25949: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c >&5 configure:25949: $? = 0 configure:25949: result: yes configure:25949: checking stddef.h presence configure:25949: mpicc -E conftest.c configure:25949: $? = 0 configure:25949: result: yes configure:25949: checking for stddef.h configure:25949: result: yes configure:25957: checking for stdlib.h configure:25957: result: yes configure:25970: checking size of void * configure:25975: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:25975: $? = 0 configure:25975: ./conftest configure:25975: $? = 0 configure:25989: result: 8 configure:26035: checking for size_t configure:26035: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c >&5 configure:26035: $? = 0 configure:26035: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c >&5 conftest.c(75): error: expected an expression if (sizeof ((size_t))) ^ compilation aborted for conftest.c (code 2) configure:26035: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:26035: result: yes configure:26081: checking for ptrdiff_t configure:26081: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c >&5 configure:26081: $? = 0 configure:26081: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c >&5 conftest.c(76): error: expected an expression if (sizeof ((ptrdiff_t))) ^ compilation aborted for conftest.c (code 2) configure:26081: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:26081: result: yes configure:26229: checking size of EntityHandle configure:26231: result: 8 configure:26246: checking if iMesh support is to be built configure:26248: result: yes configure:26264: checking if iGeom support is to be built configure:26266: result: no configure:26330: creating ./config.lt ## ------------------ ## ## Running config.lt. ## ## ------------------ ## config.lt:799: creating libtool configure:28484: checking ieeefp.h usability configure:28484: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG conftest.c >&5 conftest.c(71): catastrophic error: cannot open source file "ieeefp.h" #include ^ compilation aborted for conftest.c (code 4) configure:28484: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:28484: result: no configure:28484: checking ieeefp.h presence configure:28484: mpicc -E conftest.c conftest.c(38): error #2379: cannot open source file "ieeefp.h" #include ^ configure:28484: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | /* end confdefs.h. */ | #include configure:28484: result: no configure:28484: checking for ieeefp.h configure:28484: result: no configure:28505: checking for C++ unordered_map configure:28536: mpicxx -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG conftest.cpp >&5 /usr/include/c++/4.4.7/c++0x_warning.h(31): catastrophic error: #error directive: This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. #error This file requires compiler and library support for the upcoming \ ^ compilation aborted for conftest.cpp (code 4) configure:28536: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | /* end confdefs.h. */ | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | std::unordered_map map | ; | return 0; | } configure:28560: mpicxx -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG conftest.cpp >&5 configure:28560: $? = 0 configure:28597: result: std::tr1 configure:28621: checking mpi.h usability configure:28621: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 configure:28621: $? = 0 configure:28621: result: yes configure:28621: checking mpi.h presence configure:28621: mpicc -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c configure:28621: $? = 0 configure:28621: result: yes configure:28621: checking for mpi.h configure:28621: result: yes configure:28636: checking If mpi.h conflicts with C headers in C++ configure:28664: mpicxx -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.cpp /scinet/gpc/intel/impi/4.1.2.040//intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h" #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h" ^ configure:28664: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | /* end confdefs.h. */ | #include | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | | ; | return 0; | } configure:28689: mpicxx -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.cpp configure:28689: $? = 0 configure:28690: result: MPICH_IGNORE_CXX_SEEK configure:29057: checking for mpiexec configure:29073: found /scinet/gpc/intel/impi/4.1.2.040//bin64//mpiexec configure:29084: result: mpiexec configure:29323: checking for deflate in -lz configure:29356: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib conftest.c -lz -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:29356: $? = 0 configure:29365: result: yes configure:29401: checking for SZ_Decompress in -lsz configure:29434: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib conftest.c -lsz -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:29434: $? = 0 configure:29443: result: yes configure:29479: checking if HDF5 support is enabled configure:29495: result: yes configure:29537: checking hdf5.h usability configure:29537: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -isystem /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 configure:29537: $? = 0 configure:29537: result: yes configure:29537: checking hdf5.h presence configure:29537: mpicc -E -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -isystem /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c configure:29537: $? = 0 configure:29537: result: yes configure:29537: checking for hdf5.h configure:29537: result: yes configure:29557: checking for gpfs_stat in -lgpfs configure:29590: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -isystem /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib conftest.c -lgpfs -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:29590: $? = 0 configure:29599: result: yes configure:29615: checking for H5Fopen in -lhdf5 configure:29648: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -isystem /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib conftest.c -lhdf5 -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/libhdf5.a(H5Zdeflate.o): In function `H5Z_filter_deflate': ../../src/H5Zdeflate.c:(.text+0xd0): undefined reference to `inflateInit_' ../../src/H5Zdeflate.c:(.text+0xe6): undefined reference to `inflate' ../../src/H5Zdeflate.c:(.text+0x1c6): undefined reference to `compress2' ../../src/H5Zdeflate.c:(.text+0x2ee): undefined reference to `inflateEnd' ../../src/H5Zdeflate.c:(.text+0x32e): undefined reference to `inflateEnd' ../../src/H5Zdeflate.c:(.text+0x384): undefined reference to `inflateEnd' configure:29648: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:29658: result: no configure:29672: checking for H5Fopen in -lhdf5 configure:29705: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -isystem /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib conftest.c -lhdf5 -lz -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:29705: $? = 0 configure:29715: result: yes configure:30060: checking for H5Pset_fapl_mpio in -lhdf5 configure:30094: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib conftest.c -lhdf5 -lhdf5 -lgpfs -lz -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:30094: $? = 0 configure:30103: result: yes configure:30126: checking for H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS configure:30152: mpicc -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -isystem /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include conftest.c configure:30152: $? = 0 configure:30153: result: yes configure:30171: checking if CCMIO support is enabled configure:30185: result: yes configure:30193: checking if CCMIO support available configure:30195: result: configure:30227: checking ccmio.h usability configure:30227: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 conftest.c(72): catastrophic error: cannot open source file "ccmio.h" #include ^ compilation aborted for conftest.c (code 4) configure:30227: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:30227: result: no configure:30227: checking ccmio.h presence configure:30227: mpicc -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c conftest.c(39): error #2379: cannot open source file "ccmio.h" #include ^ configure:30227: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:30227: result: no configure:30227: checking for ccmio.h configure:30227: result: no configure:30241: checking ccmioutility.h usability configure:30241: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 conftest.c(72): catastrophic error: cannot open source file "ccmioutility.h" #include ^ compilation aborted for conftest.c (code 4) configure:30241: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:30241: result: no configure:30241: checking ccmioutility.h presence configure:30241: mpicc -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c conftest.c(39): error #2379: cannot open source file "ccmioutility.h" #include ^ configure:30241: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:30241: result: no configure:30241: checking for ccmioutility.h configure:30241: result: no configure:30255: checking ccmiocore.h usability configure:30255: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 conftest.c(72): catastrophic error: cannot open source file "ccmiocore.h" #include ^ compilation aborted for conftest.c (code 4) configure:30255: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:30255: result: no configure:30255: checking ccmiocore.h presence configure:30255: mpicc -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c conftest.c(39): error #2379: cannot open source file "ccmiocore.h" #include ^ configure:30255: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:30255: result: no configure:30255: checking for ccmiocore.h configure:30255: result: no configure:30274: checking unsuccessful, Ccmio support disabled configure:30276: result: configure:30312: checking if DAMSEL support is enabled configure:30329: result: no configure:30334: checking if DAMSEL support available configure:30336: result: configure:30434: checking if NetCDF support is enabled configure:30448: result: yes configure:30492: checking netcdf.h usability configure:30492: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 configure:30492: $? = 0 configure:30492: result: yes configure:30492: checking netcdf.h presence configure:30492: mpicc -E -I/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c configure:30492: $? = 0 configure:30492: result: yes configure:30492: checking for netcdf.h configure:30492: result: yes configure:30503: checking if NC_MAX_DIMS is at least 65536 configure:30524: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 conftest.c(52): error: the size of an array must be greater than zero int arr[1 + (int)(NC_MAX_DIMS) - (int)(65536)]; ^ compilation aborted for conftest.c (code 2) configure:30524: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | int arr[1 + (int)(NC_MAX_DIMS) - (int)(65536)]; | ; | return 0; | } configure:30528: result: no configure:30534: checking if NC_MAX_VARS is at least 524288 configure:30555: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 conftest.c(52): error: the size of an array must be greater than zero int arr[1 + (int)(NC_MAX_VARS) - (int)(524288)]; ^ compilation aborted for conftest.c (code 2) configure:30555: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | int arr[1 + (int)(NC_MAX_VARS) - (int)(524288)]; | ; | return 0; | } configure:30559: result: no configure:30574: checking for nc_create in -lnetcdf configure:30607: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib conftest.c -lnetcdf -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `NC4_create': nc4file.c:(.text+0x184): undefined reference to `H5Eset_auto1' nc4file.c:(.text+0x24f): undefined reference to `H5check_version' nc4file.c:(.text+0x26c): undefined reference to `H5check_version' nc4file.c:(.text+0x2cf): undefined reference to `H5Fclose' nc4file.c:(.text+0x344): undefined reference to `H5open' nc4file.c:(.text+0x34a): undefined reference to `H5P_CLS_FILE_ACCESS_g' nc4file.c:(.text+0x34f): undefined reference to `H5Pcreate' nc4file.c:(.text+0x36f): undefined reference to `H5Pset_fclose_degree' nc4file.c:(.text+0x3a2): undefined reference to `H5Pset_fapl_mpio' nc4file.c:(.text+0x3be): undefined reference to `H5Pset_fapl_mpiposix' nc4file.c:(.text+0x3dc): undefined reference to `H5Pset_libver_bounds' nc4file.c:(.text+0x3f0): undefined reference to `H5open' nc4file.c:(.text+0x3f6): undefined reference to `H5P_CLS_FILE_CREATE_g' nc4file.c:(.text+0x3fb): undefined reference to `H5Pcreate' nc4file.c:(.text+0x418): undefined reference to `H5Pset_link_creation_order' nc4file.c:(.text+0x433): undefined reference to `H5Pset_attr_creation_order' nc4file.c:(.text+0x452): undefined reference to `H5Fcreate' nc4file.c:(.text+0x479): undefined reference to `H5Gopen2' nc4file.c:(.text+0x49b): undefined reference to `H5Pclose' nc4file.c:(.text+0x4a6): undefined reference to `H5Pclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `dimscale_visitor': nc4file.c:(.text+0x54a): undefined reference to `H5Gget_objinfo' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `get_netcdf_type': nc4file.c:(.text+0x5b4): undefined reference to `H5Tget_class' nc4file.c:(.text+0x5d5): undefined reference to `H5open' nc4file.c:(.text+0x5de): undefined reference to `H5T_NATIVE_SCHAR_g' nc4file.c:(.text+0x5e3): undefined reference to `H5Tequal' nc4file.c:(.text+0x602): undefined reference to `H5open' nc4file.c:(.text+0x60b): undefined reference to `H5T_NATIVE_SHORT_g' nc4file.c:(.text+0x610): undefined reference to `H5Tequal' nc4file.c:(.text+0x62f): undefined reference to `H5open' nc4file.c:(.text+0x638): undefined reference to `H5T_NATIVE_INT_g' nc4file.c:(.text+0x63d): undefined reference to `H5Tequal' nc4file.c:(.text+0x65c): undefined reference to `H5open' nc4file.c:(.text+0x665): undefined reference to `H5T_NATIVE_FLOAT_g' nc4file.c:(.text+0x66a): undefined reference to `H5Tequal' nc4file.c:(.text+0x689): undefined reference to `H5open' nc4file.c:(.text+0x692): undefined reference to `H5T_NATIVE_DOUBLE_g' nc4file.c:(.text+0x697): undefined reference to `H5Tequal' nc4file.c:(.text+0x6b6): undefined reference to `H5open' nc4file.c:(.text+0x6bf): undefined reference to `H5T_NATIVE_UCHAR_g' nc4file.c:(.text+0x6c4): undefined reference to `H5Tequal' nc4file.c:(.text+0x6e3): undefined reference to `H5open' nc4file.c:(.text+0x6ec): undefined reference to `H5T_NATIVE_USHORT_g' nc4file.c:(.text+0x6f1): undefined reference to `H5Tequal' nc4file.c:(.text+0x710): undefined reference to `H5open' nc4file.c:(.text+0x719): undefined reference to `H5T_NATIVE_UINT_g' nc4file.c:(.text+0x71e): undefined reference to `H5Tequal' nc4file.c:(.text+0x73d): undefined reference to `H5open' nc4file.c:(.text+0x746): undefined reference to `H5T_NATIVE_LLONG_g' nc4file.c:(.text+0x74b): undefined reference to `H5Tequal' nc4file.c:(.text+0x76a): undefined reference to `H5open' nc4file.c:(.text+0x773): undefined reference to `H5T_NATIVE_ULLONG_g' nc4file.c:(.text+0x778): undefined reference to `H5Tequal' nc4file.c:(.text+0x7cd): undefined reference to `H5Tis_variable_str' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `read_var': nc4file.c:(.text+0x937): undefined reference to `H5Pget_chunk_cache' nc4file.c:(.text+0xa68): undefined reference to `H5Dget_create_plist' nc4file.c:(.text+0xa80): undefined reference to `H5Pget_layout' nc4file.c:(.text+0xab5): undefined reference to `H5Pget_chunk' nc4file.c:(.text+0xb4c): undefined reference to `H5Pget_nfilters' nc4file.c:(.text+0xba3): undefined reference to `H5Pget_filter2' nc4file.c:(.text+0xd75): undefined reference to `H5open' nc4file.c:(.text+0xd7b): undefined reference to `H5T_NATIVE_SCHAR_g' nc4file.c:(.text+0xd86): undefined reference to `H5open' nc4file.c:(.text+0xd8c): undefined reference to `H5T_NATIVE_SHORT_g' nc4file.c:(.text+0xd97): undefined reference to `H5open' nc4file.c:(.text+0xd9d): undefined reference to `H5T_NATIVE_INT_g' nc4file.c:(.text+0xda8): undefined reference to `H5open' nc4file.c:(.text+0xdae): undefined reference to `H5T_NATIVE_FLOAT_g' nc4file.c:(.text+0xdb9): undefined reference to `H5open' nc4file.c:(.text+0xdbf): undefined reference to `H5T_NATIVE_DOUBLE_g' nc4file.c:(.text+0xdca): undefined reference to `H5open' nc4file.c:(.text+0xdd0): undefined reference to `H5T_NATIVE_UCHAR_g' nc4file.c:(.text+0xddb): undefined reference to `H5open' nc4file.c:(.text+0xde1): undefined reference to `H5T_NATIVE_USHORT_g' nc4file.c:(.text+0xdec): undefined reference to `H5open' nc4file.c:(.text+0xdf2): undefined reference to `H5T_NATIVE_UINT_g' nc4file.c:(.text+0xdfd): undefined reference to `H5open' nc4file.c:(.text+0xe03): undefined reference to `H5T_NATIVE_LLONG_g' nc4file.c:(.text+0xe0e): undefined reference to `H5open' nc4file.c:(.text+0xe14): undefined reference to `H5T_NATIVE_ULLONG_g' nc4file.c:(.text+0xe22): undefined reference to `H5Dget_type' nc4file.c:(.text+0xe3a): undefined reference to `H5Tget_native_type' nc4file.c:(.text+0xe50): undefined reference to `H5Tget_class' nc4file.c:(.text+0xeef): undefined reference to `H5Tequal' nc4file.c:(.text+0xf25): undefined reference to `H5Tget_order' nc4file.c:(.text+0x108c): undefined reference to `H5Tclose' nc4file.c:(.text+0x109d): undefined reference to `H5Tclose' nc4file.c:(.text+0x10d2): undefined reference to `H5Pfill_value_defined' nc4file.c:(.text+0x116c): undefined reference to `H5Aopen_name' nc4file.c:(.text+0x1182): undefined reference to `H5Aget_type' nc4file.c:(.text+0x11a1): undefined reference to `H5Aread' nc4file.c:(.text+0x11b1): undefined reference to `H5Aget_space' nc4file.c:(.text+0x11c7): undefined reference to `H5Sget_simple_extent_npoints' nc4file.c:(.text+0x11e2): undefined reference to `H5Sclose' nc4file.c:(.text+0x1202): undefined reference to `H5Tclose' nc4file.c:(.text+0x1220): undefined reference to `H5Aclose' nc4file.c:(.text+0x1259): undefined reference to `H5Pclose' nc4file.c:(.text+0x12ec): undefined reference to `H5DSiterate_scales' nc4file.c:(.text+0x132e): undefined reference to `H5Aget_num_attrs' nc4file.c:(.text+0x1359): undefined reference to `H5Aopen_idx' nc4file.c:(.text+0x1376): undefined reference to `H5Aget_name' nc4file.c:(.text+0x13d4): undefined reference to `H5Aclose' nc4file.c:(.text+0x1422): undefined reference to `H5Tis_variable_str' nc4file.c:(.text+0x1431): undefined reference to `H5Tget_size' nc4file.c:(.text+0x1464): undefined reference to `H5Aclose' nc4file.c:(.text+0x1744): undefined reference to `H5Pget_fill_value' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `read_hdf5_att': nc4file.c:(.text+0x1851): undefined reference to `H5Aget_type' nc4file.c:(.text+0x1867): undefined reference to `H5Tget_native_type' nc4file.c:(.text+0x187b): undefined reference to `H5Tget_class' nc4file.c:(.text+0x18c4): undefined reference to `H5Tget_class' nc4file.c:(.text+0x18e5): undefined reference to `H5open' nc4file.c:(.text+0x18ef): undefined reference to `H5T_NATIVE_SCHAR_g' nc4file.c:(.text+0x18f4): undefined reference to `H5Tequal' nc4file.c:(.text+0x1913): undefined reference to `H5open' nc4file.c:(.text+0x191d): undefined reference to `H5T_NATIVE_SHORT_g' nc4file.c:(.text+0x1922): undefined reference to `H5Tequal' nc4file.c:(.text+0x1941): undefined reference to `H5open' nc4file.c:(.text+0x194b): undefined