This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by MOAB configure 3.99, which was generated by GNU Autoconf 2.61. Invocation command line was $ ./configure --prefix=/Software/MOAB/parallel/gcc --with-cgm=/Software/CGM/parallel/gcc --with-mpi=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin --with-netcdf=/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2 --with-hdf5=/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2 --with-zlib=/Software/zlib-1.2.5/gcc --with-szip=/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2 --disable-production CC=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc CXX=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx F77=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 FC=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 F90=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 --disable-optimize --disable-debug ## --------- ## ## Platform. ## ## --------- ## hostname = palmer.ne.anl.gov uname -m = x86_64 uname -r = 2.6.18-194.3.1.el5 uname -s = Linux uname -v = #1 SMP Thu May 13 13:08:30 EDT 2010 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /Software/Autotools/bin PATH: . PATH: /home/jthomas/bin PATH: /Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/bin PATH: /Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/bin PATH: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin PATH: /Software/visit1.12.1/visit1.12.2/src/bin PATH: /opt/intel/Compiler/11.1/072/bin/intel64 PATH: /usr/local/star-ccm+/v5.02.009/starccm+5.02.009/star/bin/ PATH: /usr/local/star/v4.12/bin PATH: /usr/bin PATH: /bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /usr/X11R6/bin PATH: /home/jamest/bin PATH: . PATH: /home/jthomas/bin PATH: /Software/Autotools/bin PATH: /Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/bin PATH: /Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/bin PATH: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin PATH: /Software/visit1.12.1/visit1.12.2/src/bin PATH: /opt/intel/Compiler/11.1/072/bin/intel64 PATH: /usr/local/star-ccm+/v5.02.009/starccm+5.02.009/star/bin/ PATH: /usr/local/star/v4.12/bin PATH: /usr/bin PATH: /bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /usr/X11R6/bin PATH: /home/jamest/bin PATH: . PATH: /home/jthomas/bin PATH: /Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/bin PATH: /Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/bin PATH: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin PATH: /Software/visit1.12.1/visit1.12.2/src/bin PATH: /opt/intel/Compiler/11.1/072/bin/intel64 PATH: /usr/local/star-ccm+/v5.02.009/starccm+5.02.009/star/bin/ PATH: /usr/local/star/v4.12/bin PATH: /usr/bin PATH: /bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /usr/X11R6/bin PATH: /home/jamest/bin PATH: /opt/intel/Compiler/11.1/072/bin/intel64 PATH: /usr/local/star-ccm+/v5.02.009/starccm+5.02.009/star/bin/ PATH: /usr/local/star/v4.12/bin PATH: /usr/bin PATH: /bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /usr/X11R6/bin PATH: /home/jamest/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /usr/X11R6/bin PATH: /usr/local/cubit/v10.2/ PATH: /usr/local/visit/1.12.2/visit/bin PATH: /home/jthomas/bin PATH: /usr/local/cubit/v10.2/ PATH: /Software/Eclipse/ PATH: /usr/local/cubit/v10.2/ PATH: /Software/Eclipse/ PATH: /usr/local/cubit/v10.2/ PATH: /Software/Eclipse/ ## ----------- ## ## Core tests. ## ## ----------- ## configure:2167: checking build system type configure:2185: result: x86_64-unknown-linux-gnu configure:2207: checking host system type configure:2222: result: x86_64-unknown-linux-gnu configure:2244: checking target system type configure:2259: result: x86_64-unknown-linux-gnu configure:2302: checking for a BSD-compatible install configure:2358: result: /usr/bin/install -c configure:2369: checking whether build environment is sane configure:2412: result: yes configure:2440: checking for a thread-safe mkdir -p configure:2479: result: /bin/mkdir -p configure:2492: checking for gawk configure:2508: found /usr/bin/gawk configure:2519: result: gawk configure:2530: checking whether make sets $(MAKE) configure:2551: result: yes configure:2742: checking for sed configure:2770: result: /bin/sed configure:2805: checking for style of include used by make configure:2833: result: GNU configure:3464: checking for gcc configure:3491: result: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc configure:3729: checking for C compiler version configure:3736: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc --version >&5 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3739: $? = 0 configure:3746: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -v >&5 mpicc for MPICH2 version 1.2.1p1 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) configure:3749: $? = 0 configure:3756: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -V >&5 gcc: '-V' must come at the start of the command line configure:3759: $? = 1 configure:3782: checking for C compiler default output file name configure:3809: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc conftest.c >&5 configure:3812: $? = 0 configure:3850: result: a.out configure:3867: checking whether the C compiler works configure:3877: ./a.out configure:3880: $? = 0 configure:3897: result: yes configure:3904: checking whether we are cross compiling configure:3906: result: no configure:3909: checking for suffix of executables configure:3916: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest conftest.c >&5 configure:3919: $? = 0 configure:3943: result: configure:3949: checking for suffix of object files configure:3975: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c conftest.c >&5 configure:3978: $? = 0 configure:4001: result: o configure:4005: checking whether we are using the GNU C compiler configure:4034: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c conftest.c >&5 configure:4040: $? = 0 configure:4057: result: yes configure:4062: checking whether /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc accepts -g configure:4092: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g conftest.c >&5 configure:4098: $? = 0 configure:4197: result: yes configure:4214: checking for /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc option to accept ISO C89 configure:4288: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:4294: $? = 0 configure:4317: result: none needed configure:4337: checking dependency style of /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc configure:4428: result: gcc3 configure:4449: checking how to run the C preprocessor configure:4489: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E conftest.c configure:4495: $? = 0 configure:4526: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E conftest.c conftest.c:10:28: error: ac_nonexistent.h: No such file or directory configure:4532: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | /* end confdefs.h. */ | #include configure:4565: result: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E configure:4594: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E conftest.c configure:4600: $? = 0 configure:4631: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E conftest.c conftest.c:10:28: error: ac_nonexistent.h: No such