This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by MOAB configure 3.99, which was generated by GNU Autoconf 2.65. Invocation command line was $ ../configure --prefix=/home/jed/usr/ --enable-debug --enable-shared --enable-mbconvert --enable-mbsize --enable-mbtagprop --enable-mbzoltan --with-hdf5 --with-netcdf --with-mpi CC=mpicc CXX=mpicxx FC= F77= QTDIR=/opt/qt ## --------- ## ## Platform. ## ## --------- ## hostname = kunyang uname -m = x86_64 uname -r = 2.6.32-ARCH uname -s = Linux uname -v = #1 SMP PREEMPT Tue Feb 23 19:43:46 CET 2010 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/opencascade/bin PATH: /bin PATH: /sbin PATH: /usr/bin PATH: /usr/sbin PATH: /home/jed/bin PATH: /usr/share/java/apache-ant/bin PATH: /opt/mpich2/bin PATH: /usr/bin/perlbin/site PATH: /usr/bin/perlbin/vendor PATH: /usr/bin/perlbin/core PATH: /opt/qt/bin PATH: /home/jed/usr/paraview/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:3253: checking build system type configure:3267: result: x86_64-unknown-linux-gnu configure:3287: checking host system type configure:3300: result: x86_64-unknown-linux-gnu configure:3320: checking target system type configure:3333: result: x86_64-unknown-linux-gnu configure:3376: checking for a BSD-compatible install configure:3444: result: /bin/install -c configure:3455: checking whether build environment is sane configure:3505: result: yes configure:3646: checking for a thread-safe mkdir -p configure:3685: result: /bin/mkdir -p configure:3698: checking for gawk configure:3714: found /bin/gawk configure:3725: result: gawk configure:3736: checking whether make sets $(MAKE) configure:3758: result: yes configure:3841: checking for sed configure:3857: found /bin/sed configure:3869: result: sed configure:3896: checking for style of include used by make configure:3924: result: GNU configure:4145: checking for C compiler version configure:4154: mpicc --version >&5 gcc (GCC) 4.4.3 Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4165: $? = 0 configure:4154: mpicc -v >&5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/usr --enable-shared --enable-languages=c,c++,fortran,objc,obj-c++,ada --enable-threads=posix --mandir=/usr/share/man --infodir=/usr/share/info --enable-__cxa_atexit --disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu --disable-libstdcxx-pch --with-tune=generic Thread model: posix gcc version 4.4.3 (GCC) configure:4165: $? = 0 configure:4154: mpicc -V >&5 gcc: '-V' option must have argument configure:4165: $? = 1 configure:4154: mpicc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:4165: $? = 1 configure:4185: checking whether the C compiler works configure:4207: mpicc conftest.c >&5 configure:4211: $? = 0 configure:4260: result: yes configure:4263: checking for C compiler default output file name configure:4265: result: a.out configure:4271: checking for suffix of executables configure:4278: mpicc -o conftest conftest.c >&5 configure:4282: $? = 0 configure:4304: result: configure:4326: checking whether we are cross compiling configure:4334: mpicc -o conftest conftest.c >&5 configure:4338: $? = 0 configure:4345: ./conftest configure:4349: $? = 0 configure:4364: result: no configure:4369: checking for suffix of object files configure:4391: mpicc -c conftest.c >&5 configure:4395: $? = 0 configure:4416: result: o configure:4420: checking whether we are using the GNU C compiler configure:4439: mpicc -c conftest.c >&5 configure:4439: $? = 0 configure:4448: result: yes configure:4457: checking whether mpicc accepts -g configure:4477: mpicc -c -g conftest.c >&5 configure:4477: $? = 0 configure:4518: result: yes configure:4535: checking for mpicc option to accept ISO C89 configure:4599: mpicc -c -g -O2 conftest.c >&5 configure:4599: $? = 0 configure:4612: result: none needed configure:4634: checking dependency style of mpicc configure:4744: result: gcc3 configure:4765: checking how to run the C preprocessor configure:4796: mpicc -E conftest.c configure:4796: $? = 0 configure:4810: mpicc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:4810: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | /* end confdefs.h. */ | #include configure:4835: result: mpicc -E configure:4855: mpicc -E conftest.c configure:4855: $? = 0 configure:4869: mpicc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:4869: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | /* end confdefs.h. */ | #include configure:5010: checking for C++ compiler version configure:5019: mpicxx --version >&5 g++ (GCC) 4.4.3 Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:5030: $? = 0 configure:5019: mpicxx -v >&5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/usr --enable-shared --enable-languages=c,c++,fortran,objc,obj-c++,ada --enable-threads=posix --mandir=/usr/share/man --infodir=/usr/share/info --enable-__cxa_atexit --disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu --disable-libstdcxx-pch --with-tune=generic Thread model: posix gcc version 4.4.3 (GCC) configure:5030: $? = 0 configure:5019: mpicxx -V >&5 g++: '-V' option must have argument configure:5030: $? = 1 configure:5019: mpicxx -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:5030: $? = 1 configure:5034: checking whether we are using the GNU C++ compiler configure:5053: mpicxx -c conftest.cpp >&5 configure:5053: $? = 0 configure:5062: result: yes configure:5071: checking whether mpicxx accepts -g configure:5091: mpicxx -c -g conftest.cpp >&5 configure:5091: $? = 0 configure:5132: result: yes configure:5157: checking dependency style of mpicxx configure:5267: result: gcc3 configure:5287: checking how to run the C++ preprocessor configure:5314: mpicxx -E conftest.cpp configure:5314: $? = 0 configure:5328: mpicxx -E conftest.cpp conftest.cpp:11:28: error: ac_nonexistent.h: No such file or directory configure:5328: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | /* end confdefs.h. */ | #include configure:5353: result: mpicxx -E configure:5373: mpicxx -E conftest.cpp configure:5373: $? = 0 configure:5387: mpicxx -E conftest.cpp conftest.cpp:11:28: error: ac_nonexistent.h: No such file or directory configure:5387: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | /* end confdefs.h. */ | #include configure:5470: checking for mpif90 configure:5486: found /usr/bin/mpif90 configure:5497: result: mpif90 configure:5523: checking for Fortran compiler version configure:5532: mpif90 --version >&5 GNU Fortran (GCC) 4.4.3 Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:5543: $? = 0 configure:5532: mpif90 -v >&5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/usr --enable-shared --enable-languages=c,c++,fortran,objc,obj-c++,ada --enable-threads=posix --mandir=/usr/share/man --infodir=/usr/share/info --enable-__cxa_atexit --disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu --disable-libstdcxx-pch --with-tune=generic Thread model: posix gcc version 4.4.3 (GCC) configure:5543: $? = 0 configure:5532: mpif90 -V >&5 gfortran: '-V' option must have argument configure:5543: $? = 1 configure:5532: mpif90 -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:5543: $? = 1 configure:5552: checking whether we are using the GNU Fortran compiler configure:5565: mpif90 -c conftest.F >&5 configure:5565: $? = 0 configure:5574: result: yes configure:5580: checking whether mpif90 accepts -g configure:5591: mpif90 -c -g conftest.f >&5 configure:5591: $? = 0 configure:5599: result: yes configure:5676: checking for mpif77 configure:5692: found /usr/bin/mpif77 configure:5703: result: mpif77 configure:5729: checking for Fortran 77 compiler version configure:5738: mpif77 --version >&5 GNU Fortran (GCC) 4.4.3 Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:5749: $? = 0 configure:5738: mpif77 -v >&5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/usr --enable-shared --enable-languages=c,c++,fortran,objc,obj-c++,ada --enable-threads=posix --mandir=/usr/share/man --infodir=/usr/share/info --enable-__cxa_atexit --disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu --disable-libstdcxx-pch --with-tune=generic Thread model: posix gcc version 4.4.3 (GCC) configure:5749: $? = 0 configure:5738: mpif77 -V >&5 gfortran: '-V' option must have argument configure:5749: $? = 1 configure:5738: mpif77 -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:5749: $? = 1 configure:5758: checking whether we are using the GNU Fortran 77 compiler configure:5771: mpif77 -c conftest.F >&5 configure:5771: $? = 0 configure:5780: result: yes configure:5786: checking whether mpif77 accepts -g configure:5797: mpif77 -c -g conftest.f >&5 configure:5797: $? = 0 configure:5805: result: yes configure:5847: checking whether ln -s works configure:5851: result: yes configure:5858: checking whether make sets $(MAKE) configure:5880: result: yes configure:5945: checking for a sed that does not truncate output configure:6009: result: sed configure:6027: checking for grep that handles long lines and -e configure:6085: result: /bin/grep configure:6090: checking for egrep configure:6152: result: /bin/grep -E configure:6157: checking for fgrep configure:6219: result: /bin/grep -F configure:6254: checking for ld used by mpicc configure:6321: result: /usr/bin/ld configure:6328: checking if the linker (/usr/bin/ld) is GNU ld configure:6343: result: yes configure:6355: checking for BSD- or MS-compatible name lister (nm) configure:6404: result: /usr/bin/nm -B configure:6522: checking the name lister (/usr/bin/nm -B) interface configure:6529: mpicc -c -g -O2 conftest.c >&5 configure:6532: /usr/bin/nm -B "conftest.o" configure:6535: output 0000000000000000 B some_variable configure:6542: result: BSD nm configure:6546: checking the maximum length of command line arguments configure:6666: result: 1572864 configure:6683: checking whether the shell understands some XSI constructs configure:6693: result: yes configure:6697: checking whether the shell understands "+=" configure:6703: result: yes configure:6738: checking for /usr/bin/ld option to reload object files configure:6745: result: -r configure:6814: checking for objdump configure:6830: found /usr/bin/objdump configure:6841: result: objdump configure:6873: checking how to recognize dependent libraries configure:7069: result: pass_all configure:7129: checking for ar configure:7145: found /usr/bin/ar configure:7156: result: ar configure:7234: checking for strip configure:7250: found /usr/bin/strip configure:7261: result: strip configure:7333: checking for ranlib configure:7349: found /usr/bin/ranlib configure:7360: result: ranlib configure:7450: checking command to parse /usr/bin/nm -B output from mpicc object configure:7568: mpicc -c -g -O2 conftest.c >&5 configure:7571: $? = 0 configure:7575: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:7578: $? = 0 configure:7632: mpicc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:7635: $? = 0 configure:7673: result: ok configure:7769: mpicc -c -g -O2 conftest.c >&5 configure:7772: $? = 0 configure:8478: checking for ANSI C header files configure:8498: mpicc -c -g -O2 conftest.c >&5 configure:8498: $? = 0 configure:8571: mpicc -o conftest -g -O2 conftest.c -lm >&5 configure:8571: $? = 0 configure:8571: ./conftest configure:8571: $? = 0 configure:8582: result: yes configure:8595: checking for sys/types.h configure:8595: mpicc -c -g -O2 conftest.c >&5 configure:8595: $? = 0 configure:8595: result: yes configure:8595: checking for sys/stat.h configure:8595: mpicc -c -g -O2 conftest.c >&5 configure:8595: $? = 0 configure:8595: result: yes configure:8595: checking for stdlib.h configure:8595: mpicc -c -g -O2 conftest.c >&5 configure:8595: $? = 0 configure:8595: result: yes configure:8595: checking for string.h configure:8595: mpicc -c -g -O2 conftest.c >&5 configure:8595: $? = 0 configure:8595: result: yes configure:8595: checking for memory.h configure:8595: mpicc -c -g -O2 conftest.c >&5 configure:8595: $? = 0 configure:8595: result: yes configure:8595: checking for strings.h configure:8595: mpicc -c -g -O2 conftest.c >&5 configure:8595: $? = 0 configure:8595: result: yes configure:8595: checking for inttypes.h configure:8595: mpicc -c -g -O2 conftest.c >&5 configure:8595: $? = 0 configure:8595: result: yes configure:8595: checking for stdint.h configure:8595: mpicc -c -g -O2 conftest.c >&5 configure:8595: $? = 0 configure:8595: result: yes configure:8595: checking for unistd.h configure:8595: mpicc -c -g -O2 conftest.c >&5 configure:8595: $? = 0 configure:8595: result: yes configure:8610: checking for dlfcn.h configure:8610: mpicc -c -g -O2 conftest.c >&5 configure:8610: $? = 0 configure:8610: result: yes configure:8735: checking for C++ compiler version configure:8744: mpicxx --version >&5 g++ (GCC) 4.4.3 Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:8755: $? = 0 configure:8744: mpicxx -v >&5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/usr --enable-shared --enable-languages=c,c++,fortran,objc,obj-c++,ada --enable-threads=posix --mandir=/usr/share/man --infodir=/usr/share/info --enable-__cxa_atexit --disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu --disable-libstdcxx-pch --with-tune=generic Thread model: posix gcc version 4.4.3 (GCC) configure:8755: $? = 0 configure:8744: mpicxx -V >&5 g++: '-V' option must have argument configure:8755: $? = 1 configure:8744: mpicxx -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:8755: $? = 1 configure:8759: checking whether we are using the GNU C++ compiler configure:8787: result: yes configure:8796: checking whether mpicxx accepts -g configure:8857: result: yes configure:8882: checking dependency style of mpicxx configure:8992: result: gcc3 configure:9015: checking how