$ make check Making check in mhdf make[1]: Entering directory `/home/jed/build/moab/bompi/mhdf' make[1]: Nothing to be done for `check'. make[1]: Leaving directory `/home/jed/build/moab/bompi/mhdf' Making check in parallel make[1]: Entering directory `/home/jed/build/moab/bompi/parallel' make[2]: Entering directory `/home/jed/build/moab/bompi/parallel' make mbparallelcomm_test pcomm_unit parallel_unit_tests parallel_hdf5_test mhdf_parallel parallel_write_test make[3]: Entering directory `/home/jed/build/moab/bompi/parallel' make[3]: `mbparallelcomm_test' is up to date. make[3]: `pcomm_unit' is up to date. make[3]: `parallel_unit_tests' is up to date. make[3]: `parallel_hdf5_test' is up to date. make[3]: `mhdf_parallel' is up to date. make[3]: `parallel_write_test' is up to date. make[3]: Leaving directory `/home/jed/build/moab/bompi/parallel' make check-TESTS make[3]: Entering directory `/home/jed/build/moab/bompi/parallel' Running test_pack_vertices ... Running test_pack_elements ... Running test_pack_higher_order ... Running test_pack_poly ... Running test_pack_sets_simple ... Running test_pack_set_contents ... Running test_pack_sets_of_sets ... Running test_pack_set_parent_child ... Running test_pack_tag_data_sparse ... Running test_pack_tag_data_dense ... Running test_pack_tag_data_default_value ... Running test_pack_variable_length_tag ... Running test_pack_tag_handle_data ... Running test_pack_shared_entities_2d ... Running test_pack_shared_entities_3d ... Running test_pack_vertices ... Running test_pack_elements ... Running test_pack_higher_order ... Running test_pack_poly ... Running test_pack_sets_simple ... Running test_pack_set_contents ... Running test_pack_sets_of_sets ... Running test_pack_set_parent_child ... Running test_pack_tag_data_sparse ... Running test_pack_tag_data_dense ... Running test_pack_tag_data_default_value ... Running test_pack_variable_length_tag ... Running test_pack_tag_handle_data ... Running test_pack_shared_entities_2d ... Running test_pack_shared_entities_3d ... Running test_pack_shared_arbitrary ... HDF5-DIAG: Error detected in HDF5 (1.8.3) MPI-process 1: #000: ../../hdf5-1.8.3/src/H5F.c line 811 in H5Fis_hdf5(): unable to open file major: Low-level I/O minor: Unable to initialize object #001: ../../hdf5-1.8.3/src/H5FD.c line 1083 in H5FD_open(): open failed major: Virtual File Layer minor: Unable to initialize object #002: ../../hdf5-1.8.3/src/H5FDsec2.c line 362 in H5FD_sec2_open(): unable to open file major: File accessability minor: Unable to open file #003: ../../hdf5-1.8.3/src/H5FDsec2.c line 362 in H5FD_sec2_open(): No such file or directory major: Internal error (too specific to document in detail) minor: System error message MBErrorCode Test Failed: MB_SUCCESS == rval at line 1890 of '../../parallel/pcomm_unit.cpp' Expected value: Success (0) Actual value: Failure (14) test_pack_shared_arbitrary: FAILED Running test_filter_pstatus ... Running test_pack_shared_arbitrary ... HDF5-DIAG: Error detected in HDF5 (1.8.3) MPI-process 0: #000: ../../hdf5-1.8.3/src/H5F.c line 811 in H5Fis_hdf5(): unable to open file major: Low-level I/O minor: Unable to initialize object #001: ../../hdf5-1.8.3/src/H5FD.c line 1083 in H5FD_open(): open failed major: Virtual File Layer minor: Unable to initialize object #002: ../../hdf5-1.8.3/src/H5FDsec2.c line 362 in H5FD_sec2_open(): unable to open file major: File accessability minor: Unable to open file #003: ../../hdf5-1.8.3/src/H5FDsec2.c line 362 in H5FD_sec2_open(): No such file or directory major: Internal error (too specific to document in detail) minor: System error message MBErrorCode Test Failed: MB_SUCCESS == rval at line 1890 of '../../parallel/pcomm_unit.cpp' Expected value: Success (0) Actual value: Failure (14) test_pack_shared_arbitrary: FAILED Running test_filter_pstatus ... FAIL: pcomm_unit test_elements_on_several_procs : success test_ghost_elements_3_2_1 : success [brakk:17969] *** Process received signal *** [brakk:17969] Signal: Segmentation fault (11) [brakk:17969] Signal code: Address not mapped (1) [brakk:17969] Failing at address: 0x30111b0e8 [brakk:17969] [ 0] /lib/libpthread.so.0 [0x2b517342a790] [brakk:17969] [ 1] /lib/libc.so.6(memcpy+0x35) [0x2b51736b4335] [brakk:17969] [ 2] /home/jed/build/moab/bompi/.libs/libMOAB.so.0(_ZN14MBParallelComm15unpack_entitiesERPhbibRSt6vectorIS2_ImSaImEESaIS4_EES7_RS2_IS2_IiSaIiEESaIS9_EERS4_SD_RS2_IjSaIjEER7MBRange+0x2b8) [0x2b5170d81884] [brakk:17969] [ 3] /home/jed/build/moab/bompi/.libs/libMOAB.so.0(_ZN14MBParallelComm20exchange_ghost_cellsEiiibb+0x134b) [0x2b5170d97b6d] [brakk:17969] [ 