file or directory configure:4637: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | /* end confdefs.h. */ | #include configure:4791: checking for C++ compiler version configure:4798: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx --version >&5 g++ (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4801: $? = 0 configure:4808: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -v >&5 mpicxx for MPICH2 version 1.2.1p1 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) configure:4811: $? = 0 configure:4818: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -V >&5 g++: '-V' must come at the start of the command line configure:4821: $? = 1 configure:4824: checking whether we are using the GNU C++ compiler configure:4853: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c conftest.cpp >&5 configure:4859: $? = 0 configure:4876: result: yes configure:4881: checking whether /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx accepts -g configure:4911: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -g conftest.cpp >&5 configure:4917: $? = 0 configure:5016: result: yes configure:5041: checking dependency style of /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx configure:5132: result: gcc3 configure:5152: checking how to run the C++ preprocessor configure:5188: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E conftest.cpp configure:5194: $? = 0 configure:5225: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E conftest.cpp conftest.cpp:10:28: error: ac_nonexistent.h: No such file or directory configure:5231: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | /* end confdefs.h. */ | #include configure:5264: result: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E configure:5293: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E conftest.cpp configure:5299: $? = 0 configure:5330: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E conftest.cpp conftest.cpp:10:28: error: ac_nonexistent.h: No such file or directory configure:5336: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | /* end confdefs.h. */ | #include configure:5485: checking for Fortran compiler version configure:5492: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 --version >&5 GNU Fortran (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) Copyright (C) 2007 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:5495: $? = 0 configure:5502: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 -v >&5 mpif90 for MPICH2 version 1.2.1p1 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) configure:5505: $? = 0 configure:5512: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 -V >&5 gfortran: '-V' must come at the start of the command line configure:5515: $? = 1 configure:5523: checking whether we are using the GNU Fortran compiler configure:5542: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 -c conftest.F >&5 configure:5548: $? = 0 configure:5565: result: yes configure:5571: checking whether /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 accepts -g configure:5588: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 -c -g conftest.f >&5 configure:5594: $? = 0 configure:5610: result: yes configure:5744: checking for Fortran 77 compiler version configure:5751: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 --version >&5 GNU Fortran (GCC) 3.4.6 20060404 (Red Hat 3.4.6-4) Copyright (C) 2006 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING or type the command `info -f g77 Copying'. configure:5754: $? = 0 configure:5761: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 -v >&5 mpif77 for MPICH2 version 1.2.1p1 Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.6/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-languages=c,c++,f77 --disable-libgcj --host=x86_64-redhat-linux Thread model: posix gcc version 3.4.6 20060404 (Red Hat 3.4.6-4) configure:5764: $? = 0 configure:5771: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 -V >&5 g77: `-V' must come at the start of the command line configure:5774: $? = 1 configure:5782: checking whether we are using the GNU Fortran 77 compiler configure:5801: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 -c conftest.F >&5 configure:5807: $? = 0 configure:5824: result: yes configure:5830: checking whether /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 accepts -g configure:5847: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 -c -g conftest.f >&5 configure:5853: $? = 0 configure:5869: result: yes configure:5907: checking whether ln -s works configure:5911: result: yes configure:5918: checking whether make sets $(MAKE) configure:5939: result: yes configure:6021: checking for a sed that does not truncate output configure:6077: result: /bin/sed configure:6080: checking for grep that handles long lines and -e configure:6154: result: /bin/grep configure:6159: checking for egrep configure:6237: result: /bin/grep -E configure:6253: checking for ld used by /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc configure:6320: result: /usr/bin/ld configure:6329: checking if the linker (/usr/bin/ld) is GNU ld configure:6344: result: yes configure:6349: checking for /usr/bin/ld option to reload object files configure:6356: result: -r configure:6374: checking for BSD-compatible nm configure:6423: result: /usr/bin/nm -B configure:6427: checking how to recognize dependent libraries configure:6613: result: pass_all configure:6702: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:6705: $? = 0 configure:6854: checking for ANSI C header files configure:6884: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:6890: $? = 0 configure:6989: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -g -O2 conftest.c -lm >&5 configure:6992: $? = 0 configure:6998: ./conftest configure:7001: $? = 0 configure:7018: result: yes configure:7042: checking for sys/types.h configure:7063: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:7069: $? = 0 configure:7085: result: yes configure:7042: checking for sys/stat.h configure:7063: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:7069: $? = 0 configure:7085: result: yes configure:7042: checking for stdlib.h configure:7063: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:7069: $? = 0 configure:7085: result: yes configure:7042: checking for string.h configure:7063: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:7069: $? = 0 configure:7085: result: yes configure:7042: checking for memory.h configure:7063: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:7069: $? = 0 configure:7085: result: yes configure:7042: checking for strings.h configure:7063: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:7069: $? = 0 configure:7085: result: yes configure:7042: checking for inttypes.h configure:7063: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:7069: $? = 0 configure:7085: result: yes configure:7042: checking for stdint.h configure:7063: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:7069: $? = 0 configure:7085: result: yes configure:7042: checking for unistd.h configure:7063: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:7069: $? = 0 configure:7085: result: yes configure:7112: checking dlfcn.h usability configure:7129: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 