to run the C++ preprocessor configure:9081: result: mpicxx -E configure:9101: mpicxx -E conftest.cpp configure:9101: $? = 0 configure:9115: mpicxx -E conftest.cpp conftest.cpp:22:28: error: ac_nonexistent.h: No such file or directory configure:9115: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:9256: checking for Fortran 77 compiler version configure:9265: mpif77 --version >&5 GNU Fortran (GCC) 4.4.3 Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:9276: $? = 0 configure:9265: mpif77 -v >&5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/usr --enable-shared --enable-languages=c,c++,fortran,objc,obj-c++,ada --enable-threads=posix --mandir=/usr/share/man --infodir=/usr/share/info --enable-__cxa_atexit --disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu --disable-libstdcxx-pch --with-tune=generic Thread model: posix gcc version 4.4.3 (GCC) configure:9276: $? = 0 configure:9265: mpif77 -V >&5 gfortran: '-V' option must have argument configure:9276: $? = 1 configure:9265: mpif77 -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:9276: $? = 1 configure:9285: checking whether we are using the GNU Fortran 77 compiler configure:9307: result: yes configure:9313: checking whether mpif77 accepts -g configure:9332: result: yes configure:9475: checking for Fortran compiler version configure:9484: mpif90 --version >&5 GNU Fortran (GCC) 4.4.3 Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:9495: $? = 0 configure:9484: mpif90 -v >&5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/usr --enable-shared --enable-languages=c,c++,fortran,objc,obj-c++,ada --enable-threads=posix --mandir=/usr/share/man --infodir=/usr/share/info --enable-__cxa_atexit --disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu --disable-libstdcxx-pch --with-tune=generic Thread model: posix gcc version 4.4.3 (GCC) configure:9495: $? = 0 configure:9484: mpif90 -V >&5 gfortran: '-V' option must have argument configure:9495: $? = 1 configure:9484: mpif90 -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:9495: $? = 1 configure:9504: checking whether we are using the GNU Fortran compiler configure:9526: result: yes configure:9532: checking whether mpif90 accepts -g configure:9551: result: yes configure:9724: checking for objdir configure:9739: result: .libs configure:10035: checking if mpicc supports -fno-rtti -fno-exceptions configure:10053: mpicc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:10057: $? = 0 configure:10070: result: no configure:10090: checking for mpicc option to produce PIC configure:10362: result: -fPIC -DPIC configure:10374: checking if mpicc PIC flag -fPIC -DPIC works configure:10392: mpicc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:10396: $? = 0 configure:10409: result: yes configure:10433: checking if mpicc static flag -static works configure:10461: result: yes configure:10476: checking if mpicc supports -c -o file.o configure:10497: mpicc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:10501: $? = 0 configure:10523: result: yes configure:10531: checking if mpicc supports -c -o file.o configure:10578: result: yes configure:10611: checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:11597: result: yes configure:11634: checking whether -lc should be explicitly linked in configure:11639: mpicc -c -g -O2 conftest.c >&5 configure:11642: $? = 0 configure:11657: mpicc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:11660: $? = 0 configure:11672: result: no configure:11836: checking dynamic linker characteristics configure:12269: mpicc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c -lm >&5 configure:12269: $? = 0 configure:12487: result: GNU/Linux ld.so configure:12589: checking how to hardcode library paths into programs configure:12614: result: immediate configure:13134: checking whether stripping libraries is possible configure:13139: result: yes configure:13174: checking if libtool supports shared libraries configure:13176: result: yes configure:13179: checking whether to build shared libraries configure:13200: result: yes configure:13203: checking whether to build static libraries configure:13207: result: yes configure:13357: checking for ld used by mpicxx configure:13424: result: /usr/bin/ld -m elf_x86_64 configure:13431: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:13446: result: yes configure:13501: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14414: result: yes configure:14442: mpicxx -c -g -O2 conftest.cpp >&5 configure:14445: $? = 0 configure:14627: checking for mpicxx option to produce PIC configure:14944: result: -fPIC -DPIC configure:14953: checking if mpicxx PIC flag -fPIC -DPIC works configure:14971: mpicxx -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:14975: $? = 0 configure:14988: result: yes configure:15009: checking if mpicxx static flag -static works configure:15037: result: yes configure:15049: checking if mpicxx supports -c -o file.o configure:15070: mpicxx -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:15074: $? = 0 configure:15096: result: yes configure:15101: checking if mpicxx supports -c -o file.o configure:15148: result: yes configure:15178: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:15204: result: yes configure:15341: checking dynamic linker characteristics configure:15722: mpicxx -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.cpp -lm >&5 configure:15722: $? = 0 configure:15940: result: GNU/Linux ld.so configure:15991: checking how to hardcode library paths into programs configure:16016: result: immediate configure:16157: checking if libtool supports shared libraries configure:16159: result: yes configure:16162: checking whether to build shared libraries configure:16182: result: yes configure:16185: checking whether to build static libraries configure:16189: result: yes configure:16203: checking for mpif77 option to produce PIC configure:16475: result: -fPIC configure:16484: checking if mpif77 PIC flag -fPIC works configure:16502: mpif77 -c -g -O2 -fPIC conftest.f >&5 configure:16506: $? = 0 configure:16519: result: yes configure:16540: checking if mpif77 static flag -static works configure:16568: result: yes configure:16580: checking if mpif77 supports -c -o file.o configure:16601: mpif77 -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:16605: $? = 0 configure:16627: result: yes configure:16632: checking if mpif77 supports -c -o file.o configure:16679: result: yes configure:16709: checking whether the mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:17682: result: yes configure:17819: checking dynamic linker characteristics configure:18194: mpif77 -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.f -lm >&5 configure:18194: $? = 0 configure:18412: result: GNU/Linux ld.so configure:18463: checking how to hardcode library paths into programs configure:18488: result: immediate configure:18624: checking if libtool supports shared libraries configure:18626: result: yes configure:18629: checking whether to build shared libraries configure:18649: result: yes configure:18652: checking whether to build static libraries configure:18656: result: yes configure:18682: mpif90 -c -g -O2 conftest.f >&5 configure:18685: $? = 0 configure:18795: checking for mpif90 option to produce PIC configure:19067: result: -fPIC configure:19076: checking if mpif90 PIC flag -fPIC works configure:19094: mpif90 -c -g -O2 -fPIC conftest.f >&5 configure:19098: $? = 0 configure:19111: result: yes configure:19132: checking if mpif90 static flag -static works configure:19160: result: yes configure:19172: checking if mpif90 supports -c -o file.o configure:19193: mpif90 -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:19197: $? = 0 configure:19219: result: yes configure:19224: checking if mpif90 supports -c -o file.o configure:19271: result: yes configure:19301: checking whether the mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:20274: result: yes configure:20411: checking dynamic linker characteristics configure:20786: mpif90 -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.f -lm >&5 configure:20786: $? = 0 configure:21004: result: GNU/Linux ld.so configure:21055: checking how to hardcode library paths into programs configure:21080: result: immediate configure:21141: checking for known C compilers configure:21162: mpicc -c -g -O2 conftest.c >&5 conftest.c:25: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me' configure:21162: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | #ifndef __INTEL_COMPILER | choke me | #endif | int | main () | { | | ; | return 0; | } configure:21534: result: GNU configure:21542: checking for known compiler/OS combinations configure:21608: result: GNU:x86_64 configure:21622: checking for known c++ compilers configure:21643: mpicxx -c -g -O2 conftest.cpp >&5 conftest.cpp:25: error: 'choke' does not name a type configure:21643: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | #ifndef __INTEL_COMPILER | choke me | #endif | int | main () | { | | ; | return 0; | } configure:21996: result: GNU configure:22004: checking for known compiler/OS combinations configure:22071: result: GNU:x86_64 configure:22187: checking for gunzip configure:22203: found /bin/gunzip configure:22214: result: gunzip -c configure:22224: checking for gzip configure:22251: result: gunzip -c configure:22261: checking for zcat configure:22288: result: gunzip -c configure:22311: checking if C++ compiler supports template class specialization configure:22335: mpicxx -c -Wall -pipe -g conftest.cpp >&5 configure:22335: $? = 0 configure:22348: result: yes configure:22358: checking if C++ compiler supports template function specialization configure:22383: mpicxx -c -Wall -pipe -g conftest.cpp >&5 configure:22383: $? = 0 configure:22396: result: yes configure:22412: checking how to get verbose linking output from mpif90 configure:22422: mpif90 -c -g -O2 -g conftest.f >&5 configure:22422: $? = 0 configure:22440: mpif90 -o conftest -g -O2 -g -v conftest.f -lm Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/usr --enable-shared --enable-languages=c,c++,fortran,objc,obj-c++,ada --enable-threads=posix --mandir=/usr/share/man --infodir=/usr/share/info --enable-__cxa_atexit --disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu --disable-libstdcxx-pch --with-tune=generic Thread model: posix gcc version 4.4.3 (GCC) /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/f951 conftest.f -ffixed-form -I/usr/include -I/usr/lib/openmpi -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/finclude -o /tmp/ccZ4nrrl.s GNU Fortran (GCC) version 4.4.3 (x86_64-unknown-linux-gnu) compiled by GNU C version 4.4.3, GMP version 4.3.2, MPFR version 2.4.2. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -V -Qy -o /tmp/ccvH4kKZ.o /tmp/ccZ4nrrl.s GNU assembler version 2.20.0 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.20.0.20091101 /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/collect2 --eh-frame-hdr -m elf_x86_64 --hash-style=both -dynamic-linker /lib/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib/crt1.o /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/crtbegin.o -L/usr/lib/openmpi -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../.. /tmp/ccvH4kKZ.o -lgfortranbegin -lgfortran -lm -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl --export-dynamic -lnsl -lutil -lgfortran -lm -ldl -lgfortran -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/crtend.o /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib/crtn.o configure:22505: result: -v configure:22507: checking for Fortran libraries of mpif90 configure:22530: mpif90 -o conftest -g -O2 -g -v conftest.f -lm Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/usr --enable-shared --enable-languages=c,c++,fortran,objc,obj-c++,ada --enable-threads=posix --mandir=/usr/share/man --infodir=/usr/share/info --enable-__cxa_atexit --disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu --disable-libstdcxx-pch --with-tune=generic Thread model: posix gcc version 4.4.3 (GCC) /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/f951 conftest.f -ffixed-form -I/usr/include -I/usr/lib/openmpi -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/finclude -o /tmp/ccDT3SIG.s GNU Fortran (GCC) version 4.4.3 (x86_64-unknown-linux-gnu) compiled by GNU C version 4.4.3, GMP version 4.3.2, MPFR version 2.4.2. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -V -Qy -o /tmp/cclTeVKl.o /tmp/ccDT3SIG.s GNU assembler version 2.20.0 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.20.0.20091101 /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/collect2 --eh-frame-hdr -m elf_x86_64 --hash-style=both -dynamic-linker /lib/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib/crt1.o /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/crtbegin.o -L/usr/lib/openmpi -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../.. /tmp/cclTeVKl.o -lgfortranbegin -lgfortran -lm -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl --export-dynamic -lnsl -lutil -lgfortran -lm -ldl -lgfortran -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/crtend.o /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib/crtn.o configure:22704: result: -L/usr/lib/openmpi -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../.. -lgfortranbegin -lgfortran -lm -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -lpthread configure:22720: checking for dummy main to link with Fortran libraries configure:22754: mpicc -o conftest -Wall -pipe -g conftest.c -lm -L/usr/lib/openmpi -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../.. -lgfortranbegin -lgfortran -lm -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -lpthread >&5 configure:22754: $? = 0 configure:22799: result: none configure:22832: checking for Fortran name-mangling scheme configure:22845: mpif90 -c -g -O2 -g conftest.f >&5 configure:22845: $? = 0 configure:22886: mpicc -o conftest -Wall -pipe -g conftest.c cfortran_test.o -lm -L/usr/lib/openmpi -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../.. -lgfortranbegin -lgfortran -lm -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -lpthread >&5 /tmp/cc0y7xgY.o: In function `main': /home/jed/build/moab/bompi/conftest.c:42: undefined reference to `foobar' collect2: ld returned 1 exit status configure:22886: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:22886: mpicc -o conftest -Wall -pipe -g conftest.c cfortran_test.o -lm -L/usr/lib/openmpi -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../.. -lgfortranbegin -lgfortran -lm -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -lpthread >&5 configure:22886: $? = 0 configure:22944: mpicc -o conftest -Wall -pipe -g conftest.c cfortran_test.o -lm -L/usr/lib/openmpi -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../.. -lgfortranbegin -lgfortran -lm -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -lpthread >&5 configure:22944: $? = 0 configure:22986: result: lower case, underscore, no extra underscore configure:23078: checking for inttypes.h configure:23078: result: yes configure:23086: checking for stdint.h configure:23086: result: yes configure:23094: checking for sys/types.h configure:23094: result: yes configure:23102: checking stddef.h usability configure:23102: mpicc -c -Wall -pipe -g conftest.c >&5 configure:23102: $? = 0 configure:23102: result: yes configure:23102: checking stddef.h presence configure:23102: mpicc -E conftest.c configure:23102: $? = 0 configure:23102: result: yes configure:23102: checking for stddef.h configure:23102: result: yes configure:23110: checking for stdlib.h configure:23110: result: yes configure:23123: checking size of void * configure:23128: mpicc -o conftest -Wall -pipe -g conftest.c -lm >&5 configure:23128: $? = 0 configure:23128: ./conftest configure:23128: $? = 0 configure:23143: result: 8 configure:23188: checking for size_t configure:23188: mpicc -c -Wall -pipe -g conftest.c >&5 configure:23188: $? = 0 configure:23188: mpicc -c -Wall -pipe -g conftest.c >&5 conftest.c: In function 'main': conftest.c:75: error: expected expression before ')' token configure:23188: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:23188: result: yes configure:23234: checking for ptrdiff_t configure:23234: mpicc -c -Wall -pipe -g conftest.c >&5 configure:23234: $? = 0 configure:23234: mpicc -c -Wall -pipe -g conftest.c >&5 conftest.c: In function 'main': conftest.c:76: error: expected expression before ')' token configure:23234: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:23234: result: yes configure:23382: checking size of EntityHandle configure:23384: result: 8 configure:23399: checking if iMesh support is to be built configure:23401: result: yes configure:23417: checking if iGeom support is to be built configure:23419: result: no configure:23501: checking ieeefp.h usability configure:23501: mpicc -c -Wall -pipe -g conftest.c >&5 conftest.c:70:20: error: ieeefp.h: No such file or directory configure:23501: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:23501: result: no configure:23501: checking ieeefp.h presence configure:23501: mpicc -E conftest.c conftest.c:37:20: error: ieeefp.h: No such file or directory configure:23501: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | /* end confdefs.h. */ | #include configure:23501: result: no configure:23501: checking for ieeefp.h configure:23501: result: no configure:23508: checking valgrind/memcheck.h usability configure:23508: mpicc -c -Wall -pipe -g conftest.c >&5 configure:23508: $? = 0 configure:23508: result: yes configure:23508: checking valgrind/memcheck.h presence configure:23508: mpicc -E conftest.c configure:23508: $? = 0 configure:23508: result: yes configure:23508: checking for valgrind/memcheck.h configure:23508: result: yes configure:23522: checking for C++ unordered_map configure:23553: mpicxx -c -Wall -pipe -g -DVALGRIND conftest.cpp >&5 In file included from /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../include/c++/4.4.3/unordered_map:35, from conftest.cpp:37: /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../include/c++/4.4.3/c++0x_warning.h:31:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. conftest.cpp: In function 'int main()': conftest.cpp:49: error: 'unordered_map' is not a member of 'std' conftest.cpp:49: error: expected primary-expression before 'int' conftest.cpp:49: error: expected ';' before 'int' configure:23553: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | /* end confdefs.h. */ | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | std::unordered_map map | ; | return 0; | } configure:23577: mpicxx -c -Wall -pipe -g -DVALGRIND conftest.cpp >&5 configure:23577: $? = 0 configure:23614: result: std::tr1 configure:23638: checking mpi.h usability configure:23638: mpicc -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 configure:23638: $? = 0 configure:23638: result: yes configure:23638: checking mpi.h presence configure:23638: mpicc -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c configure:23638: $? = 0 configure:23638: result: yes configure:23638: checking for mpi.h configure:23638: result: yes configure:23653: checking If mpi.h conflicts with C headers in C++ configure:23681: mpicxx -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp configure:23681: $? = 0 configure:23682: result: no configure:24074: checking for mpiexec configure:24090: found /usr/bin/mpiexec configure:24101: result: mpiexec configure:24193: checking for deflate in -lz configure:24226: mpicc -o conftest -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c -lz -lm >&5 configure:24226: $? = 0 configure:24235: result: yes configure:24271: checking for SZ_Decompress in -lsz configure:24304: mpicc -o conftest -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c -lsz -lm >&5 /usr/bin/ld: cannot find -lsz collect2: ld returned 1 exit status configure:24304: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char SZ_Decompress (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return SZ_Decompress (); | ; | return 0; | } configure:24313: result: no configure:24349: checking if HDF5 support is enabled configure:24365: result: yes configure:24375: checking for gpfs_stat in -lgpfs configure:24408: mpicc -o conftest -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c -lgpfs -lm >&5 /usr/bin/ld: cannot find -lgpfs collect2: ld returned 1 exit status configure:24408: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char gpfs_stat (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return gpfs_stat (); | ; | return 0; | } configure:24417: result: no configure:24461: checking hdf5.h usability configure:24461: mpicc -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 configure:24461: $? = 0 configure:24461: result: yes configure:24461: checking hdf5.h presence configure:24461: mpicc -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c configure:24461: $? = 0 configure:24461: result: yes configure:24461: checking for hdf5.h configure:24461: result: yes configure:24476: checking for H5Fopen in -lhdf5 configure:24509: mpicc -o conftest -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c -lhdf5 -lm >&5 configure:24509: $? = 0 configure:24519: result: yes configure:24748: checking for H5Pset_fapl_mpio in -lhdf5 configure:24782: mpicc -o conftest -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c -lhdf5 -lhdf5 -lm >&5 configure:24782: $? = 0 configure:24791: result: yes configure:24823: checking if CCMIO support is enabled configure:24840: result: yes configure:24875: checking ccmio.h usability configure:24875: mpicc -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 conftest.c:71:19: error: ccmio.h: No such file or directory configure:24875: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:24875: result: no configure:24875: checking ccmio.h presence configure:24875: mpicc -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c conftest.c:38:19: error: ccmio.h: No such file or directory configure:24875: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:24875: result: no configure:24875: checking for ccmio.h configure:24875: result: no configure:24882: WARNING: Ccmio header not found. configure:24890: checking ccmioutility.h usability configure:24890: mpicc -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 conftest.c:71:26: error: ccmioutility.h: No such file or directory configure:24890: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:24890: result: no configure:24890: checking ccmioutility.h presence configure:24890: mpicc -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c conftest.c:38:26: error: ccmioutility.h: No such file or directory configure:24890: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:24890: result: no configure:24890: checking for ccmioutility.h configure:24890: result: no configure:24897: WARNING: Ccmio header not found. configure:24905: checking ccmiocore.h usability configure:24905: mpicc -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 conftest.c:71:23: error: ccmiocore.h: No such file or directory configure:24905: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:24905: result: no configure:24905: checking ccmiocore.h presence configure:24905: mpicc -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c conftest.c:38:23: error: ccmiocore.h: No such file or directory configure:24905: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:24905: result: no configure:24905: checking for ccmiocore.h configure:24905: result: no configure:24912: WARNING: Ccmio header not found. configure:24925: WARNING: "Ccmio support disabled" configure:24961: checking if NetCDF support is enabled configure:24978: result: yes configure:24995: checking strstream.h usability configure:24995: mpicxx -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp >&5 conftest.cpp:71:23: error: strstream.h: No such file or directory configure:24995: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:24995: result: no configure:24995: checking strstream.h presence configure:24995: mpicxx -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp conftest.cpp:38:23: error: strstream.h: No such file or directory configure:24995: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:24995: result: no configure:24995: checking for strstream.h configure:24995: result: no configure:25000: checking sstream.h usability configure:25000: mpicxx -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp >&5 conftest.cpp:71:21: error: sstream.h: No such file or directory configure:25000: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:25000: result: no configure:25000: checking sstream.h presence configure:25000: mpicxx -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp conftest.cpp:38:21: error: sstream.h: No such file or directory configure:25000: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:25000: result: no configure:25000: checking for sstream.h configure:25000: result: no configure:25005: checking strstream usability configure:25005: mpicxx -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp >&5 In file included from /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../include/c++/4.4.3/backward/strstream:46, from conftest.cpp:71: /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../include/c++/4.4.3/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. configure:25005: $? = 0 configure:25005: result: yes configure:25005: checking strstream presence configure:25005: mpicxx -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp In file included from /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../include/c++/4.4.3/backward/strstream:46, from conftest.cpp:38: /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../include/c++/4.4.3/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. configure:25005: $? = 0 configure:25005: result: yes configure:25005: checking for strstream configure:25005: result: yes configure:25059: checking netcdf.h usability configure:25059: mpicc -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5 configure:25059: $? = 0 configure:25059: result: yes configure:25059: checking netcdf.h presence configure:25059: mpicc -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c configure:25059: $? = 0 configure:25059: result: yes configure:25059: checking for netcdf.h configure:25059: result: yes configure:25072: checking for netcdf.hh configure:25101: mpicxx -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp >&5 configure:25101: $? = 0 configure:25133: result: yes configure:25144: checking for netcdf_c++ library configure:25167: mpicxx -o conftest -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp -lm -lnetcdf_c++ -lnetcdf >&5 configure:25167: $? = 0 configure:25168: result: yes configure:25499: checking if mbconvert is to be built configure:25501: result: yes configure:25526: checking if hexmodops is to be built configure:25528: result: yes configure:25553: checking if mbchaco is to be built configure:25555: result: no configure:25580: checking if mbperf is to be built configure:25582: result: yes configure:25607: checking if qvdual is to be built configure:25609: result: no configure:25634: checking if mbsize is to be built configure:25636: result: yes configure:25661: checking if mbskin is to be built configure:25663: result: yes configure:25688: checking if mbtagprop is to be built configure:25690: result: yes configure:25715: checking if mcnpmit is to be built configure:25717: result: no configure:25742: checking if mbcoupler is to be built configure:25744: result: no configure:25769: checking if spheredecomp is to be built configure:25771: result: yes configure:25796: checking if mbsurfplot is to be built configure:25798: result: yes configure:25823: checking if mbzoltan is to be built configure:25825: result: yes configure:25850: checking if dagmc is to be built configure:25852: result: yes configure:25877: checking if gsets is to be built configure:25879: result: yes configure:25904: checking if mbdepth is to be built configure:25906: result: yes configure:25935: checking zoltan_cpp.h usability configure:25935: mpicxx -c -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DMPICH_IGNORE_CXX_SEEK conftest.cpp >&5 configure:25935: $? = 0 configure:25935: result: yes configure:25935: checking zoltan_cpp.h presence configure:25935: mpicxx -E -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DMPICH_IGNORE_CXX_SEEK conftest.cpp configure:25935: $? = 0 configure:25935: result: yes configure:25935: checking for zoltan_cpp.h configure:25935: result: yes configure:25976: checking for Zoltan_LB_Partition in -lzoltan configure:26009: mpicc -o conftest -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c -lzoltan -lm >&5 /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib/libzoltan.a(parmetis_interface.o): In function `Zoltan_ParMetis_Order': parmetis_interface.c:(.text+0xa26): undefined reference to `ParMETIS_V3_NodeND' parmetis_interface.c:(.text+0xabd): undefined reference to `METIS_NodeND' /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib/libzoltan.a(parmetis_interface.o): In function `Zoltan_ParMetis': parmetis_interface.c:(.text+0x153c): undefined reference to `ParMETIS_V3_PartKway' parmetis_interface.c:(.text+0x166a): undefined reference to `ParMETIS_V3_PartGeomKway' parmetis_interface.c:(.text+0x16fe): undefined reference to `ParMETIS_V3_PartGeom' parmetis_interface.c:(.text+0x1830): undefined reference to `ParMETIS_V3_AdaptiveRepart' parmetis_interface.c:(.text+0x1948): undefined reference to `ParMETIS_V3_RefineKway' parmetis_interface.c:(.text+0x1a1f): undefined reference to `ParMETIS_RepartLDiffusion' parmetis_interface.c:(.text+0x1af6): undefined reference to `ParMETIS_RepartGDiffusion' parmetis_interface.c:(.text+0x1bcd): undefined reference to `ParMETIS_RepartRemap' parmetis_interface.c:(.text+0x1ca4): undefined reference to `ParMETIS_RepartMLRemap' collect2: ld returned 1 exit status configure:26009: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "3.99" | #define PACKAGE_STRING "MOAB 3.99" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "3.99" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "3.99" | #define MB_VERSION_MAJOR 3 | #define MB_VERSION_MINOR 99 | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" | #define HAVE_HDF5_H 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char Zoltan_LB_Partition (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return Zoltan_LB_Partition (); | ; | return 0; | } configure:26018: result: no configure:26024: checking for Zoltan_LB_Partition in -lzoltan configure:26057: mpicc -o conftest -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c -lzoltan -lparmetis -lmetis -lm >&5 configure:26057: $? = 0 configure:26066: result: yes configure:29880: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by MOAB config.status 3.99, which was generated by GNU Autoconf 2.65. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on kunyang config.status:1391: creating Makefile config.status:1391: creating moab.make config.status:1391: creating src/Makefile config.status:1391: creating src/io/Makefile config.status:1391: creating src/io/mhdf/Makefile config.status:1391: creating src/parallel/Makefile config.status:1391: creating src/oldinc/Makefile config.status:1391: creating test/Makefile config.status:1391: creating test/h5file/Makefile config.status:1391: creating test/dual/Makefile config.status:1391: creating test/obb/Makefile config.status:1391: creating test/perf/Makefile config.status:1391: creating test/io/Makefile config.status:1391: creating test/parallel/Makefile config.status:1391: creating test/oldinc/Makefile config.status:1391: creating itaps/Makefile config.status:1391: creating itaps/imesh/Makefile config.status:1391: creating itaps/imesh/iMesh-Defs.inc config.status:1391: creating itaps/igeom/Makefile config.status:1391: creating itaps/igeom/iGeom-Defs.inc config.status:1391: creating tools/Makefile config.status:1391: creating tools/mbperf/Makefile config.status:1391: creating tools/mbchaco/Makefile config.status:1391: creating tools/mbcoupler/Makefile config.status:1391: creating tools/mbzoltan/Config.moab config.status:1391: creating tools/mbzoltan/Makefile config.status:1391: creating tools/mcnpmit/Makefile config.status:1391: creating tools/qvdual/Makefile config.status:1391: creating tools/dagmc/Makefile config.status:1391: creating doc/Makefile config.status:1391: creating doc/user.dox config.status:1391: creating config.h config.status:1556: config.h is unchanged config.status:1391: creating src/moab/Version.h config.status:1556: src/moab/Version.h is unchanged config.status:1391: creating src/moab/EntityHandle.hpp config.status:1556: src/moab/EntityHandle.hpp is unchanged config.status:1391: creating src/parallel/moab_mpi_config.h config.status:1556: src/parallel/moab_mpi_config.h is unchanged config.status:1391: creating src/FCDefs.h config.status:1556: src/FCDefs.h is unchanged config.status:1604: executing depfiles commands config.status:1604: executing libtool commands config.status:1604: executing src/MOAB_FCDefs.h commands configure:32857: result: C: mpicc -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map configure:32859: result: C++: mpicxx -Wall -pipe -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map configure:32862: result: Fortran: mpif90 -g -O2 -g ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=mpicc ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set=set ac_cv_env_CXX_value=mpicxx ac_cv_env_F77_set=set ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set=set ac_cv_env_FC_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPIEXEC_NP_set= ac_cv_env_MPIEXEC_NP_value= ac_cv_env_MPIEXEC_set= ac_cv_env_MPIEXEC_value= ac_cv_env_NP_set= ac_cv_env_NP_value= ac_cv_env_QTDIR_set=set ac_cv_env_QTDIR_value=/opt/qt ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_fc_compiler_gnu=yes ac_cv_fc_dummy_main=none ac_cv_fc_libs=' -L/usr/lib/openmpi -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../.. -lgfortranbegin -lgfortran -lm -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -lpthread' ac_cv_fc_mangling='lower