reference to `H5T_NATIVE_INT_g' nc4file.c:(.text+0x1950): undefined reference to `H5Tequal' nc4file.c:(.text+0x196f): undefined reference to `H5open' nc4file.c:(.text+0x1979): undefined reference to `H5T_NATIVE_FLOAT_g' nc4file.c:(.text+0x197e): undefined reference to `H5Tequal' nc4file.c:(.text+0x199d): undefined reference to `H5open' nc4file.c:(.text+0x19a7): undefined reference to `H5T_NATIVE_DOUBLE_g' nc4file.c:(.text+0x19ac): undefined reference to `H5Tequal' nc4file.c:(.text+0x19cb): undefined reference to `H5open' nc4file.c:(.text+0x19d5): undefined reference to `H5T_NATIVE_UCHAR_g' nc4file.c:(.text+0x19da): undefined reference to `H5Tequal' nc4file.c:(.text+0x19f9): undefined reference to `H5open' nc4file.c:(.text+0x1a03): undefined reference to `H5T_NATIVE_USHORT_g' nc4file.c:(.text+0x1a08): undefined reference to `H5Tequal' nc4file.c:(.text+0x1a27): undefined reference to `H5open' nc4file.c:(.text+0x1a31): undefined reference to `H5T_NATIVE_UINT_g' nc4file.c:(.text+0x1a36): undefined reference to `H5Tequal' nc4file.c:(.text+0x1a52): undefined reference to `H5open' nc4file.c:(.text+0x1a5c): undefined reference to `H5T_NATIVE_LLONG_g' nc4file.c:(.text+0x1a61): undefined reference to `H5Tequal' nc4file.c:(.text+0x1a7d): undefined reference to `H5open' nc4file.c:(.text+0x1a87): undefined reference to `H5T_NATIVE_ULLONG_g' nc4file.c:(.text+0x1a8c): undefined reference to `H5Tequal' nc4file.c:(.text+0x1ad7): undefined reference to `H5Aget_space' nc4file.c:(.text+0x1aeb): undefined reference to `H5Sget_simple_extent_ndims' nc4file.c:(.text+0x1afc): undefined reference to `H5Sget_simple_extent_npoints' nc4file.c:(.text+0x1b55): undefined reference to `H5Tget_size' nc4file.c:(.text+0x1b7d): undefined reference to `H5Sget_simple_extent_dims' nc4file.c:(.text+0x1bf2): undefined reference to `H5Aread' nc4file.c:(.text+0x1c0c): undefined reference to `H5Tclose' nc4file.c:(.text+0x1c18): undefined reference to `H5Sclose' nc4file.c:(.text+0x1c45): undefined reference to `H5Tclose' nc4file.c:(.text+0x1c56): undefined reference to `H5Sclose' nc4file.c:(.text+0x1cbc): undefined reference to `H5Aread' nc4file.c:(.text+0x1d69): undefined reference to `H5Aread' nc4file.c:(.text+0x1db3): undefined reference to `H5Aread' nc4file.c:(.text+0x1dd8): undefined reference to `H5Tis_variable_str' nc4file.c:(.text+0x1e1c): undefined reference to `H5Tis_variable_str' nc4file.c:(.text+0x1e33): undefined reference to `H5Tget_size' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `nc4_rec_read_types_cb': nc4file.c:(.text+0x1eb2): undefined reference to `H5Oopen' nc4file.c:(.text+0x1ec6): undefined reference to `H5Iget_type' nc4file.c:(.text+0x1eda): undefined reference to `H5Oclose' nc4file.c:(.text+0x1fc1): undefined reference to `H5Gopen2' nc4file.c:(.text+0x1fd5): undefined reference to `H5Gget_create_plist' nc4file.c:(.text+0x1fe3): undefined reference to `H5Pget_link_creation_order' nc4file.c:(.text+0x1fea): undefined reference to `H5Pclose' nc4file.c:(.text+0x2019): undefined reference to `H5Literate' nc4file.c:(.text+0x2037): undefined reference to `H5Literate' nc4file.c:(.text+0x20c6): undefined reference to `H5Topen2' nc4file.c:(.text+0x20dc): undefined reference to `H5Tget_native_type' nc4file.c:(.text+0x20f0): undefined reference to `H5Tget_size' nc4file.c:(.text+0x2104): undefined reference to `H5Tget_class' nc4file.c:(.text+0x212a): undefined reference to `H5Tis_variable_str' nc4file.c:(.text+0x2145): undefined reference to `H5Tget_super' nc4file.c:(.text+0x2159): undefined reference to `H5Tget_size' nc4file.c:(.text+0x2198): undefined reference to `H5Tget_super' nc4file.c:(.text+0x21ac): undefined reference to `H5Tget_size' nc4file.c:(.text+0x21f2): undefined reference to `H5Tget_size' nc4file.c:(.text+0x2362): undefined reference to `H5Tget_nmembers' nc4file.c:(.text+0x23ba): undefined reference to `H5Tget_member_name' nc4file.c:(.text+0x240b): undefined reference to `H5Tget_member_value' nc4file.c:(.text+0x247b): undefined reference to `H5Tget_nmembers' nc4file.c:(.text+0x24ca): undefined reference to `H5Tget_member_type' nc4file.c:(.text+0x24e0): undefined reference to `H5Tget_native_type' nc4file.c:(.text+0x24ff): undefined reference to `H5Tget_member_name' nc4file.c:(.text+0x2565): undefined reference to `H5Tget_member_offset' nc4file.c:(.text+0x2575): undefined reference to `H5Tget_class' nc4file.c:(.text+0x266e): undefined reference to `H5Gopen2' nc4file.c:(.text+0x26b2): undefined reference to `H5Tget_array_ndims' nc4file.c:(.text+0x26ca): undefined reference to `H5Tget_array_dims1' nc4file.c:(.text+0x2846): undefined reference to `H5Tget_super' nc4file.c:(.text+0x2888): undefined reference to `H5Tget_super' nc4file.c:(.text+0x2893): undefined reference to `H5Tget_super' nc4file.c:(.text+0x2940): undefined reference to `H5Oclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `nc4_rec_read_vars_cb': nc4file.c:(.text+0x29ac): undefined reference to `H5Oopen' nc4file.c:(.text+0x29c4): undefined reference to `H5Iget_type' nc4file.c:(.text+0x29dc): undefined reference to `H5Oclose' nc4file.c:(.text+0x2a5b): undefined reference to `H5Dopen2' nc4file.c:(.text+0x2a73): undefined reference to `H5Dget_access_plist' nc4file.c:(.text+0x2a8b): undefined reference to `H5Dget_space' nc4file.c:(.text+0x2aa3): undefined reference to `H5Sget_simple_extent_ndims' nc4file.c:(.text+0x2ae1): undefined reference to `H5Sget_simple_extent_dims' nc4file.c:(.text+0x2af5): undefined reference to `H5DSis_scale' nc4file.c:(.text+0x2bad): undefined reference to `H5Eauto_is_v2' nc4file.c:(.text+0x2bce): undefined reference to `H5Eget_auto2' nc4file.c:(.text+0x2bd9): undefined reference to `H5Eset_auto2' nc4file.c:(.text+0x2bf0): undefined reference to `H5Eget_auto1' nc4file.c:(.text+0x2bf9): undefined reference to `H5Eset_auto1' nc4file.c:(.text+0x2c10): undefined reference to `H5Aopen_by_name' nc4file.c:(.text+0x2c26): undefined reference to `H5open' nc4file.c:(.text+0x2c3c): undefined reference to `H5T_NATIVE_INT_g' nc4file.c:(.text+0x2c41): undefined reference to `H5Aread' nc4file.c:(.text+0x2c55): undefined reference to `H5Aclose' nc4file.c:(.text+0x2c7e): undefined reference to `H5Eset_auto2' nc4file.c:(.text+0x2c95): undefined reference to `H5Eset_auto1' nc4file.c:(.text+0x2d8a): undefined reference to `H5DSget_scale_name' nc4file.c:(.text+0x2e1a): undefined reference to `H5DSget_num_scales' nc4file.c:(.text+0x2e6f): undefined reference to `H5Pclose' nc4file.c:(.text+0x2e92): undefined reference to `H5Sclose' nc4file.c:(.text+0x2ecb): undefined reference to `H5Sclose' nc4file.c:(.text+0x2efb): undefined reference to `H5Dclose' nc4file.c:(.text+0x2f0c): undefined reference to `H5Pclose' nc4file.c:(.text+0x2fd5): undefined reference to `H5Gget_create_plist' nc4file.c:(.text+0x2fe8): undefined reference to `H5Pget_link_creation_order' nc4file.c:(.text+0x2ff0): undefined reference to `H5Pclose' nc4file.c:(.text+0x3040): undefined reference to `H5Literate' nc4file.c:(.text+0x3062): undefined reference to `H5Literate' nc4file.c:(.text+0x3071): undefined reference to `H5Aget_num_attrs' nc4file.c:(.text+0x3095): undefined reference to `H5Aopen_idx' nc4file.c:(.text+0x30b3): undefined reference to `H5Aget_name' nc4file.c:(.text+0x3119): undefined reference to `H5Aclose' nc4file.c:(.text+0x312b): undefined reference to `H5Aclose' nc4file.c:(.text+0x324e): undefined reference to `H5Aget_type' nc4file.c:(.text+0x326c): undefined reference to `H5Tget_native_type' nc4file.c:(.text+0x327f): undefined reference to `H5Tget_class' nc4file.c:(.text+0x32cf): undefined reference to `H5Tget_class' nc4file.c:(.text+0x32f0): undefined reference to `H5open' nc4file.c:(.text+0x32fd): undefined reference to `H5T_NATIVE_SCHAR_g' nc4file.c:(.text+0x3302): undefined reference to `H5Tequal' nc4file.c:(.text+0x3321): undefined reference to `H5open' nc4file.c:(.text+0x332e): undefined reference to `H5T_NATIVE_SHORT_g' nc4file.c:(.text+0x3333): undefined reference to `H5Tequal' nc4file.c:(.text+0x3352): undefined reference to `H5open' nc4file.c:(.text+0x335f): undefined reference to `H5T_NATIVE_INT_g' nc4file.c:(.text+0x3364): undefined reference to `H5Tequal' nc4file.c:(.text+0x3383): undefined reference to `H5open' nc4file.c:(.text+0x3390): undefined reference to `H5T_NATIVE_FLOAT_g' nc4file.c:(.text+0x3395): undefined reference to `H5Tequal' nc4file.c:(.text+0x33b4): undefined reference to `H5open' nc4file.c:(.text+0x33c1): undefined reference to `H5T_NATIVE_DOUBLE_g' nc4file.c:(.text+0x33c6): undefined reference to `H5Tequal' nc4file.c:(.text+0x33e5): undefined reference to `H5open' nc4file.c:(.text+0x33f2): undefined reference to `H5T_NATIVE_UCHAR_g' nc4file.c:(.text+0x33f7): undefined reference to `H5Tequal' nc4file.c:(.text+0x3416): undefined reference to `H5open' nc4file.c:(.text+0x3423): undefined reference to `H5T_NATIVE_USHORT_g' nc4file.c:(.text+0x3428): undefined reference to `H5Tequal' nc4file.c:(.text+0x3447): undefined reference to `H5open' nc4file.c:(.text+0x3454): undefined reference to `H5T_NATIVE_UINT_g' nc4file.c:(.text+0x3459): undefined reference to `H5Tequal' nc4file.c:(.text+0x3475): undefined reference to `H5open' nc4file.c:(.text+0x3482): undefined reference to `H5T_NATIVE_LLONG_g' nc4file.c:(.text+0x3487): undefined reference to `H5Tequal' nc4file.c:(.text+0x34a3): undefined reference to `H5open' nc4file.c:(.text+0x34b0): undefined reference to `H5T_NATIVE_ULLONG_g' nc4file.c:(.text+0x34b5): undefined reference to `H5Tequal' nc4file.c:(.text+0x3500): undefined reference to `H5Aget_space' nc4file.c:(.text+0x3518): undefined reference to `H5Sget_simple_extent_ndims' nc4file.c:(.text+0x352c): undefined