configure:7135: $? = 0 configure:7149: result: yes configure:7153: checking dlfcn.h presence configure:7168: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E conftest.c configure:7174: $? = 0 configure:7188: result: yes configure:7216: checking for dlfcn.h configure:7224: result: yes configure:7247: checking how to run the C++ preprocessor configure:7359: result: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E configure:7388: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E conftest.cpp configure:7394: $? = 0 configure:7425: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E conftest.cpp conftest.cpp:21:28: error: ac_nonexistent.h: No such file or directory configure:7431: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:7475: checking the maximum length of command line arguments configure:7587: result: 98304 configure:7599: checking command to parse /usr/bin/nm -B output from /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc object configure:7704: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -g -O2 conftest.cpp >&5 configure:7707: $? = 0 configure:7711: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:7714: $? = 0 configure:7766: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -o conftest -g -O2 conftest.cpp conftstm.o >&5 configure:7769: $? = 0 configure:7807: result: ok configure:7811: checking for objdir configure:7826: result: .libs configure:7918: checking for ar configure:7934: found /usr/bin/ar configure:7945: result: ar configure:8014: checking for ranlib configure:8030: found /usr/bin/ranlib configure:8041: result: ranlib configure:8110: checking for strip configure:8126: found /usr/bin/strip configure:8137: result: strip configure:8735: checking if /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc supports -fno-rtti -fno-exceptions configure:8753: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:8757: $? = 0 configure:8770: result: no configure:8785: checking for /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc option to produce PIC configure:9017: result: -fPIC configure:9025: checking if /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc PIC flag -fPIC works configure:9043: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 -fPIC -DPIC conftest.c >&5 configure:9047: $? = 0 configure:9060: result: yes configure:9088: checking if /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc static flag -static works configure:9116: result: yes configure:9126: checking if /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc supports -c -o file.o configure:9147: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:9151: $? = 0 configure:9173: result: yes configure:9199: checking whether the /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10180: result: yes configure:10247: checking dynamic linker characteristics configure:10861: result: GNU/Linux ld.so configure:10885: checking how to hardcode library paths into programs configure:10910: result: immediate configure:10924: checking whether stripping libraries is possible configure:10929: result: yes configure:11731: checking if libtool supports shared libraries configure:11733: result: yes configure:11736: checking whether to build shared libraries configure:11757: result: no configure:11760: checking whether to build static libraries configure:11764: result: yes configure:11858: creating libtool configure:12451: checking for ld used by /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx configure:12518: result: /usr/bin/ld -m elf_x86_64 configure:12527: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:12542: result: yes configure:12593: checking whether the /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:13539: result: yes configure:13556: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -g -O2 conftest.cpp >&5 configure:13559: $? = 0 configure:13715: checking for /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx option to produce PIC configure:13999: result: -fPIC configure:14007: checking if /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx PIC flag -fPIC works configure:14025: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -g -O2 -fPIC -DPIC conftest.cpp >&5 configure:14029: $? = 0 configure:14042: result: yes configure:14070: checking if /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx static flag -static works configure:14098: result: yes configure:14108: checking if /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx supports -c -o file.o configure:14129: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:14133: $? = 0 configure:14155: result: yes configure:14181: checking whether the /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14210: result: yes configure:14277: checking dynamic linker characteristics configure:14839: result: GNU/Linux ld.so configure:14863: checking how to hardcode library paths into programs configure:14888: result: immediate configure:15427: checking if libtool supports shared libraries configure:15429: result: yes configure:15432: checking whether to build shared libraries configure:15452: result: no configure:15455: checking whether to build static libraries configure:15459: result: yes configure:15469: checking for /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 option to produce PIC configure:15701: result: -fPIC configure:15709: checking if /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 PIC flag -fPIC works configure:15727: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 -c -g -O2 -fPIC conftest.f >&5 configure:15731: $? = 0 configure:15744: result: yes configure:15772: checking if /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 static flag -static works configure:15800: result: yes configure:15810: checking if /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 supports -c -o file.o configure:15831: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:15835: $? = 0 configure:15857: result: yes configure:15883: checking whether the /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:16844: result: yes configure:16911: checking dynamic linker characteristics configure:17473: result: GNU/Linux ld.so configure:17497: checking how to hardcode library paths into programs configure:17522: result: immediate configure:21149: checking for known C compilers configure:21180: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -g -O2 conftest.c >&5 conftest.c:23: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me' configure:21186: $? = 1 configure: failed program was: | | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #ifndef __INTEL_COMPILER | choke me | #endif | int | main () | { | | ; | return 0; | } configure:22010: result: GNU configure:22018: checking for known compiler/OS combinations configure:22084: result: GNU:x86_64 configure:22098: checking for known c++ compilers configure:22129: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -g -O2 conftest.cpp >&5 conftest.cpp:23: error: 'choke' does not name a type configure:22135: $? = 1 configure: failed program was: | | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #ifndef __INTEL_COMPILER | choke me | #endif | int | main () | { | | ; | return 0; | } configure:22914: result: GNU configure:22922: checking for known compiler/OS combinations configure:22989: result: GNU:x86_64 configure:23119: checking for gunzip configure:23135: found /usr/bin/gunzip configure:23146: result: gunzip -c configure:23156: checking for gzip configure:23183: result: gunzip -c configure:23193: checking for zcat configure:23220: result: gunzip -c configure:23243: checking if C++ compiler supports template class specialization configure:23277: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -Wall -pipe conftest.cpp >&5 configure:23283: $? = 0 configure:23304: result: yes configure:23314: checking if C++ compiler supports template function specialization configure:23349: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -Wall -pipe conftest.cpp >&5 configure:23355: $? = 0 configure:23376: result: yes configure:23393: checking how to get verbose linking output from /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 configure:23409: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 -c -g -O2 conftest.f >&5 configure:23415: $? = 0 configure:23437: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 -o conftest -g -O2 -v conftest.f -lm mpif90 for MPICH2 version 1.2.1p1 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) /usr/libexec/gcc/x86_64-redhat-linux/4.1.2/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -O2 -version -I/Software/mpich2-1.2.1p1-gcc-4.1.2/include -I/Software/mpich2-1.2.1p1-gcc-4.1.2/include -I /usr/lib/gcc/x86_64-redhat-linux/4.1.2/finclude -o /tmp/ccLL7Nbx.s GNU F95 version 4.1.2 20080704 (Red Hat 4.1.2-48) (x86_64-redhat-linux) compiled by GNU C version 4.1.2 20080704 (Red Hat 4.1.2-48). GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -V -Qy -o /tmp/ccGZhZqW.o /tmp/ccLL7Nbx.s GNU assembler version 2.17.50.0.6-14.el5 (x86_64-redhat-linux) using BFD version 2.17.50.0.6-14.el5 20061020 /usr/libexec/gcc/x86_64-redhat-linux/4.1.2/collect2 --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.1.2/crtbegin.o -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 /tmp/ccGZhZqW.o -lgfortranbegin -lgfortran -lm -lmpichf90 -lmpichf90 -lmpich -lopa -lpthread -lrt -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.1.2/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/crtn.o configure:23503: result: -v configure:23505: checking for Fortran libraries of /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 configure:23528: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 -o conftest -g -O2 -v conftest.f -lm mpif90 for MPICH2 version 1.2.1p1 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) /usr/libexec/gcc/x86_64-redhat-linux/4.1.2/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -O2 -version -I/Software/mpich2-1.2.1p1-gcc-4.1.2/include -I/Software/mpich2-1.2.1p1-gcc-4.1.2/include -I /usr/lib/gcc/x86_64-redhat-linux/4.1.2/finclude -o /tmp/ccY2qm9R.s GNU F95 version 4.1.2 20080704 (Red Hat 4.1.2-48) (x86_64-redhat-linux) compiled by GNU C version 4.1.2 20080704 (Red Hat 4.1.2-48). GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -V -Qy -o /tmp/cc4og3xC.o /tmp/ccY2qm9R.s GNU assembler version 2.17.50.0.6-14.el5 (x86_64-redhat-linux) using BFD version 2.17.50.0.6-14.el5 20061020 /usr/libexec/gcc/x86_64-redhat-linux/4.1.2/collect2 --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.1.2/crtbegin.o -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 /tmp/cc4og3xC.o -lgfortranbegin -lgfortran -lm -lmpichf90 -lmpichf90 -lmpich -lopa -lpthread -lrt -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.1.2/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/crtn.o configure:23702: result: -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -lgfortranbegin -lgfortran -lm -lmpichf90 -lmpich -lopa -lpthread -lrt configure:23718: checking for dummy main to link with Fortran libraries configure:23762: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe conftest.c -lm -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -lgfortranbegin -lgfortran -lm -lmpichf90 -lmpich -lopa -lpthread -lrt >&5 configure:23768: $? = 0 configure:23849: result: none configure:23886: checking for Fortran name-mangling scheme configure:23905: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 -c -g -O2 conftest.f >&5 configure:23911: $? = 0 configure:23966: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe conftest.c cfortran_test.o -lm -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -lgfortranbegin -lgfortran -lm -lmpichf90 -lmpich -lopa -lpthread -lrt >&5 /tmp/ccENiJdS.o: In function `main': conftest.c:(.text+0xa): undefined reference to `foobar' collect2: ld returned 1 exit status configure:23972: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:23966: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe conftest.c cfortran_test.o -lm -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -lgfortranbegin -lgfortran -lm -lmpichf90 -lmpich -lopa -lpthread -lrt >&5 configure:23972: $? = 0 configure:24051: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe conftest.c cfortran_test.o -lm -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -lgfortranbegin -lgfortran -lm -lmpichf90 -lmpich -lopa -lpthread -lrt >&5 configure:24057: $? = 0 configure:24114: result: lower case, underscore, no extra underscore configure:24219: checking for vsnprintf configure:24283: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe conftest.c -lm >&5 conftest.c:46: warning: conflicting types for built-in function 'vsnprintf' configure:24289: $? = 0 configure:24306: result: yes configure:24344: checking for inttypes.h configure:24349: result: yes configure:24478: checking for stdint.h configure:24483: result: yes configure:24612: checking for sys/types.h configure:24617: result: yes configure:24755: checking stddef.h usability configure:24772: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe conftest.c >&5 configure:24778: $? = 0 configure:24792: result: yes configure:24796: checking stddef.h presence configure:24811: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E conftest.c configure:24817: $? = 0 configure:24831: result: yes configure:24859: checking for stddef.h configure:24866: result: yes configure:24880: checking for stdlib.h configure:24885: result: yes configure:25014: checking for void * configure:25052: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe conftest.c >&5 configure:25058: $? = 0 configure:25073: result: yes configure:25080: checking size of void * configure:25430: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe conftest.c -lm >&5 configure:25433: $? = 0 configure:25439: ./conftest configure:25442: $? = 0 configure:25465: result: 8 configure:25638: checking for size_t configure:25676: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe conftest.c >&5 configure:25682: $? = 0 configure:25697: result: yes configure:26176: checking for ptrdiff_t configure:26214: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe conftest.c >&5 configure:26220: $? = 0 configure:26235: result: yes configure:27252: checking size of EntityHandle configure:27254: result: 8 configure:27269: checking if iMesh support is to be built configure:27271: result: yes configure:27289: checking if iGeom support is to be built configure:27291: result: no configure:27391: checking ieeefp.h usability configure:27408: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe conftest.c >&5 conftest.c:68:20: error: ieeefp.h: No such file or directory configure:27414: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:27428: result: no configure:27432: checking ieeefp.h presence configure:27447: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E conftest.c conftest.c:35:20: error: ieeefp.h: No such file or directory configure:27453: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | /* end confdefs.h. */ | #include configure:27467: result: no configure:27495: checking for ieeefp.h configure:27502: result: no configure:27650: checking for C++ unordered_map configure:27691: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -Wall -pipe conftest.cpp >&5 conftest.cpp:35:25: error: unordered_map: No such file or directory conftest.cpp: In function 'int main()': conftest.cpp:47: error: 'unordered_map' is not a member of 'std' conftest.cpp:47: error: expected primary-expression before 'int' conftest.cpp:47: error: expected `;' before 'int' configure:27697: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | /* end confdefs.h. */ | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | std::unordered_map map | ; | return 0; | } configure:27741: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -Wall -pipe conftest.cpp >&5 configure:27747: $? = 0 configure:27820: result: std::tr1 configure:27854: checking mpi.h usability configure:27871: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 configure:27877: $? = 0 configure:27891: result: yes configure:27895: checking mpi.h presence configure:27910: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c configure:27916: $? = 0 configure:27930: result: yes configure:27958: checking for mpi.h configure:27965: result: yes configure:27985: checking If mpi.h conflicts with C headers in C++ configure:28022: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp configure:28028: $? = 0 configure:28033: result: no configure:28665: checking for mpiexec configure:28681: found /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpiexec configure:28692: result: mpiexec configure:28788: checking for deflate in -lz configure:28831: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -L/Software/zlib-1.2.5/gcc/lib conftest.c -lz -lm >&5 configure:28837: $? = 0 configure:28855: result: yes configure:28895: checking for SZ_Decompress in -lsz configure:28938: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -L/Software/zlib-1.2.5/gcc/lib -L/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2/lib conftest.c -lsz -lm >&5 configure:28944: $? = 0 configure:28962: result: yes configure:29004: checking if HDF5 support is enabled configure:29020: result: yes configure:29030: checking for gpfs_stat in -lgpfs configure:29073: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c -lgpfs -lm >&5 /usr/bin/ld: cannot find -lgpfs collect2: ld returned 1 exit status configure:29079: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char gpfs_stat (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return gpfs_stat (); | ; | return 0; | } configure:29097: result: no configure:29156: checking hdf5.h usability configure:29173: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe -I/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/include -isystem /Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 configure:29179: $? = 0 configure:29193: result: yes configure:29197: checking hdf5.h presence configure:29212: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E -I/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/include -isystem /Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c configure:29218: $? = 0 configure:29232: result: yes configure:29260: checking for hdf5.h configure:29268: result: yes configure:29286: checking for H5Fopen in -lhdf5 configure:29329: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe -I/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/include -isystem /Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -L/Software/zlib-1.2.5/gcc/lib -L/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2/lib -L/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/lib conftest.c -lhdf5 -lm >&5 configure:29335: $? = 0 configure:29354: result: yes configure:29656: checking for H5Pset_fapl_mpio in -lhdf5 configure:29700: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -o conftest -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -L/Software/zlib-1.2.5/gcc/lib -L/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2/lib -L/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/lib conftest.c -lhdf5 -lhdf5 -lm >&5 /tmp/cca5gGU3.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5Pset_fapl_mpio' collect2: ld returned 1 exit status configure:29706: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Pset_fapl_mpio (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return H5Pset_fapl_mpio (); | ; | return 0; | } configure:29724: result: no configure:29729: WARNING: "libhdf5 library does not include parallel support. Parallel HDF5 I/O disabled" configure:29756: checking if CCMIO support is enabled configure:29773: result: yes configure:29823: checking ccmio.h usability configure:29840: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 conftest.c:69:19: error: ccmio.h: No such file or directory configure:29846: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:29860: result: no configure:29864: checking ccmio.h presence configure:29879: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c conftest.c:36:19: error: ccmio.h: No such file or directory configure:29885: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:29899: result: no configure:29927: checking for ccmio.h configure:29935: result: no configure:29945: WARNING: Ccmio header not found. configure:29966: checking ccmioutility.h usability configure:29983: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 conftest.c:69:26: error: ccmioutility.h: No such file or directory configure:29989: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:30003: result: no configure:30007: checking ccmioutility.h presence configure:30022: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c conftest.c:36:26: error: ccmioutility.h: No such file or directory configure:30028: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:30042: result: no configure:30070: checking for ccmioutility.h configure:30078: result: no configure:30088: WARNING: Ccmio header not found. configure:30109: checking ccmiocore.h usability configure:30126: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 conftest.c:69:23: error: ccmiocore.h: No such file or directory configure:30132: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:30146: result: no configure:30150: checking ccmiocore.h presence configure:30165: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c conftest.c:36:23: error: ccmiocore.h: No such file or directory configure:30171: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:30185: result: no configure:30213: checking for ccmiocore.h configure:30221: result: no configure:30231: WARNING: Ccmio header not found. configure:30246: WARNING: "Ccmio