4] /home/jed/build/moab/bompi/.libs/libMOAB.so.0(_ZN12ReadParallel9load_fileEPPKciRmiRSsRSt6vectorIiSaIiEEbS8_RK11FileOptionsS1_PKiiibiiiii+0x76b) [0x2b5170db75fb] [brakk:17969] [ 5] /home/jed/build/moab/bompi/.libs/libMOAB.so.0(_ZN12ReadParallel9load_fileEPPKciRmRK11FileOptionsS1_PKii+0x75b) [0x2b5170db6d93] [brakk:17969] [ 6] /home/jed/build/moab/bompi/parallel/.libs/lt-parallel_unit_tests(_ZN12ReadParallel9load_fileEPKcRmRK11FileOptionsS1_PKii+0x5d) [0x4218d3] [brakk:17969] [ 7] /home/jed/build/moab/bompi/.libs/libMOAB.so.0(_ZN6MBCore9load_fileEPKcRmS1_S1_PKii+0x133) [0x2b5170c5e8e3] [brakk:17969] [ 8] /home/jed/build/moab/bompi/parallel/.libs/lt-parallel_unit_tests(_Z19test_ghost_elementsPKciii+0x14f) [0x41900e] [brakk:17969] [ 9] /home/jed/build/moab/bompi/parallel/.libs/lt-parallel_unit_tests(_Z25test_ghost_elements_3_2_2PKc+0x27) [0x41ac0c] [brakk:17969] [10] /home/jed/build/moab/bompi/parallel/.libs/lt-parallel_unit_tests(_Z8run_testPF11MBErrorCodePKcES1_S1_+0x21) [0x414d50] [brakk:17969] [11] /home/jed/build/moab/bompi/parallel/.libs/lt-parallel_unit_tests(main+0x2d1) [0x4150b6] [brakk:17969] [12] /lib/libc.so.6(__libc_start_main+0xfd) [0x2b51736569ed] [brakk:17969] [13] /home/jed/build/moab/bompi/parallel/.libs/lt-parallel_unit_tests [0x414a99] [brakk:17969] *** End of error message *** -------------------------------------------------------------------------- mpiexec noticed that process rank 1 with PID 17969 on node brakk exited on signal 11 (Segmentation fault). -------------------------------------------------------------------------- FAIL: parallel_unit_tests Running test_write_elements ... Running test_write_elements ... 0: Vertex 2: shared with processor 1 (owned by this processor) 0: Vertex 3: shared with processor 1 (owned by this processor) 0: Vertex 5: shared with processor 1 (owned by this processor) 0: Vertex 8: shared with processor 1 (owned by this processor) 0: Vertex 10: shared with processor 1 (owned by this processor) 0: Vertex 13: shared with processor 1 (owned by this processor) 0: Curve 2: shared with processor 1 (owned by this processor) 0: Curve 8: shared with processor 1 (owned by this processor) 0: Curve 11: shared with processor 1 (owned by this processor) 0: Curve 12: shared with processor 1 (owned by this processor) 0: Curve 14: shared with processor 1 (owned by this processor) 0: Curve 20: shared with processor 1 (owned by this processor) 0: Curve 24: shared with processor 1 (owned by this processor) 0: Surface 5: shared with processor 1 (owned by this processor) 0: Surface 11: shared with processor 1 (owned by this processor) 1: Vertex 2: shared with processor 0 1: Vertex 3: shared with processor 0 1: Vertex 5: shared with processor 0 1: Vertex 8: shared with processor 0 1: Vertex 10: shared with processor 0 1: Vertex 13: shared with processor 0 1: Curve 2: ERROR: 2 of 3 entities owned by this processor 1: Curve 8: ERROR: 2 of 3 entities owned by this processor 1: Curve 11: ERROR: 2 of 3 entities owned by this processor 1: Curve 12: ERROR: 2 of 3 entities owned by this processor 1: Curve 14: ERROR: 2 of 3 entities owned by this processor 1: Curve 20: ERROR: 2 of 3 entities owned by this processor 1: Curve 24: ERROR: 2 of 3 entities owned by this processor 1: Surface 5: ERROR: 8 of 9 entities owned by this processor 1: Surface 11: ERROR: 8 of 9 entities owned by this processor Running test_write_shared_sets ... Equality Test Failed: r1.size() == r2.size() at line 325 of '../../parallel/parallel_hdf5_test.cc' Expected value: 168 Actual value: 146 test_write_elements: FAILED Running test_write_shared_sets ... Running test_var_length_parallel ... Running test_var_length_parallel ... FAIL: parallel_hdf5_test PASS: mhdf_parallel Using default interval count: 2 Using default interval count: 2 00: 0.00: Generating mesh 01: 0.01: Generating mesh 00: 0.00: Resolving shared entities 01: 0.01: Resolving shared entities 00: 0.00: Beginning parallel write 01: 0.01: Beginning parallel write 01: 0.02: Finalizing MPI 00: 0.01: Removing written file Wrote 16 hexes in 0.01 seconds. 00: 0.01: Finalizing MPI PASS: parallel_write_test =================== 3 of 5 tests failed =================== make[3]: *** [check-TESTS] Error 1 make[3]: Leaving directory `/home/jed/build/moab/bompi/parallel' make[2]: *** [check-am] Error 2 make[2]: Leaving directory `/home/jed/build/moab/bompi/parallel' make[1]: *** [check-recursive] Error 1 make[1]: Leaving directory `/home/jed/build/moab/bompi/parallel' make: *** [check-recursive] Error 1