reference to `H5Sget_simple_extent_npoints' nc4file.c:(.text+0x357d): undefined reference to `H5Tget_size' nc4file.c:(.text+0x35ab): undefined reference to `H5Sget_simple_extent_dims' nc4file.c:(.text+0x362a): undefined reference to `H5Aread' nc4file.c:(.text+0x3650): undefined reference to `H5Tclose' nc4file.c:(.text+0x3660): undefined reference to `H5Sclose' nc4file.c:(.text+0x36ec): undefined reference to `H5Tclose' nc4file.c:(.text+0x36fd): undefined reference to `H5Sclose' nc4file.c:(.text+0x376d): undefined reference to `H5Aread' nc4file.c:(.text+0x3845): undefined reference to `H5Aread' nc4file.c:(.text+0x389f): undefined reference to `H5Aread' nc4file.c:(.text+0x38c9): undefined reference to `H5Tis_variable_str' nc4file.c:(.text+0x390b): undefined reference to `H5Tis_variable_str' nc4file.c:(.text+0x3924): undefined reference to `H5Tget_size' nc4file.c:(.text+0x39a9): undefined reference to `H5Oclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `NC4_open': nc4file.c:(.text+0x3a24): undefined reference to `H5Eset_auto1' nc4file.c:(.text+0x3bee): undefined reference to `H5check_version' nc4file.c:(.text+0x3c09): undefined reference to `H5check_version' nc4file.c:(.text+0x3c62): undefined reference to `H5Fclose' nc4file.c:(.text+0x3d2d): undefined reference to `H5open' nc4file.c:(.text+0x3d33): undefined reference to `H5P_CLS_FILE_ACCESS_g' nc4file.c:(.text+0x3d38): undefined reference to `H5Pcreate' nc4file.c:(.text+0x3d66): undefined reference to `H5Pset_fclose_degree' nc4file.c:(.text+0x3da1): undefined reference to `H5Pset_fapl_mpio' nc4file.c:(.text+0x3dc7): undefined reference to `H5Pset_fapl_mpiposix' nc4file.c:(.text+0x3dea): undefined reference to `H5Fopen' nc4file.c:(.text+0x3e79): undefined reference to `H5Gopen2' nc4file.c:(.text+0x3e91): undefined reference to `H5Gget_create_plist' nc4file.c:(.text+0x3ea4): undefined reference to `H5Pget_link_creation_order' nc4file.c:(.text+0x3eac): undefined reference to `H5Pclose' nc4file.c:(.text+0x3eed): undefined reference to `H5Literate' nc4file.c:(.text+0x3f0f): undefined reference to `H5Literate' nc4file.c:(.text+0x3f7c): undefined reference to `H5Gget_create_plist' nc4file.c:(.text+0x3f8f): undefined reference to `H5Pget_link_creation_order' nc4file.c:(.text+0x3f97): undefined reference to `H5Pclose' nc4file.c:(.text+0x3feb): undefined reference to `H5Pclose' nc4file.c:(.text+0x400f): undefined reference to `H5Pclose' nc4file.c:(.text+0x4039): undefined reference to `H5Literate' nc4file.c:(.text+0x405b): undefined reference to `H5Literate' nc4file.c:(.text+0x406e): undefined reference to `H5Aget_num_attrs' nc4file.c:(.text+0x4092): undefined reference to `H5Aopen_idx' nc4file.c:(.text+0x40b0): undefined reference to `H5Aget_name' nc4file.c:(.text+0x4116): undefined reference to `H5Aclose' nc4file.c:(.text+0x412a): undefined reference to `H5Gopen2' nc4file.c:(.text+0x414d): undefined reference to `H5Aclose' nc4file.c:(.text+0x426b): undefined reference to `H5Aget_type' nc4file.c:(.text+0x4289): undefined reference to `H5Tget_native_type' nc4file.c:(.text+0x429c): undefined reference to `H5Tget_class' nc4file.c:(.text+0x42ec): undefined reference to `H5Tget_class' nc4file.c:(.text+0x430d): undefined reference to `H5open' nc4file.c:(.text+0x431a): undefined reference to `H5T_NATIVE_SCHAR_g' nc4file.c:(.text+0x431f): undefined reference to `H5Tequal' nc4file.c:(.text+0x433e): undefined reference to `H5open' nc4file.c:(.text+0x434b): undefined reference to `H5T_NATIVE_SHORT_g' nc4file.c:(.text+0x4350): undefined reference to `H5Tequal' nc4file.c:(.text+0x436f): undefined reference to `H5open' nc4file.c:(.text+0x437c): undefined reference to `H5T_NATIVE_INT_g' nc4file.c:(.text+0x4381): undefined reference to `H5Tequal' nc4file.c:(.text+0x43a0): undefined reference to `H5open' nc4file.c:(.text+0x43ad): undefined reference to `H5T_NATIVE_FLOAT_g' nc4file.c:(.text+0x43b2): undefined reference to `H5Tequal' nc4file.c:(.text+0x43d1): undefined reference to `H5open' nc4file.c:(.text+0x43de): undefined reference to `H5T_NATIVE_DOUBLE_g' nc4file.c:(.text+0x43e3): undefined reference to `H5Tequal' nc4file.c:(.text+0x4402): undefined reference to `H5open' nc4file.c:(.text+0x440f): undefined reference to `H5T_NATIVE_UCHAR_g' nc4file.c:(.text+0x4414): undefined reference to `H5Tequal' nc4file.c:(.text+0x4433): undefined reference to `H5open' nc4file.c:(.text+0x4440): undefined reference to `H5T_NATIVE_USHORT_g' nc4file.c:(.text+0x4445): undefined reference to `H5Tequal' nc4file.c:(.text+0x4464): undefined reference to `H5open' nc4file.c:(.text+0x4471): undefined reference to `H5T_NATIVE_UINT_g' nc4file.c:(.text+0x4476): undefined reference to `H5Tequal' nc4file.c:(.text+0x4492): undefined reference to `H5open' nc4file.c:(.text+0x449f): undefined reference to `H5T_NATIVE_LLONG_g' nc4file.c:(.text+0x44a4): undefined reference to `H5Tequal' nc4file.c:(.text+0x44c0): undefined reference to `H5open' nc4file.c:(.text+0x44cd): undefined reference to `H5T_NATIVE_ULLONG_g' nc4file.c:(.text+0x44d2): undefined reference to `H5Tequal' nc4file.c:(.text+0x451d): undefined reference to `H5Aget_space' nc4file.c:(.text+0x4535): undefined reference to `H5Sget_simple_extent_ndims' nc4file.c:(.text+0x4549): undefined reference to `H5Sget_simple_extent_npoints' nc4file.c:(.text+0x459a): undefined reference to `H5Tget_size' nc4file.c:(.text+0x45c8): undefined reference to `H5Sget_simple_extent_dims' nc4file.c:(.text+0x4647): undefined reference to `H5Aread' nc4file.c:(.text+0x466d): undefined reference to `H5Tclose' nc4file.c:(.text+0x467d): undefined reference to `H5Sclose' nc4file.c:(.text+0x4709): undefined reference to `H5Tclose' nc4file.c:(.text+0x471a): undefined reference to `H5Sclose' nc4file.c:(.text+0x478a): undefined reference to `H5Aread' nc4file.c:(.text+0x485c): undefined reference to `H5Aread' nc4file.c:(.text+0x48b3): undefined reference to `H5Aread' nc4file.c:(.text+0x48dd): undefined reference to `H5Tis_variable_str' nc4file.c:(.text+0x491f): undefined reference to `H5Tis_variable_str' nc4file.c:(.text+0x4938): undefined reference to `H5Tget_size' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `NC4__enddef': nc4file.c:(.text+0x4c22): undefined reference to `H5Fflush' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `nc4_enddef_netcdf4_file': nc4file.c:(.text+0x4ce6): undefined reference to `H5Fflush' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `NC4_sync': nc4file.c:(.text+0x4dd8): undefined reference to `H5Fflush' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `NC4_close': nc4file.c:(.text+0x4f08): undefined reference to `H5Fflush' nc4file.c:(.text+0x4f31): undefined reference to `H5Fclose' nc4file.c:(.text+0x4fa6): undefined reference to `H5Fget_obj_count' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `NC4_abort': nc4file.c:(.text+0x51bf): undefined reference to `H5Fclose' nc4file.c:(.text+0x5231): undefined reference to `H5Fget_obj_count' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `nc4_open_var_grp2': nc4hdf.c:(.text+0x3c): undefined reference to `H5Dopen2' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `var_exists_cb': nc4hdf.c:(.text+0x510): undefined reference to `H5Oopen' nc4hdf.c:(.text+0x520): undefined reference to `H5Iget_type' nc4hdf.c:(.text+0x530): undefined reference to `H5Oclose' nc4hdf.c:(.text+0x591): undefined reference to `H5Oclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `nc4_rec_write_metadata': nc4hdf.c:(.text+0x653): undefined reference to `H5Eauto_is_v2' nc4hdf.c:(.text+0x66b): undefined reference to `H5Eget_auto2' nc4hdf.c:(.text+0x676): undefined reference to `H5Eset_auto2' nc4hdf.c:(.text+0x687): undefined reference to `H5Eget_auto1' nc4hdf.c:(.text+0x690): undefined reference to `H5Eset_auto1' nc4hdf.c:(.text+0x69b): undefined reference to `H5Adelete' nc4hdf.c:(.text+0x6b3): undefined reference to `H5Eset_auto2' nc4hdf.c:(.text+0x6c4): undefined reference to `H5Eset_auto1' nc4hdf.c:(.text+0x73c): undefined reference to `H5Screate' nc4hdf.c:(.text+0x757): undefined reference to `H5Screate_simple' nc4hdf.c:(.text+0x774): undefined reference to `H5Acreate1' nc4hdf.c:(.text+0x78d): undefined reference to `H5Awrite' nc4hdf.c:(.text+0x7b9): undefined reference to `H5Tclose' nc4hdf.c:(.text+0x7ca): undefined reference to `H5Aclose' nc4hdf.c:(.text+0x7db): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x95f): undefined reference to `H5Screate' nc4hdf.c:(.text+0x97c): undefined reference to `H5Screate' nc4hdf.c:(.text+0x995): undefined reference to `H5Tset_size' nc4hdf.c:(.text+0x9a8): undefined reference to `H5Tset_strpad' nc4hdf.c:(.text+0xb46): undefined reference to `H5DSattach_scale' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `write_dim': nc4hdf.c:(.text+0xcb0): undefined reference to `H5open' nc4hdf.c:(.text+0xcb6): undefined reference to `H5P_CLS_DATASET_CREATE_g' nc4hdf.c:(.text+0xcbb): undefined reference to `H5Pcreate' nc4hdf.c:(.text+0xd04): undefined reference to `H5Pset_chunk' nc4hdf.c:(.text+0xd26): undefined reference to `H5Screate_simple' nc4hdf.c:(.text+0xd4d): undefined reference to `H5Pset_attr_creation_order' nc4hdf.c:(.text+0xd5a): undefined reference to `H5open' nc4hdf.c:(.text+0xd65): undefined reference to `H5T_IEEE_F32BE_g' nc4hdf.c:(.text+0xd72): undefined reference to `H5Dcreate1' nc4hdf.c:(.text+0xd85): undefined reference to `H5Sclose' nc4hdf.c:(.text+0xd94): undefined reference to `H5Pclose' nc4hdf.c:(.text+0xdc2): undefined reference to `H5DSset_scale' nc4hdf.c:(.text+0xe4c): undefined reference to `H5Gmove2' nc4hdf.c:(.text+0xe83): undefined reference to `H5Screate' nc4hdf.c:(.text+0xe9c): undefined reference to `H5Eauto_is_v2' nc4hdf.c:(.text+0xebd): undefined reference to `H5Eget_auto2' nc4hdf.c:(.text+0xec8): undefined reference to `H5Eset_auto2' nc4hdf.c:(.text+0xedf): undefined reference to `H5Eget_auto1' nc4hdf.c:(.text+0xee8): undefined reference to `H5Eset_auto1' nc4hdf.c:(.text+0xeff): undefined reference to `H5Aopen_by_name' nc4hdf.c:(.text+0xf22): undefined reference to `H5Eset_auto2' nc4hdf.c:(.text+0xf39): undefined reference to `H5Eset_auto1' nc4hdf.c:(.text+0xf46): undefined reference to `H5open' nc4hdf.c:(.text+0xf56): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0xf5b): undefined reference to `H5Awrite' nc4hdf.c:(.text+0xf6a): undefined reference to `H5Sclose' nc4hdf.c:(.text+0xf79): undefined reference to `H5Aclose' nc4hdf.c:(.text+0x1042): undefined reference to `H5Dextend' nc4hdf.c:(.text+0x108c): undefined reference to `H5open' nc4hdf.c:(.text+0x109f): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0x10a4): undefined reference to `H5Acreate1' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `write_var': nc4hdf.c:(.text+0x1140): undefined reference to `H5Screate' nc4hdf.c:(.text+0x1158): undefined reference to `H5Eauto_is_v2' nc4hdf.c:(.text+0x1170): undefined reference to `H5Eget_auto2' nc4hdf.c:(.text+0x117b): undefined reference to `H5Eset_auto2' nc4hdf.c:(.text+0x118c): undefined reference to `H5Eget_auto1' nc4hdf.c:(.text+0x1195): undefined reference to `H5Eset_auto1' nc4hdf.c:(.text+0x11ac): undefined reference to `H5Aopen_by_name' nc4hdf.c:(.text+0x11c7): undefined reference to `H5Eset_auto2' nc4hdf.c:(.text+0x11d8): undefined reference to `H5Eset_auto1' nc4hdf.c:(.text+0x11e6): undefined reference to `H5open' nc4hdf.c:(.text+0x11f7): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0x11fc): undefined reference to `H5Awrite' nc4hdf.c:(.text+0x120c): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x121c): undefined reference to `H5Aclose' nc4hdf.c:(.text+0x12ce): undefined reference to `H5Gget_num_objs' nc4hdf.c:(.text+0x1302): undefined reference to `H5Literate' nc4hdf.c:(.text+0x13e8): undefined reference to `H5open' nc4hdf.c:(.text+0x13ee): undefined reference to `H5P_CLS_DATASET_CREATE_g' nc4hdf.c:(.text+0x13f3): undefined reference to `H5Pcreate' nc4hdf.c:(.text+0x1407): undefined reference to `H5open' nc4hdf.c:(.text+0x140d): undefined reference to `H5P_CLS_DATASET_ACCESS_g' nc4hdf.c:(.text+0x1412): undefined reference to `H5Pcreate' nc4hdf.c:(.text+0x14c8): undefined reference to `H5Pset_fill_value' nc4hdf.c:(.text+0x1509): undefined reference to `H5Tclose' nc4hdf.c:(.text+0x1521): undefined reference to `H5Pset_fill_time' nc4hdf.c:(.text+0x153b): undefined reference to `H5Pset_shuffle' nc4hdf.c:(.text+0x155b): undefined reference to `H5Pset_deflate' nc4hdf.c:(.text+0x1575): undefined reference to `H5Pset_fletcher32' nc4hdf.c:(.text+0x1802): undefined reference to `H5Screate' nc4hdf.c:(.text+0x181f): undefined reference to `H5Pset_attr_creation_order' nc4hdf.c:(.text+0x184a): undefined reference to `H5Pset_chunk_cache' nc4hdf.c:(.text+0x1885): undefined reference to `H5Dcreate2' nc4hdf.c:(.text+0x18ae): undefined reference to `H5DSset_scale' nc4hdf.c:(.text+0x1940): undefined reference to `H5Tclose' nc4hdf.c:(.text+0x1951): undefined reference to `H5Pclose' nc4hdf.c:(.text+0x1962): undefined reference to `H5Pclose' nc4hdf.c:(.text+0x1973): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x1b53): undefined reference to `H5Eauto_is_v2' nc4hdf.c:(.text+0x1b6e): undefined reference to `H5Eget_auto2' nc4hdf.c:(.text+0x1b79): undefined reference to `H5Eset_auto2' nc4hdf.c:(.text+0x1b8a): undefined reference to `H5Eget_auto1' nc4hdf.c:(.text+0x1b93): undefined reference to `H5Eset_auto1' nc4hdf.c:(.text+0x1ba0): undefined reference to `H5Adelete' nc4hdf.c:(.text+0x1bbb): undefined reference to `H5Eset_auto2' nc4hdf.c:(.text+0x1bcc): undefined reference to `H5Eset_auto1' nc4hdf.c:(.text+0x1c5d): undefined reference to `H5Screate' nc4hdf.c:(.text+0x1c85): undefined reference to `H5Screate_simple' nc4hdf.c:(.text+0x1cb1): undefined reference to `H5Acreate1' nc4hdf.c:(.text+0x1cd4): undefined reference to `H5Awrite' nc4hdf.c:(.text+0x1d0e): undefined reference to `H5Tclose' nc4hdf.c:(.text+0x1d1d): undefined reference to `H5Aclose' nc4hdf.c:(.text+0x1d2e): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x1da9): undefined reference to `H5open' nc4hdf.c:(.text+0x1dbd): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0x1dc2): undefined reference to `H5Acreate1' nc4hdf.c:(.text+0x1ecc): undefined reference to `H5DSdetach_scale' nc4hdf.c:(.text+0x1f6b): undefined reference to `H5DSdetach_scale' nc4hdf.c:(.text+0x1fb6): undefined reference to `H5Dclose' nc4hdf.c:(.text+0x1fd1): undefined reference to `H5Gunlink' nc4hdf.c:(.text+0x2004): undefined reference to `H5Dclose' nc4hdf.c:(.text+0x2066): undefined reference to `H5Pset_fill_value' nc4hdf.c:(.text+0x20c5): undefined reference to `H5Pset_layout' nc4hdf.c:(.text+0x20e0): undefined reference to `H5Pset_chunk' nc4hdf.c:(.text+0x20f6): undefined reference to `H5Screate_simple' nc4hdf.c:(.text+0x2313): undefined reference to `H5Screate_simple' nc4hdf.c:(.text+0x2325): undefined reference to `H5open' nc4hdf.c:(.text+0x2336): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0x233e): undefined reference to `H5Acreate1' nc4hdf.c:(.text+0x2358): undefined reference to `H5open' nc4hdf.c:(.text+0x2362): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0x236b): undefined reference to `H5Awrite' nc4hdf.c:(.text+0x2380): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x239a): undefined reference to `H5Aclose' nc4hdf.c:(.text+0x23d6): undefined reference to `H5Screate' nc4hdf.c:(.text+0x23ee): undefined reference to `H5Eauto_is_v2' nc4hdf.c:(.text+0x2405): undefined reference to `H5Eget_auto2' nc4hdf.c:(.text+0x2410): undefined reference to `H5Eset_auto2' nc4hdf.c:(.text+0x2420): undefined reference to `H5Eget_auto1' nc4hdf.c:(.text+0x2429): undefined reference to `H5Eset_auto1' nc4hdf.c:(.text+0x2441): undefined reference to `H5Aopen_by_name' nc4hdf.c:(.text+0x245c): undefined reference to `H5Eset_auto2' nc4hdf.c:(.text+0x246c): undefined reference to `H5Eset_auto1' nc4hdf.c:(.text+0x2478): undefined reference to `H5open' nc4hdf.c:(.text+0x2487): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0x248c): undefined reference to `H5Awrite' nc4hdf.c:(.text+0x249c): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x24ad): undefined reference to `H5Aclose' nc4hdf.c:(.text+0x24c8): undefined reference to `H5open' nc4hdf.c:(.text+0x24dd): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0x24e2): undefined reference to `H5Acreate1' nc4hdf.c:(.text+0x250c): undefined reference to `H5DSattach_scale' nc4hdf.c:(.text+0x256e): undefined reference to `H5Screate' nc4hdf.c:(.text+0x2597): undefined reference to `H5Screate' nc4hdf.c:(.text+0x25be): undefined reference to `H5Tset_size' nc4hdf.c:(.text+0x25de): undefined reference to `H5Tset_strpad' nc4hdf.c:(.text+0x2643): undefined reference to `H5Dopen2' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `nc4_get_hdf_typeid': nc4hdf.c:(.text+0x26d0): undefined reference to `H5open' nc4hdf.c:(.text+0x26d6): undefined reference to `H5T_C_S1_g' nc4hdf.c:(.text+0x26db): undefined reference to `H5Tcopy' nc4hdf.c:(.text+0x26f6): undefined reference to `H5Tset_size' nc4hdf.c:(.text+0x2711): undefined reference to `H5open' nc4hdf.c:(.text+0x2718): undefined reference to `H5T_STD_U64LE_g' nc4hdf.c:(.text+0x272b): undefined reference to `H5open' nc4hdf.c:(.text+0x2732): undefined reference to `H5T_STD_U64BE_g' nc4hdf.c:(.text+0x2740): undefined reference to `H5open' nc4hdf.c:(.text+0x2747): undefined reference to `H5T_NATIVE_ULLONG_g' nc4hdf.c:(.text+0x275a): undefined reference to `H5open' nc4hdf.c:(.text+0x2761): undefined reference to `H5T_STD_I64LE_g' nc4hdf.c:(.text+0x2774): undefined reference to `H5open' nc4hdf.c:(.text+0x277b): undefined reference to `H5T_STD_I64BE_g' nc4hdf.c:(.text+0x2789): undefined reference to `H5open' nc4hdf.c:(.text+0x2790): undefined reference to `H5T_NATIVE_LLONG_g' nc4hdf.c:(.text+0x27a3): undefined reference to `H5open' nc4hdf.c:(.text+0x27aa): undefined reference to `H5T_STD_U32LE_g' nc4hdf.c:(.text+0x27bd): undefined reference to `H5open' nc4hdf.c:(.text+0x27c4): undefined reference to `H5T_STD_U32BE_g' nc4hdf.c:(.text+0x27d2): undefined reference to `H5open' nc4hdf.c:(.text+0x27d9): undefined reference to `H5T_NATIVE_UINT_g' nc4hdf.c:(.text+0x27ec): undefined reference to `H5open' nc4hdf.c:(.text+0x27f3): undefined reference to `H5T_STD_U16LE_g' nc4hdf.c:(.text+0x2806): undefined reference to `H5open' nc4hdf.c:(.text+0x280d): undefined reference to `H5T_STD_U16BE_g' nc4hdf.c:(.text+0x281b): undefined reference to `H5open' nc4hdf.c:(.text+0x2822): undefined reference to `H5T_NATIVE_USHORT_g' nc4hdf.c:(.text+0x2835): undefined reference to `H5open' nc4hdf.c:(.text+0x283c): undefined reference to `H5T_STD_U8LE_g' nc4hdf.c:(.text+0x284f): undefined reference to `H5open' nc4hdf.c:(.text+0x2856): undefined reference to `H5T_STD_U8BE_g' nc4hdf.c:(.text+0x2864): undefined reference to `H5open' nc4hdf.c:(.text+0x286b): undefined reference to `H5T_NATIVE_UCHAR_g' nc4hdf.c:(.text+0x287e): undefined reference to `H5open' nc4hdf.c:(.text+0x2885): undefined reference to `H5T_IEEE_F64LE_g' nc4hdf.c:(.text+0x2898): undefined reference to `H5open' nc4hdf.c:(.text+0x289f): undefined reference to `H5T_IEEE_F64BE_g' nc4hdf.c:(.text+0x28ad): undefined reference to `H5open' nc4hdf.c:(.text+0x28b4): undefined reference to `H5T_NATIVE_DOUBLE_g' nc4hdf.c:(.text+0x28c7): undefined reference to `H5open' nc4hdf.c:(.text+0x28ce): undefined reference to `H5T_IEEE_F32LE_g' nc4hdf.c:(.text+0x28e1): undefined