support disabled" configure:30286: checking if NetCDF support is enabled configure:30303: result: yes configure:30329: checking strstream.h usability configure:30346: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp >&5 conftest.cpp:69:23: error: strstream.h: No such file or directory configure:30352: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:30366: result: no configure:30370: checking strstream.h presence configure:30385: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp conftest.cpp:36:23: error: strstream.h: No such file or directory configure:30391: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:30405: result: no configure:30433: checking for strstream.h configure:30440: result: no configure:30458: checking sstream.h usability configure:30475: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp >&5 conftest.cpp:69:21: error: sstream.h: No such file or directory configure:30481: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:30495: result: no configure:30499: checking sstream.h presence configure:30514: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp conftest.cpp:36:21: error: sstream.h: No such file or directory configure:30520: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:30534: result: no configure:30562: checking for sstream.h configure:30569: result: no configure:30587: checking strstream usability configure:30604: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp >&5 In file included from /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/backward/strstream:51, from conftest.cpp:69: /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the header for the header for C++ includes, or instead of the deprecated header . To disable this warning use -Wno-deprecated. configure:30610: $? = 0 configure:30624: result: yes configure:30628: checking strstream presence configure:30643: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp In file included from /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/backward/strstream:51, from conftest.cpp:36: /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the header for the header for C++ includes, or instead of the deprecated header . To disable this warning use -Wno-deprecated. configure:30649: $? = 0 configure:30663: result: yes configure:30691: checking for strstream configure:30698: result: yes configure:30900: checking netcdf.h usability configure:30917: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe -I/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 configure:30923: $? = 0 configure:30937: result: yes configure:30941: checking netcdf.h presence configure:30956: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E -I/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c configure:30962: $? = 0 configure:30976: result: yes configure:31004: checking for netcdf.h configure:31012: result: yes configure:31029: checking if NC_MAX_DIMS is at least 65536 configure:31060: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe -I/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 conftest.c: In function 'main': conftest.c:49: error: size of array 'arr' is negative conftest.c:49: warning: unused variable 'arr' configure:31066: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | int arr[1 + (int)(NC_MAX_DIMS) - (int)(65536)]; | ; | return 0; | } configure:31077: result: no configure:31084: checking if NC_MAX_VARS is at least 524288 configure:31115: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -c -Wall -pipe -I/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 conftest.c: In function 'main': conftest.c:49: error: size of array 'arr' is negative conftest.c:49: warning: unused variable 'arr' configure:31121: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | int arr[1 + (int)(NC_MAX_VARS) - (int)(524288)]; | ; | return 0; | } configure:31132: result: no configure:31139: checking for netcdf.hh configure:31177: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -c -Wall -pipe -I/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp >&5 configure:31183: $? = 0 configure:31247: result: yes configure:31258: checking for netcdf_c++ library configure:31291: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -o conftest -Wall -pipe -I/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -L/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/lib -L/Software/zlib-1.2.5/gcc/lib -L/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2/lib -L/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/lib -L/Software/zlib-1.2.5/gcc/lib -L/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2/lib -L/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/lib conftest.cpp -lm -lnetcdf_c++ -lnetcdf >&5 configure:31297: $? = 0 configure:31303: result: yes configure:31676: checking if mbconvert is to be built configure:31678: result: yes configure:31703: checking if hexmodops is to be built configure:31705: result: yes configure:31730: checking if mbperf is to be built configure:31732: result: yes configure:31757: checking if qvdual is to be built configure:31759: result: no configure:31784: checking if mbsize is to be built configure:31786: result: yes configure:31811: checking if mbskin is to be built configure:31813: result: yes configure:31838: checking if mbtagprop is to be built configure:31840: result: yes configure:31865: checking if mbmem is to be built configure:31867: result: yes configure:31892: checking if mcnpmit is to be built configure:31894: result: no configure:31919: checking if mbcoupler is to be built configure:31921: result: no configure:31946: checking if spheredecomp is to be built configure:31948: result: yes configure:31973: checking if mbsurfplot is to be built configure:31975: result: yes configure:32000: checking if mbzoltan is to be built configure:32002: result: no configure:32027: checking if dagmc is to be built configure:32029: result: yes configure:32054: checking if gsets is to be built configure:32056: result: yes configure:32081: checking if mbdepth is to be built configure:32083: result: yes configure:32108: checking if refiner is to be built configure:32110: result: no configure:37500: checking for /Software/CGM/parallel/gcc/lib/cgm.make configure:37516: result: yes configure:37560: checking Checking for GeometryQueryTool::ray_fire(RefFace*,...) configure:37737: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -o conftest -Wall -pipe -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/Software/CGM/parallel/gcc/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -R/Software/CGM/parallel/gcc/lib -R/usr/local/cubit/v10.2//bin -L/Software/CGM/parallel/gcc/lib -L/usr/local/cubit/v10.2//bin -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/Software/CGM/parallel/gcc/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp -lcgm -lcubiti19 -lm >&5 g++: unrecognized option '-R/Software/CGM/parallel/gcc/lib' g++: unrecognized option '-R/usr/local/cubit/v10.2//bin' /usr/bin/ld: warning: libstdc++.so.5, needed by /usr/local/cubit/v10.2//bin/libcubiti19.so, may conflict with libstdc++.so.6 /tmp/ccLMgHVc.o: In function `main': conftest.cpp:(.text+0x74): undefined reference to `GeometryQueryTool::fire_ray(RefFace*, CubitVector, CubitVector, DLIList&)' collect2: ld returned 1 exit status configure:37743: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H | #define MOAB_HAVE_STDINT_H | #define MOAB_HAVE_SYS_TYPES_H | #define MOAB_HAVE_STDDEF_H | #define MOAB_HAVE_STDLIB_H | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T | #define MOAB_HAVE_PTRDIFF_T | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | #include "GeometryQueryTool.hpp" | #include "CubitVector.hpp" | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | CubitVector a,b; | DLIList c; | GeometryQueryTool::instance()->fire_ray((RefFace*)0, a, b, c ); | | ; | return 0; | } configure:37755: result: no configure:38150: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by MOAB config.status 3.99, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on palmer.ne.anl.gov config.status:812: creating Makefile config.status:812: creating moab.make config.status:812: creating src/Makefile config.status:812: creating src/io/Makefile config.status:812: creating src/io/mhdf/Makefile config.status:812: creating src/parallel/Makefile config.status:812: creating src/oldinc/Makefile config.status:812: creating test/Makefile config.status:812: creating test/h5file/Makefile config.status:812: creating test/dual/Makefile config.status:812: creating test/obb/Makefile config.status:812: creating test/perf/Makefile config.status:812: creating test/io/Makefile config.status:812: creating test/parallel/Makefile config.status:812: creating test/oldinc/Makefile config.status:812: creating itaps/Makefile config.status:812: creating itaps/imesh/Makefile config.status:812: creating itaps/imesh/iMesh-Defs.inc config.status:812: creating itaps/igeom/Makefile config.status:812: creating itaps/igeom/iGeom-Defs.inc config.status:812: creating tools/Makefile config.status:812: creating tools/refiner/Makefile config.status:812: creating tools/mbperf/Makefile config.status:812: creating tools/mbcoupler/Makefile config.status:812: creating tools/mbzoltan/Config.moab config.status:812: creating tools/mbzoltan/Makefile config.status:812: creating tools/mcnpmit/Makefile config.status:812: creating tools/qvdual/Makefile config.status:812: creating tools/dagmc/Makefile config.status:812: creating doc/Makefile config.status:812: creating doc/user.dox config.status:812: creating examples/Makefile config.status:812: creating examples/examples.make config.status:812: creating examples/simple/makefile config.status:812: creating MeshFiles/Makefile config.status:812: creating MeshFiles/unittest/Makefile config.status:812: creating MeshFiles/unittest/io/Makefile config.status:812: creating config.h config.status:812: creating src/moab/Version.h config.status:812: creating src/moab/EntityHandle.hpp config.status:1055: src/moab/EntityHandle.hpp is unchanged config.status:812: creating src/parallel/moab_mpi_config.h config.status:1055: src/parallel/moab_mpi_config.h is unchanged config.status:812: creating src/FCDefs.h config.status:1102: executing depfiles commands config.status:1102: executing src/MOAB_FCDefs.h commands configure:39614: result: C: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map configure:39616: result: C++: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -Wall -pipe -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map configure:39619: result: Fortran: /Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 -g -O2 configure:39674: WARNING: ************************************************************************* * The configured NetCDF library does not have sufficient constant limits * to support reading of ExodusII with large numbers of blocks or sidesets * or nodesets. Please consider re-compiling your NetCDF library after * increasing the constants NC_MAX_DIMS and NC_MAX_VARS in netcdf.h to * 65536 and 524288, respectively. See: * http://cubit.sandia.gov/help-version11.1/finite_element_model/export/exporting_exodus2_file.htm ************************************************************************* configure:39692: WARNING: ************************************************************************* * MOAB has been configured with parallel and HDF5 support * but the configured HDF5 library does not support parallel IO. * Some parallel IO capabilities will be disabled. ************************************************************************* ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set=set ac_cv_env_CXX_value=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx ac_cv_env_F77_set=set ac_cv_env_F77_value=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77 ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set=set ac_cv_env_FC_value=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90 ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPIEXEC_NP_set= ac_cv_env_MPIEXEC_NP_value= ac_cv_env_MPIEXEC_set= ac_cv_env_MPIEXEC_value= ac_cv_env_NP_set= ac_cv_env_NP_value= ac_cv_env_QTDIR_set=set ac_cv_env_QTDIR_value=/usr/lib64/qt-3.3 ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_fc_compiler_gnu=yes ac_cv_fc_dummy_main=none ac_cv_fc_libs=' -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -lgfortranbegin -lgfortran -lm -lmpichf90 -lmpich -lopa -lpthread -lrt' ac_cv_fc_mangling='lower case, underscore, no extra underscore' ac_cv_file__Software_CGM_parallel_gcc_lib_cgm_make=yes ac_cv_fortran_dummy_main=none ac_cv_func_vsnprintf=yes ac_cv_header_ccmio_h=no ac_cv_header_ccmiocore_h=no ac_cv_header_ccmioutility_h=no ac_cv_header_dlfcn_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_ieeefp_h=no ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_mpi_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_sstream_h=no ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_strstream=yes ac_cv_header_strstream_h=no ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_gpfs_gpfs_stat=no ac_cv_lib_hdf5_H5Pset_fapl_mpio=no ac_cv_lib_hdf5___H5Fopen=yes ac_cv_lib_sz_SZ_Decompress=yes ac_cv_lib_z_deflate=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E' ac_cv_prog_CXXCPP='/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E' ac_cv_prog_MPIEXEC=mpiexec ac_cv_prog_SED=/bin/sed ac_cv_prog_ZCAT='gunzip -c' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_fc_g=yes ac_cv_prog_fc_v=-v ac_cv_prog_make_make_set=yes ac_cv_sizeof_void_p=8 ac_cv_target=x86_64-unknown-linux-gnu ac_cv_type_ptrdiff_t=yes ac_cv_type_size_t=yes ac_cv_type_void_p=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_SED=/bin/sed lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_compiler_static_works_F77=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \([^ ]*\) \([^ ]*\)$/ {"\2", (lt_ptr) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^. .* \(.*\)$/extern int \1;/p'\''' lt_cv_sys_lib_dlsearch_path_spec='/lib /usr/lib /usr/lib/qt-3.3/lib /usr/lib64/qt-3.3/lib ' lt_cv_sys_lib_search_path_spec='/opt/intel/Compiler/11.1/072/lib/intel64 /usr/lib/gcc/x86_64-redhat-linux/4.1.2 /usr/lib64 /lib64' lt_cv_sys_max_cmd_len=98304 lt_lt_cv_prog_compiler_c_o='"yes"' lt_lt_cv_prog_compiler_c_o_CXX='"yes"' lt_lt_cv_prog_compiler_c_o_F77='"yes"' lt_lt_cv_sys_global_symbol_pipe='"sed -n -e '\''s/^.*[ ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ ][ ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'\''"' lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'\''"' lt_lt_cv_sys_global_symbol_to_cdecl='"sed -n -e '\''s/^. .