case, underscore, no extra underscore' ac_cv_fortran_dummy_main=none ac_cv_header_ccmio_h=no ac_cv_header_ccmiocore_h=no ac_cv_header_ccmioutility_h=no ac_cv_header_dlfcn_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_ieeefp_h=no ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_mpi_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_sstream_h=no ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_strstream=yes ac_cv_header_strstream_h=no ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_valgrind_memcheck_h=yes ac_cv_header_zoltan_cpp_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_gpfs_gpfs_stat=no ac_cv_lib_hdf5_H5Pset_fapl_mpio=yes ac_cv_lib_hdf5___H5Fopen=yes ac_cv_lib_sz_SZ_Decompress=no ac_cv_lib_z_deflate=yes ac_cv_lib_zoltan_Zoltan_LB_Partition=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=sed ac_cv_path_install='/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='mpicc -E' ac_cv_prog_CXXCPP='mpicxx -E' ac_cv_prog_MPIEXEC=mpiexec ac_cv_prog_SED=sed ac_cv_prog_ZCAT='gunzip -c' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_F77=mpif77 ac_cv_prog_ac_ct_FC=mpif90 ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_fc_g=yes ac_cv_prog_fc_v=-v ac_cv_prog_make_make_set=yes ac_cv_sizeof_void_p=8 ac_cv_target=x86_64-unknown-linux-gnu ac_cv_type_ptrdiff_t=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_compiler_static_works_F77=yes lt_cv_prog_compiler_static_works_FC=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1572864 mk_cv_cxx_unordered_map=std::tr1 snl_cv_template_func_specialization=yes snl_cv_template_specialization=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/jed/build/moab/config/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /home/jed/build/moab/config/missing --run tar' AM_CFLAGS='' AM_CPPFLAGS=' -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE' AM_CXXFLAGS='' AM_LDFLAGS=' ' AR='ar' AUTOCONF='${SHELL} /home/jed/build/moab/config/missing --run autoconf' AUTOHEADER='${SHELL} /home/jed/build/moab/config/missing --run autoheader' AUTOMAKE='${SHELL} /home/jed/build/moab/config/missing --run automake-1.11' AWK='gawk' CC='mpicc' CCDEPMODE='depmode=gcc3' CCMIO_FILE_FALSE='' CCMIO_FILE_TRUE='#' CCMIO_LIBS='' CFLAGS=' -Wall -pipe -g' CGM_CPPFLAGS='' CGM_LDFLAGS='' CGM_LIBS='' CGM_LTFLAGS='' CHACO_INCLUDES='' CHACO_LIBS='' CPP='mpicc -E' CPPFLAGS=' -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map' CXX='mpicxx' CXXCPP='mpicxx -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS=' -Wall -pipe -g' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DISTCHECK_CONFIGURE_FLAGS=' --with-hdf5="yes" --with-netcdf="yes" --enable-mbconvert="yes" --enable-mbsize="yes" --enable-mbtagprop="yes" --enable-mbzoltan="yes"' DOXYGEN='' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_DOXYGEN_FALSE='' ENABLE_DOXYGEN_TRUE='#' ENABLE_dagmc_FALSE='#' ENABLE_dagmc_TRUE='' ENABLE_gsets_FALSE='#' ENABLE_gsets_TRUE='' ENABLE_hexmodops_FALSE='#' ENABLE_hexmodops_TRUE='' ENABLE_igeom_FALSE='' ENABLE_igeom_TRUE='#' ENABLE_imesh_FALSE='#' ENABLE_imesh_TRUE='' ENABLE_mbchaco_FALSE='' ENABLE_mbchaco_TRUE='#' ENABLE_mbconvert_FALSE='#' ENABLE_mbconvert_TRUE='' ENABLE_mbcoupler_FALSE='' ENABLE_mbcoupler_TRUE='#' ENABLE_mbdepth_FALSE='#' ENABLE_mbdepth_TRUE='' ENABLE_mbperf_FALSE='#' ENABLE_mbperf_TRUE='' ENABLE_mbsize_FALSE='#' ENABLE_mbsize_TRUE='' ENABLE_mbskin_FALSE='#' ENABLE_mbskin_TRUE='' ENABLE_mbsurfplot_FALSE='#' ENABLE_mbsurfplot_TRUE='' ENABLE_mbtagprop_FALSE='#' ENABLE_mbtagprop_TRUE='' ENABLE_mbzoltan_FALSE='#' ENABLE_mbzoltan_TRUE='' ENABLE_mcnpmit_FALSE='' ENABLE_mcnpmit_TRUE='#' ENABLE_qvdual_FALSE='' ENABLE_qvdual_TRUE='#' ENABLE_spheredecomp_FALSE='#' ENABLE_spheredecomp_TRUE='' EXEEXT='' EXPORT_LDFLAGS=' ' EXPORT_LTFLAGS='' F77='mpif77' FC='mpif90' FCFLAGS='-g -O2 -g' FCLIBS=' -L/usr/lib/openmpi -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../.. -lgfortranbegin -lgfortran -lm -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -lpthread' FFLAGS='-g -O2' FGREP='/bin/grep -F' GREP='/bin/grep' HAVE_CGM_FALSE='' HAVE_CGM_TRUE='#' HAVE_ZCAT_FALSE='' HAVE_ZCAT_TRUE='#' HDF5_FILE_FALSE='#' HDF5_FILE_TRUE='' HDF5_LIBS='-lhdf5 ' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS=' ' LIBOBJS='' LIBS='-lm' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /home/jed/build/moab/config/missing --run makeinfo' MKDIR_P='/bin/mkdir -p' MOAB_CGM_DEFINES='' MOAB_CXX_LIBS='-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s' MOAB_CXX_LINKFLAGS='-L/usr/lib/openmpi -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.3/../../..' MOC='' MPIEXEC='mpiexec' MPIEXEC_NP='-np' NETCDF_FILE_FALSE='#' NETCDF_FILE_TRUE='' NETCDF_LIBS='-lnetcdf_c++ -lnetcdf' NM='/usr/bin/nm -B' NMEDIT='' NP='2' OBJDUMP='objdump' OBJEXT='o' OLD_HEADERS_FALSE='#' OLD_HEADERS_TRUE='' OTOOL64='' OTOOL='' PACKAGE='moab' PACKAGE_BUGREPORT='' PACKAGE_NAME='MOAB' PACKAGE_STRING='MOAB 3.99' PACKAGE_TARNAME='moab' PACKAGE_URL='' PACKAGE_VERSION='3.99' PARALLEL_FALSE='#' PARALLEL_HDF5_FALSE='#' PARALLEL_HDF5_TRUE='' PARALLEL_TRUE='' PATH_SEPARATOR=':' QTDIR='/opt/qt' QVDUAL_INCLUDES='' QVDUAL_LIBS='' RANLIB='ranlib' SED='sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' UIC='' USE_MPIEXEC_FALSE='#' USE_MPIEXEC_TRUE='' USE_MPI_FALSE='#' USE_MPI_TRUE='' VERSION='3.99' VTK_LIB_DIR='' XMKMF='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' ZCAT='gunzip -c' ZOLTAN_INC_FLAGS='' ZOLTAN_LIBS='-lzoltan -lparmetis -lmetis' ZOLTAN_LIB_FLAGS='' ac_ct_CC='' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_F77='mpif77' ac_ct_FC='mpif90' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc=' -I$(srcdir)' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/jed/build/moab/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' lt_ECHO='echo' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/home/jed/usr' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-unknown-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='unknown' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "MOAB" #define PACKAGE_TARNAME "moab" #define PACKAGE_VERSION "3.99" #define PACKAGE_STRING "MOAB 3.99" #define PACKAGE_BUGREPORT "" #define PACKAGE_URL "" #define PACKAGE "moab" #define VERSION "3.99" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define FC_FUNC(name,NAME) name ## _ #define FC_FUNC_(name,NAME) name ## _ #define MOAB_HAVE_INTTYPES_H /**/ #define MOAB_HAVE_STDINT_H /**/ #define MOAB_HAVE_SYS_TYPES_H /**/ #define MOAB_HAVE_STDDEF_H /**/ #define MOAB_HAVE_STDLIB_H /**/ #define SIZEOF_VOID_P 8 #define MOAB_HAVE_SIZE_T /**/ #define MOAB_HAVE_PTRDIFF_T /**/ #define MB_VERSION "3.99" #define MB_VERSION_MAJOR 3 #define MB_VERSION_MINOR 99 #define MB_VERSION_STRING "MOAB 3.99 (Alpha)" #define HAVE_HDF5_H 1 #define HAVE_NETCDF_H 1 configure: exit 0