reference to `H5open' nc4hdf.c:(.text+0x28e8): undefined reference to `H5T_IEEE_F32BE_g' nc4hdf.c:(.text+0x28f6): undefined reference to `H5open' nc4hdf.c:(.text+0x28fd): undefined reference to `H5T_NATIVE_FLOAT_g' nc4hdf.c:(.text+0x2910): undefined reference to `H5open' nc4hdf.c:(.text+0x2917): undefined reference to `H5T_STD_I32LE_g' nc4hdf.c:(.text+0x292a): undefined reference to `H5open' nc4hdf.c:(.text+0x2931): undefined reference to `H5T_STD_I32BE_g' nc4hdf.c:(.text+0x293f): undefined reference to `H5open' nc4hdf.c:(.text+0x2946): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0x2959): undefined reference to `H5open' nc4hdf.c:(.text+0x2960): undefined reference to `H5T_STD_I16LE_g' nc4hdf.c:(.text+0x2973): undefined reference to `H5open' nc4hdf.c:(.text+0x297a): undefined reference to `H5T_STD_I16BE_g' nc4hdf.c:(.text+0x2988): undefined reference to `H5open' nc4hdf.c:(.text+0x298f): undefined reference to `H5T_NATIVE_SHORT_g' nc4hdf.c:(.text+0x299d): undefined reference to `H5open' nc4hdf.c:(.text+0x29a3): undefined reference to `H5T_C_S1_g' nc4hdf.c:(.text+0x29a8): undefined reference to `H5Tcopy' nc4hdf.c:(.text+0x29be): undefined reference to `H5Tset_strpad' nc4hdf.c:(.text+0x29d6): undefined reference to `H5open' nc4hdf.c:(.text+0x29dd): undefined reference to `H5T_STD_I8LE_g' nc4hdf.c:(.text+0x29ed): undefined reference to `H5open' nc4hdf.c:(.text+0x29f4): undefined reference to `H5T_STD_I8BE_g' nc4hdf.c:(.text+0x29ff): undefined reference to `H5open' nc4hdf.c:(.text+0x2a06): undefined reference to `H5T_NATIVE_SCHAR_g' nc4hdf.c:(.text+0x2a6f): undefined reference to `H5Tclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `rec_detach_scales': nc4hdf.c:(.text+0x2b87): undefined reference to `H5DSdetach_scale' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `rec_reattach_scales': nc4hdf.c:(.text+0x2ce9): undefined reference to `H5DSattach_scale' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `nc4_rec_write_types': nc4hdf.c:(.text+0x2d79): undefined reference to `H5open' nc4hdf.c:(.text+0x2d7f): undefined reference to `H5P_CLS_GROUP_CREATE_g' nc4hdf.c:(.text+0x2d84): undefined reference to `H5Pcreate' nc4hdf.c:(.text+0x2d9a): undefined reference to `H5Pset_link_creation_order' nc4hdf.c:(.text+0x2dae): undefined reference to `H5Pset_attr_creation_order' nc4hdf.c:(.text+0x2dcd): undefined reference to `H5Gcreate2' nc4hdf.c:(.text+0x2ddc): undefined reference to `H5Pclose' nc4hdf.c:(.text+0x2e51): undefined reference to `H5Pclose' nc4hdf.c:(.text+0x2e62): undefined reference to `H5Gclose' nc4hdf.c:(.text+0x2ea6): undefined reference to `H5Aget_num_attrs' nc4hdf.c:(.text+0x2edb): undefined reference to `H5Aopen_idx' nc4hdf.c:(.text+0x2ef8): undefined reference to `H5Aget_name' nc4hdf.c:(.text+0x2f58): undefined reference to `H5Screate' nc4hdf.c:(.text+0x2f63): undefined reference to `H5open' nc4hdf.c:(.text+0x2f75): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0x2f7a): undefined reference to `H5Acreate1' nc4hdf.c:(.text+0x2f8e): undefined reference to `H5open' nc4hdf.c:(.text+0x2f9f): undefined reference to `H5T_NATIVE_INT_g' nc4hdf.c:(.text+0x2fa4): undefined reference to `H5Awrite' nc4hdf.c:(.text+0x2fc1): undefined reference to `H5Aclose' nc4hdf.c:(.text+0x2fd7): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x300d): undefined reference to `H5Aclose' nc4hdf.c:(.text+0x305a): undefined reference to `H5Gopen2' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `commit_type': nc4hdf.c:(.text+0x30f3): undefined reference to `H5Tcreate' nc4hdf.c:(.text+0x314d): undefined reference to `H5Tenum_create' nc4hdf.c:(.text+0x3184): undefined reference to `H5Tenum_insert' nc4hdf.c:(.text+0x31e6): undefined reference to `H5Tvlen_create' nc4hdf.c:(.text+0x3202): undefined reference to `H5Tcommit1' nc4hdf.c:(.text+0x3219): undefined reference to `H5Tget_native_type' nc4hdf.c:(.text+0x3253): undefined reference to `H5Tcreate' nc4hdf.c:(.text+0x32df): undefined reference to `H5Tarray_create1' nc4hdf.c:(.text+0x3305): undefined reference to `H5Tinsert' nc4hdf.c:(.text+0x3318): undefined reference to `H5Tclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `nc4_put_vara': nc4hdf.c:(.text+0x457a): undefined reference to `H5Dopen2' nc4hdf.c:(.text+0x45b2): undefined reference to `H5Dopen2' nc4hdf.c:(.text+0x45d5): undefined reference to `H5Dget_space' nc4hdf.c:(.text+0x4604): undefined reference to `H5Sget_simple_extent_dims' nc4hdf.c:(.text+0x4694): undefined reference to `H5Sget_simple_extent_type' nc4hdf.c:(.text+0x469f): undefined reference to `H5Screate' nc4hdf.c:(.text+0x46d0): undefined reference to `H5Sselect_hyperslab' nc4hdf.c:(.text+0x4706): undefined reference to `H5Screate_simple' nc4hdf.c:(.text+0x49c2): undefined reference to `H5open' nc4hdf.c:(.text+0x49c8): undefined reference to `H5P_CLS_DATASET_XFER_g' nc4hdf.c:(.text+0x49cd): undefined reference to `H5Pcreate' nc4hdf.c:(.text+0x4a07): undefined reference to `H5Pset_dxpl_mpio' nc4hdf.c:(.text+0x4ae4): undefined reference to `H5Dextend' nc4hdf.c:(.text+0x4b02): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x4b1a): undefined reference to `H5Dget_space' nc4hdf.c:(.text+0x4b4d): undefined reference to `H5Sselect_hyperslab' nc4hdf.c:(.text+0x4be6): undefined reference to `H5Dwrite' nc4hdf.c:(.text+0x4c9b): undefined reference to `H5Pclose' nc4hdf.c:(.text+0x4d00): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x4d0f): undefined reference to `H5Sclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `nc4_get_vara': nc4hdf.c:(.text+0x695b): undefined reference to `H5Dopen2' nc4hdf.c:(.text+0x6992): undefined reference to `H5Dopen2' nc4hdf.c:(.text+0x69b5): undefined reference to `H5Dget_space' nc4hdf.c:(.text+0x69e4): undefined reference to `H5Sget_simple_extent_dims' nc4hdf.c:(.text+0x6c03): undefined reference to `H5Sget_simple_extent_type' nc4hdf.c:(.text+0x6c0e): undefined reference to `H5Screate' nc4hdf.c:(.text+0x6c4b): undefined reference to `H5Sselect_hyperslab' nc4hdf.c:(.text+0x6c81): undefined reference to `H5Screate_simple' nc4hdf.c:(.text+0x6f17): undefined reference to `H5open' nc4hdf.c:(.text+0x6f1d): undefined reference to `H5P_CLS_DATASET_XFER_g' nc4hdf.c:(.text+0x6f22): undefined reference to `H5Pcreate' nc4hdf.c:(.text+0x6f69): undefined reference to `H5Pset_dxpl_mpio' nc4hdf.c:(.text+0x6fb4): undefined reference to `H5Dread' nc4hdf.c:(.text+0x74de): undefined reference to `H5Pclose' nc4hdf.c:(.text+0x754c): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x7561): undefined reference to `H5Sclose' nc4hdf.c:(.text+0x763d): undefined reference to `H5Tget_size' nc4hdf.c:(.text+0x7664): undefined reference to `H5Tis_variable_str' nc4hdf.c:(.text+0x7689): undefined reference to `H5Tget_size' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `nc4_rec_match_dimscales': nc4hdf.c:(.text+0x792b): undefined reference to `H5Gget_objinfo' nc4hdf.c:(.text+0x7a16): undefined reference to `H5Dget_space' nc4hdf.c:(.text+0x7a67): undefined reference to `H5Sget_simple_extent_dims' nc4hdf.c:(.text+0x7a82): undefined reference to `H5Sget_simple_extent_type' nc4hdf.c:(.text+0x7a92): undefined reference to `H5Sclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o): In function `nc4_rec_find_hdf_type': nc4internal.c:(.text+0x6fc): undefined reference to `H5Tequal' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o): In function `nc4_find_dim_len': nc4internal.c:(.text+0xb8a): undefined reference to `H5Dget_space' nc4internal.c:(.text+0xba5): undefined reference to `H5Sget_simple_extent_type' nc4internal.c:(.text+0xbc8): undefined reference to `H5Sget_simple_extent_ndims' nc4internal.c:(.text+0xc1c): undefined reference to `H5Sget_simple_extent_dims' nc4internal.c:(.text+0xc8a): undefined reference to `H5Sclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o): In function `type_list_del': nc4internal.c:(.text+0x18a5): undefined reference to `H5Tclose' nc4internal.c:(.text+0x18b9): undefined reference to `H5Tclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o): In function `nc4_rec_grp_del': nc4internal.c:(.text+0x1ac1): undefined reference to `H5Tclose' nc4internal.c:(.text+0x1b82): undefined reference to `H5Dclose' nc4internal.c:(.text+0x1bc7): undefined reference to `H5Dclose' nc4internal.c:(.text+0x1c4d): undefined reference to `H5Tclose' nc4internal.c:(.text+0x1c62): undefined reference to `H5Tclose' nc4internal.c:(.text+0x1d5d): undefined reference to `H5Gclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o): In function `var_list_del': nc4internal.c:(.text+0x1ec3): undefined reference to `H5Tclose' nc4internal.c:(.text+0x2014): undefined reference to `H5Tclose' nc4internal.c:(.text+0x202e): undefined reference to `H5Tclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o): In function `nc4_att_list_del': nc4internal.c:(.text+0x2145): undefined reference to `H5Tclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4type.o): In function `NC4_inq_type_equal': nc4type.c:(.text+0x101): undefined reference to `H5Tequal' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4var.o): In function `nc4_reopen_dataset': nc4var.c:(.text+0x17): undefined reference to `H5open' nc4var.c:(.text+0x1d): undefined reference to `H5P_CLS_DATASET_ACCESS_g' nc4var.c:(.text+0x22): undefined reference to `H5Pcreate' nc4var.c:(.text+0x49): undefined reference to `H5Pset_chunk_cache' nc4var.c:(.text+0x57): undefined reference to `H5Dclose' nc4var.c:(.text+0x69): undefined reference to `H5Dopen2' nc4var.c:(.text+0x79): undefined reference to `H5Pclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4var.o): In function `NC4_set_var_chunk_cache': nc4var.c:(.text+0x191): undefined