* \\(.*\\)\$/extern int \\1;/p'\''"' mk_cv_cxx_unordered_map=std::tr1 snl_cv_template_func_specialization=yes snl_cv_template_specialization=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/jthomas/Software/moab-3.99/config/missing --run aclocal-1.10' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /home/jthomas/Software/moab-3.99/config/missing --run tar' AM_CFLAGS='' AM_CPPFLAGS='-I/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/include -I/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/include -isystem /Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DNETCDF_FILE -DCGM' AM_CXXFLAGS='' AM_LDFLAGS=' -R/Software/CGM/parallel/gcc/lib -R/usr/local/cubit/v10.2//bin -L/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/lib -L/Software/zlib-1.2.5/gcc/lib -L/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2/lib -L/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/lib -L/Software/CGM/parallel/gcc/lib -L/usr/local/cubit/v10.2//bin' AR='ar' AUTOCONF='${SHELL} /home/jthomas/Software/moab-3.99/config/missing --run autoconf' AUTOHEADER='${SHELL} /home/jthomas/Software/moab-3.99/config/missing --run autoheader' AUTOMAKE='${SHELL} /home/jthomas/Software/moab-3.99/config/missing --run automake-1.10' AWK='gawk' CC='/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc' CCDEPMODE='depmode=gcc3' CCMIO_FILE_FALSE='' CCMIO_FILE_TRUE='#' CCMIO_LIBS='' CFLAGS=' -Wall -pipe' CGM_CPPFLAGS='-DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/Software/CGM/parallel/gcc/include' CGM_LDFLAGS='-L/Software/CGM/parallel/gcc/lib -L/usr/local/cubit/v10.2//bin' CGM_LIBS='-lcgm -lcubiti19' CGM_LTFLAGS='-R/Software/CGM/parallel/gcc/lib -R/usr/local/cubit/v10.2//bin' CPP='/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc -E' CPPFLAGS=' -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map' CXX='/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx' CXXCPP='/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicxx -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS=' -Wall -pipe' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DISTCHECK_CONFIGURE_FLAGS=' --with-zlib="/Software/zlib-1.2.5/gcc" --with-szip="/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2" --with-hdf5="/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2" --with-netcdf="/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2" --with-cgm="/Software/CGM/parallel/gcc"' DOXYGEN='' DSYMUTIL='' ECHO='echo' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_DOXYGEN_FALSE='' ENABLE_DOXYGEN_TRUE='#' ENABLE_dagmc_FALSE='#' ENABLE_dagmc_TRUE='' ENABLE_gsets_FALSE='#' ENABLE_gsets_TRUE='' ENABLE_hexmodops_FALSE='#' ENABLE_hexmodops_TRUE='' ENABLE_igeom_FALSE='' ENABLE_igeom_TRUE='#' ENABLE_imesh_FALSE='#' ENABLE_imesh_TRUE='' ENABLE_mbconvert_FALSE='#' ENABLE_mbconvert_TRUE='' ENABLE_mbcoupler_FALSE='' ENABLE_mbcoupler_TRUE='#' ENABLE_mbdepth_FALSE='#' ENABLE_mbdepth_TRUE='' ENABLE_mbmem_FALSE='#' ENABLE_mbmem_TRUE='' ENABLE_mbperf_FALSE='#' ENABLE_mbperf_TRUE='' ENABLE_mbsize_FALSE='#' ENABLE_mbsize_TRUE='' ENABLE_mbskin_FALSE='#' ENABLE_mbskin_TRUE='' ENABLE_mbsurfplot_FALSE='#' ENABLE_mbsurfplot_TRUE='' ENABLE_mbtagprop_FALSE='#' ENABLE_mbtagprop_TRUE='' ENABLE_mbzoltan_FALSE='' ENABLE_mbzoltan_TRUE='#' ENABLE_mcnpmit_FALSE='' ENABLE_mcnpmit_TRUE='#' ENABLE_qvdual_FALSE='' ENABLE_qvdual_TRUE='#' ENABLE_refiner_FALSE='' ENABLE_refiner_TRUE='#' ENABLE_spheredecomp_FALSE='#' ENABLE_spheredecomp_TRUE='' EXEEXT='' EXPORT_LDFLAGS='-L/Software/visit1.12.1/visit/netcdf/3.6.3/linux-x86_64_gcc-4.1.2/lib -L/Software/zlib-1.2.5/gcc/lib -L/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2/lib -L/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/lib -L/Software/CGM/parallel/gcc/lib -L/usr/local/cubit/v10.2//bin' EXPORT_LTFLAGS=' -R/Software/CGM/parallel/gcc/lib -R/usr/local/cubit/v10.2//bin' F77='/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif77' FC='/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpif90' FCFLAGS='-g -O2' FCLIBS=' -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -lgfortranbegin -lgfortran -lm -lmpichf90 -lmpich -lopa -lpthread -lrt' FFLAGS='-g -O2' GREP='/bin/grep' HAVE_CGM_FALSE='#' HAVE_CGM_TRUE='' HAVE_ZCAT_FALSE='' HAVE_ZCAT_TRUE='#' HDF5_FILE_FALSE='#' HDF5_FILE_TRUE='' HDF5_LIBS='-lhdf5 ' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS=' -L/Software/zlib-1.2.5/gcc/lib -L/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2/lib -L/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/lib -L/Software/zlib-1.2.5/gcc/lib -L/Software/visit1.12.1/visit/szip/2.1/linux-x86_64_gcc-4.1.2/lib -L/Software/visit1.12.1/visit/hdf5/1.8.2/linux-x86_64_gcc-4.1.2/lib' LIBOBJS='' LIBS='-lm' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /home/jthomas/Software/moab-3.99/config/missing --run makeinfo' MOAB_CGM_DEFINES='' MOAB_CXX_LIBS='-lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm -lgcc_s -lc -lgcc_s' MOAB_CXX_LINKFLAGS='-L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/Software/mpich2-1.2.1p1-gcc-4.1.2/lib -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/opt/intel/Compiler/11.1/072/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64' MOC='' MPIEXEC='mpiexec' MPIEXEC_NP='-np' NETCDF_FILE_FALSE='#' NETCDF_FILE_TRUE='' NETCDF_LIBS='-lnetcdf_c++ -lnetcdf' NMEDIT='' NP='2' OBJEXT='o' OLD_HEADERS_FALSE='#' OLD_HEADERS_TRUE='' PACKAGE='moab' PACKAGE_BUGREPORT='' PACKAGE_NAME='MOAB' PACKAGE_STRING='MOAB 3.99' PACKAGE_TARNAME='moab' PACKAGE_VERSION='3.99' PARALLEL_FALSE='#' PARALLEL_HDF5_FALSE='' PARALLEL_HDF5_TRUE='#' PARALLEL_TRUE='' PATH_SEPARATOR=':' QTDIR='/usr/lib64/qt-3.3' QVDUAL_INCLUDES='' QVDUAL_LIBS='' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' UIC='' USE_MPIEXEC_FALSE='#' USE_MPIEXEC_TRUE='' USE_MPI_FALSE='#' USE_MPI_TRUE='' VERSION='3.99' VTK_LIB_DIR='' XMKMF='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' ZCAT='gunzip -c' ZOLTAN_INC_FLAGS='' ZOLTAN_LIBS='' ZOLTAN_LIB_FLAGS='' ac_ct_CC='/Software/mpich2-1.2.1p1-gcc-4.1.2/bin/mpicc' ac_ct_CXX='' ac_ct_F77='' ac_ct_FC='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='$(SHELL) /home/jthomas/Software/moab-3.99/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/Software/MOAB/parallel/gcc' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-unknown-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='unknown' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "MOAB" #define PACKAGE_TARNAME "moab" #define PACKAGE_VERSION "3.99" #define PACKAGE_STRING "MOAB 3.99" #define PACKAGE_BUGREPORT "" #define PACKAGE "moab" #define VERSION "3.99" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define FC_FUNC(name,NAME) name ## _ #define FC_FUNC_(name,NAME) name ## _ #define MOAB_HAVE_INTTYPES_H #define MOAB_HAVE_STDINT_H #define MOAB_HAVE_SYS_TYPES_H #define MOAB_HAVE_STDDEF_H #define MOAB_HAVE_STDLIB_H #define SIZEOF_VOID_P 8 #define MOAB_HAVE_SIZE_T #define MOAB_HAVE_PTRDIFF_T #define MB_VERSION "3.99" #define MB_VERSION_MAJOR 3 #define MB_VERSION_MINOR 99 #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" #define HAVE_HDF5_H 1 #define HAVE_NETCDF_H 1 configure: exit 0