reference to `H5open' nc4var.c:(.text+0x197): undefined reference to `H5P_CLS_DATASET_ACCESS_g' nc4var.c:(.text+0x19c): undefined reference to `H5Pcreate' nc4var.c:(.text+0x1c3): undefined reference to `H5Pset_chunk_cache' nc4var.c:(.text+0x1cf): undefined reference to `H5Dclose' nc4var.c:(.text+0x1e1): undefined reference to `H5Dopen2' nc4var.c:(.text+0x1ef): undefined reference to `H5Pclose' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4var.o): In function `NC4_def_var': nc4var.c:(.text+0x7a3): undefined reference to `H5Tget_native_type' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4var.o): In function `NC4_rename_var': nc4var.c:(.text+0x24d3): undefined reference to `H5Gmove' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4attr.o): In function `NC4_rename_att': nc4attr.c:(.text+0x15e7): undefined reference to `H5Adelete' nc4attr.c:(.text+0x16ac): undefined reference to `H5Adelete' /scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/libnetcdf.a(libnetcdf4_la-nc4attr.o): In function `NC4_del_att': nc4attr.c:(.text+0x1880): undefined reference to `H5Adelete' configure:30607: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_create (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return nc_create (); | ; | return 0; | } configure:30616: result: no configure:31087: checking for nc_create in -lnetcdf configure:31120: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lgpfs -lz -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:31120: $? = 0 configure:31129: result: yes configure:31256: checking if Pnetcdf support is enabled configure:31259: result: yes configure:31303: checking pnetcdf.h usability configure:31303: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 configure:31303: $? = 0 configure:31303: result: yes configure:31303: checking pnetcdf.h presence configure:31303: mpicc -E -I/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c configure:31303: $? = 0 configure:31303: result: yes configure:31303: checking for pnetcdf.h configure:31303: result: yes configure:31314: checking if NC_MAX_DIMS is at least 65536 configure:31335: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 conftest.c(53): error: the size of an array must be greater than zero int arr[1 + (int)(NC_MAX_DIMS) - (int)(65536)]; ^ compilation aborted for conftest.c (code 2) configure:31335: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | #define HAVE_NETCDF_H 1 | #define HAVE_PNETCDF_H 1 | /* end confdefs.h. */ | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | int arr[1 + (int)(NC_MAX_DIMS) - (int)(65536)]; | ; | return 0; | } configure:31339: result: no configure:31345: checking if NC_MAX_VARS is at least 524288 configure:31366: mpicc -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set conftest.c >&5 conftest.c(41): catastrophic error: cannot open source file "netcdf.h" #include ^ compilation aborted for conftest.c (code 4) configure:31366: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.2" | #define PACKAGE_STRING "MOAB 4.6.2" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.2" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 2 | #define MB_VERSION_STRING "MOAB 4.6.2" | #define HAVE_HDF5_H 1 | #define HAVE_NETCDF_H 1 | #define HAVE_PNETCDF_H 1 | /* end confdefs.h. */ | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | int arr[1 + (int)(NC_MAX_VARS) - (int)(524288)]; | ; | return 0; | } configure:31370: result: no configure:31383: checking for ncmpi_create in -lpnetcdf configure:31416: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -I/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib conftest.c -lpnetcdf -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:31416: $? = 0 configure:31425: result: yes configure:31764: checking if mbconvert is to be built configure:31766: result: yes configure:31791: checking if pointsearch is to be built configure:31793: result: no configure:31818: checking if hexmodops is to be built configure:31820: result: yes configure:31845: checking if qvdual is to be built configure:31847: result: no configure:31872: checking if vtkMOABReader is to be built configure:31874: result: no configure:31899: checking if vtkMOABReaderNew is to be built configure:31901: result: no configure:31926: checking if mbsize is to be built configure:31928: result: yes configure:31953: checking if mbskin is to be built configure:31955: result: yes configure:31980: checking if mbtagprop is to be built configure:31982: result: yes configure:32007: checking if mbmem is to be built configure:32009: result: yes configure:32034: checking if mcnpmit is to be built configure:32036: result: no configure:32061: checking if mbcoupler is to be built configure:32063: result: no configure:32088: checking if spheredecomp is to be built configure:32090: result: yes configure:32115: checking if mbsurfplot is to be built configure:32117: result: yes configure:32142: checking if mbzoltan is to be built configure:32144: result: yes configure:32169: checking if dagmc is to be built configure:32171: result: yes configure:32196: checking if gsets is to be built configure:32198: result: yes configure:32223: checking if mbdepth is to be built configure:32225: result: yes configure:32250: checking if refiner is to be built configure:32252: result: no configure:32277: checking if h5mtools is to be built configure:32279: result: yes configure:32304: checking if mbcslam is to be built configure:32306: result: no configure:32368: checking for zoltan_cpp.h configure:32368: mpicxx -c -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -I/home/a/ashgriz/mbehzad/nek5_svn/Zoltan_v3.8/BUILD_DIR//include -DMPICH_IGNORE_CXX_SEEK conftest.cpp >&5 configure:32368: $? = 0 configure:32368: result: yes configure:32410: checking for Zoltan_LB_Partition in -lzoltan configure:32443: mpicc -o conftest -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/home/a/ashgriz/mbehzad/nek5_svn/Zoltan_v3.8/BUILD_DIR//lib conftest.c -lzoltan -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:32443: $? = 0 configure:32452: result: yes configure:36230: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by MOAB config.status 4.6.2, which was generated by GNU Autoconf 2.68. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on gpc-f101n084 config.status:1524: creating Makefile config.status:1524: creating moab.make config.status:1524: creating MOABConfig.cmake config.status:1524: creating src/Makefile config.status:1524: creating src/io/Makefile config.status:1524: creating src/io/mhdf/Makefile config.status:1524: creating src/parallel/Makefile config.status:1524: creating src/oldinc/Makefile config.status:1524: creating test/Makefile config.status:1524: creating test/h5file/Makefile config.status:1524: creating test/dual/Makefile config.status:1524: creating test/obb/Makefile config.status:1524: creating test/perf/Makefile config.status:1524: creating test/io/Makefile config.status:1524: creating test/parallel/Makefile config.status:1524: creating test/oldinc/Makefile config.status:1524: creating itaps/iBase_f.h config.status:1524: creating itaps/Makefile config.status:1524: creating itaps/imesh/Makefile config.status:1524: creating itaps/imesh/iMesh-Defs.inc config.status:1524: creating itaps/igeom/Makefile config.status:1524: creating itaps/igeom/FBiGeom-Defs.inc config.status:1524: creating tools/Makefile config.status:1524: creating tools/refiner/Makefile config.status:1524: creating tools/mbcoupler/Makefile config.status:1524: creating tools/mbcslam/Makefile config.status:1524: creating tools/mbzoltan/Config.moab config.status:1524: creating tools/mbzoltan/Makefile config.status:1524: creating tools/mcnpmit/Makefile config.status:1524: creating tools/qvdual/Makefile config.status:1524: creating tools/dagmc/Makefile config.status:1524: creating tools/vtkMOABReader/CMakeLists.txt config.status:1524: creating tools/vtkMOABReaderNew/CMakeLists.txt config.status:1524: creating doc/Makefile config.status:1524: creating doc/user.dox config.status:1524: creating doc/dev.dox config.status:1524: creating doc/config.tex config.status:1524: creating MeshFiles/Makefile config.status:1524: creating MeshFiles/unittest/Makefile config.status:1524: creating MeshFiles/unittest/io/Makefile config.status:1524: creating config.h config.status:1524: creating src/moab/Version.h config.status:1524: creating src/moab/EntityHandle.hpp config.status:1705: src/moab/EntityHandle.hpp is unchanged config.status:1524: creating src/parallel/moab_mpi_config.h config.status:1705: src/parallel/moab_mpi_config.h is unchanged config.status:1524: creating src/FCDefs.h config.status:1753: executing depfiles commands config.status:1753: executing libtool commands config.status:1753: executing src/MOAB_FCDefs.h commands configure:39258: result: C: mpicc -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set configure:39260: result: C++: mpicxx -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set configure:39263: result: Fortran: mpif90 -O2 configure:39267: result: Fortran: mpif77 -O2 ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=mpicc ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set=set ac_cv_env_CXX_value=mpicxx ac_cv_env_F77_set=set ac_cv_env_F77_value=mpif77 ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set=set ac_cv_env_FC_value=mpif90 ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPIEXEC_NP_set= ac_cv_env_MPIEXEC_NP_value= ac_cv_env_MPIEXEC_set= ac_cv_env_MPIEXEC_value= ac_cv_env_NP_set= ac_cv_env_NP_value= ac_cv_env_QTDIR_set= ac_cv_env_QTDIR_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=no ac_cv_f77_libs=' -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s' ac_cv_fc_compiler_gnu=no ac_cv_fc_dummy_main=none ac_cv_fc_libs=' -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s' ac_cv_fc_mangling='lower case, underscore, no extra underscore' ac_cv_fortran_dummy_main=none ac_cv_func_vsnprintf=yes ac_cv_header_ccmio_h=no ac_cv_header_ccmiocore_h=no ac_cv_header_ccmioutility_h=no ac_cv_header_dlfcn_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_ieeefp_h=no ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_mpi_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_pnetcdf_h=yes ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zoltan_cpp_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_gpfs_gpfs_stat=yes ac_cv_lib_hdf5_H5Pset_fapl_mpio=yes ac_cv_lib_hdf5___H5Fopen=yes ac_cv_lib_netcdf_nc_create=yes ac_cv_lib_pnetcdf_ncmpi_create=yes ac_cv_lib_sz_SZ_Decompress=yes ac_cv_lib_z_deflate=yes ac_cv_lib_zoltan_Zoltan_LB_Partition=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='mpicc -E' ac_cv_prog_CXXCPP='mpicxx -E' ac_cv_prog_MPIEXEC=mpiexec ac_cv_prog_SED=sed ac_cv_prog_ZCAT='gunzip -c' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=mpicc ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=no ac_cv_prog_f77_v=-v ac_cv_prog_fc_g=no ac_cv_prog_fc_v=-v ac_cv_prog_make_make_set=yes ac_cv_sizeof_void_p=8 ac_cv_target=x86_64-unknown-linux-gnu ac_cv_type_ptrdiff_t=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes fathom_cv_std_count_old_sgi=no fathom_cv_std_vector_templatized_insert=yes lt_cv_ar_at_file=@ lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_F77=-fPIC lt_cv_prog_compiler_pic_FC=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_compiler_static_works_F77=no lt_cv_prog_compiler_static_works_FC=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1966080 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop mk_cv_cxx_unordered_map=std::tr1 pac_cv_prog_f77_has_pointer=yes pac_cv_prog_fc_has_pointer=yes snl_cv_template_func_specialization=yes snl_cv_template_specialization=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2/config/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CFLAGS='' AM_CPPFLAGS='-I/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/include -I/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/include -I/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -isystem /scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DPNETCDF_FILE' AM_CXXFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_FCFLAGS='' AM_FFLAGS='' AM_LDFLAGS=' -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib' AM_V='$(V)' AR='ar' AUTOCONF='${SHELL} /home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2/config/missing --run autoconf' AUTOHEADER='${SHELL} /home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2/config/missing --run autoheader' AUTOMAKE='${SHELL} /home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2/config/missing --run automake-1.11' AWK='gawk' CC='mpicc' CCDEPMODE='depmode=gcc3' CCMIO_FILE_FALSE='' CCMIO_FILE_TRUE='#' CCMIO_LIBS='' CFLAGS=' -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -O2 -DNDEBUG' CGM_CPPFLAGS='' CGM_LDFLAGS='' CGM_LIBS='' CGM_LTFLAGS='' CPP='mpicc -E' CPPFLAGS=' -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set' CXX='mpicxx' CXXCPP='mpicxx -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS=' -Wall -wd981 -wd279 -wd1418 -wd383 -wd1572 -wd2259 -O2 -DNDEBUG' CYGPATH_W='echo' DAMSEL_FILE_FALSE='' DAMSEL_FILE_TRUE='#' DAMSEL_LIBS='' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DISTCHECK_CONFIGURE_FLAGS=' --with-mpi="/scinet/gpc/intel/impi/4.1.2.040/" --with-zlib="/scinet/gpc/Libraries/HDF5-1.8.11/zlib" --with-szip="/scinet/gpc/Libraries/HDF5-1.8.11/szip" --with-hdf5-ldflags="-lgpfs" --with-hdf5="/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel" --with-netcdf="/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel" --with-pnetcdf="/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel" --with-zoltan="/home/a/ashgriz/mbehzad/nek5_svn/Zoltan_v3.8/BUILD_DIR/" --enable-mbzoltan="yes"' DLLTOOL='false' DOXYGEN='' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_DOXYGEN_FALSE='' ENABLE_DOXYGEN_TRUE='#' ENABLE_FORTRAN_FALSE='#' ENABLE_FORTRAN_TRUE='' ENABLE_dagmc_FALSE='#' ENABLE_dagmc_TRUE='' ENABLE_gsets_FALSE='#' ENABLE_gsets_TRUE='' ENABLE_h5mtools_FALSE='#' ENABLE_h5mtools_TRUE='' ENABLE_hexmodops_FALSE='#' ENABLE_hexmodops_TRUE='' ENABLE_igeom_FALSE='' ENABLE_igeom_TRUE='#' ENABLE_imesh_FALSE='#' ENABLE_imesh_TRUE='' ENABLE_mbconvert_FALSE='#' ENABLE_mbconvert_TRUE='' ENABLE_mbcoupler_FALSE='' ENABLE_mbcoupler_TRUE='#' ENABLE_mbcslam_FALSE='' ENABLE_mbcslam_TRUE='#' ENABLE_mbdepth_FALSE='#' ENABLE_mbdepth_TRUE='' ENABLE_mbmem_FALSE='#' ENABLE_mbmem_TRUE='' ENABLE_mbsize_FALSE='#' ENABLE_mbsize_TRUE='' ENABLE_mbskin_FALSE='#' ENABLE_mbskin_TRUE='' ENABLE_mbsurfplot_FALSE='#' ENABLE_mbsurfplot_TRUE='' ENABLE_mbtagprop_FALSE='#' ENABLE_mbtagprop_TRUE='' ENABLE_mbzoltan_FALSE='#' ENABLE_mbzoltan_TRUE='' ENABLE_mcnpmit_FALSE='' ENABLE_mcnpmit_TRUE='#' ENABLE_pointsearch_FALSE='' ENABLE_pointsearch_TRUE='#' ENABLE_qvdual_FALSE='' ENABLE_qvdual_TRUE='#' ENABLE_refiner_FALSE='' ENABLE_refiner_TRUE='#' ENABLE_spheredecomp_FALSE='#' ENABLE_spheredecomp_TRUE='' ENABLE_vtkMOABReaderNew_FALSE='' ENABLE_vtkMOABReaderNew_TRUE='#' ENABLE_vtkMOABReader_FALSE='' ENABLE_vtkMOABReader_TRUE='#' EXEEXT='' EXPORT_LDFLAGS='-L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib' EXPORT_LTFLAGS='' F77='mpif77' FC='mpif90' FCFLAGS=' -O2 ' FCLIBS=' -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s' FFLAGS=' -O2 ' FGREP='/bin/grep -F' FLIBS=' -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s' GREP='/bin/grep' HAVE_CGM_FALSE='' HAVE_CGM_TRUE='#' HAVE_ZCAT_FALSE='' HAVE_ZCAT_TRUE='#' HDF5_FILE_FALSE='#' HDF5_FILE_TRUE='' HDF5_LIBS='-lhdf5 -lgpfs -lz' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS=' -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -lgpfs -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib' LIBOBJS='' LIBS=' -lm -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2/config/missing --run makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' MOAB_CGM_DEFINES='' MOAB_CXX_LIBS=' -L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64 -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64 -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib -L/home/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64 -L/scinet/gpc/intel/../lib64 -L/scinet/gpc/intel/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/scinet/gpc/Libraries/parallel-netcdf-1.3.1/intelmpi-intel/lib/ -L/scinet/gpc/lib64 -L/scinet/gpc/intel/ -L/home/scinet/gpc/intel/ics/composer_xe_2013.2.146/tbb/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/compiler/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/debugger/lib/intel64/ -L/scinet/gpc/intel/ics/composer_xe_2013.3.163/mkl/lib/intel64/ -L/scinet/gpc/Libraries/HDF5-1.8.11/szip/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/zlib/lib/ -L/scinet/gpc/Libraries/HDF5-1.8.11/v18-intelmpi-intel/lib/ -L/scinet/gpc/Libraries/netcdf-4.2.1.1/intelmpi_intel/lib/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigc4 -lmpigf -lmpi_dbg -lmpigi -ldl -lrt -lpthread -limf -lsvml -lirng -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc -lintlc -lsvml -lgcc -lirc_s -ldl' MOAB_CXX_LINKFLAGS='-L/scinet/gpc/intel/impi/4.1.2.040//intel64/lib' MOC='' MPE_LIBS='' MPIEXEC='mpiexec' MPIEXEC_NP='-np' NETCDF_FILE_FALSE='#' NETCDF_FILE_TRUE='' NETCDF_LIBS='-lnetcdf -lhdf5_hl' NM='/usr/bin/nm -B' NMEDIT='' NP='2' OBJDUMP='objdump' OBJEXT='o' OLD_HEADERS_FALSE='#' OLD_HEADERS_TRUE='' OTOOL64='' OTOOL='' PACKAGE='moab' PACKAGE_BUGREPORT='' PACKAGE_NAME='MOAB' PACKAGE_STRING='MOAB 4.6.2' PACKAGE_TARNAME='moab' PACKAGE_URL='' PACKAGE_VERSION='4.6.2' PARALLEL_FALSE='#' PARALLEL_HDF5_FALSE='#' PARALLEL_HDF5_TRUE='' PARALLEL_TRUE='' PATH_SEPARATOR=':' PNETCDF_FILE_FALSE='#' PNETCDF_FILE_TRUE='' PNETCDF_LIBS='-lpnetcdf' QTDIR='' QVDUAL_INCLUDES='' QVDUAL_LIBS='' RANLIB='ranlib' SED='sed' SET_MAKE='' SHELL='/bin/sh' SIZEOF_VOID_P='8' STRIP='strip' UIC='' USE_MPIEXEC_FALSE='#' USE_MPIEXEC_TRUE='' USE_MPI_FALSE='#' USE_MPI_TRUE='' VERSION='4.6.2' VTK_INCLUDES='' VTK_INC_DIR='' VTK_LIBS='' VTK_LIB_DIR='' WITH_MPE='no' XMKMF='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' ZCAT='gunzip -c' ZOLTAN_INC_FLAGS='-I/home/a/ashgriz/mbehzad/nek5_svn/Zoltan_v3.8/BUILD_DIR//include' ZOLTAN_LIBS='-lzoltan' ZOLTAN_LIB_FLAGS=' -L/home/a/ashgriz/mbehzad/nek5_svn/Zoltan_v3.8/BUILD_DIR//lib' ac_ct_AR='ar' ac_ct_CC='mpicc' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/home/a/ashgriz/mbehzad/nek5_svn/moab-4.6.2' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-unknown-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='unknown' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "MOAB" #define PACKAGE_TARNAME "moab" #define PACKAGE_VERSION "4.6.2" #define PACKAGE_STRING "MOAB 4.6.2" #define PACKAGE_BUGREPORT "" #define PACKAGE_URL "" #define PACKAGE "moab" #define VERSION "4.6.2" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define FC_FUNC(name,NAME) name ## _ #define FC_FUNC_(name,NAME) name ## _ #define MOAB_HAVE_INTTYPES_H /**/ #define MOAB_HAVE_STDINT_H /**/ #define MOAB_HAVE_SYS_TYPES_H /**/ #define MOAB_HAVE_STDDEF_H /**/ #define MOAB_HAVE_STDLIB_H /**/ #define SIZEOF_VOID_P 8 #define MOAB_HAVE_SIZE_T /**/ #define MOAB_HAVE_PTRDIFF_T /**/ #define MB_VERSION "4.6.2" #define MB_VERSION_MAJOR 4 #define MB_VERSION_MINOR 6 #define MB_VERSION_PATCH 2 #define MB_VERSION_STRING "MOAB 4.6.2" #define HAVE_HDF5_H 1 #define HAVE_NETCDF_H 1 #define HAVE_PNETCDF_H 1 configure: exit 0