[stittt@v0267] /tgac/software/testing/exm/0.8.0/src > ./exm-setup.zsh
RELEASE=/tgac/software/testing/exm/0.8.0/src
Located Swift/T source root at /tgac/software/testing/exm/0.8.0/src

Compile and install c-utils...
Located Swift/T source root at /tgac/software/testing/exm/0.8.0/src
c-utils version: 0.4.0
checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking how to run the C preprocessor... mpicc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdint.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for inline... inline
checking for pid_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for off_t... yes
checking for size_t... yes
checking for floor... yes
checking for gettimeofday... yes
checking for memchr... yes
checking for memmove... yes
checking for strchr... yes
checking for strdup... yes
checking for strnlen... yes
checking for strtol... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for cp that supports -u... yes
checking for ar... ar
checking for ranlib... ranlib
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/module.mk
config.status: creating tests/module.mk
config.status: creating src/c-utils.h
config.status: creating c-utils-config.h
config.status: c-utils-config.h is unchanged
  DEP		src/exm-string.d
  DEP		src/c-utils.d
  CC		src/c-utils.o
  CC		src/exm-string.o
  LINK		lib/libexmcutils.so
  AR		lib/libexmcutils.a

  INSTALL: /tgac/software/testing/exm/0.8.0/x86_64/c-utils
`source.txt' -> `/tgac/software/testing/exm/0.8.0/x86_64/c-utils/etc/source.txt'
`config.log' -> `/tgac/software/testing/exm/0.8.0/x86_64/c-utils/etc/config.log'
`install.txt' -> `/tgac/software/testing/exm/0.8.0/x86_64/c-utils/etc/install.txt'
`src/c-utils.h' -> `/tgac/software/testing/exm/0.8.0/x86_64/c-utils/include/c-utils.h'
`lib/libexmcutils.so' -> `/tgac/software/testing/exm/0.8.0/x86_64/c-utils/lib/libexmcutils.so'
`lib/libexmcutils.a' -> `/tgac/software/testing/exm/0.8.0/x86_64/c-utils/lib/libexmcutils.a'
`install.txt' -> `/tgac/software/testing/exm/0.8.0/x86_64/c-utils/install.txt'

Compile ADLB...
Located Swift/T source root at /tgac/software/testing/exm/0.8.0/src
ADLB/X version: 0.6.0
using CC=/tgac/software/testing/mpich/3.1.4/x86_64/bin/mpicc
PREFIX: /tgac/software/testing/exm/0.8.0/x86_64/lb
SOFTWARE: /tgac/software/testing/exm/0.8.0/x86_64
using CC=/tgac/software/testing/mpich/3.1.4/x86_64/bin/mpicc
checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking how to run the C preprocessor... mpicc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint32_t... yes
checking for off_t... yes
checking for pid_t... yes
checking for ssize_t... yes
checking for memchr... yes
checking for memmove... yes
checking for memset... yes
checking for pow... yes
checking for stpcpy... yes
checking for strdup... yes
checking for strtol... yes
checking for uname... yes
checking for strerror... yes
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for memory.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for inline... inline
checking for C/C++ restrict keyword... __restrict
checking for cp that supports -u... yes
using MPE: no
checking for /tgac/software/testing/exm/0.8.0/x86_64/c-utils/include/c-utils.h... yes
using ExM c-utils in /tgac/software/testing/exm/0.8.0/x86_64/c-utils ...
checking MPI version... The MPI version is 3
checkpoints enabled
checking for _LARGEFILE_SOURCE value needed for large files... no
checking if zlib is wanted... yes
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for ar... ar
checking for ranlib... ranlib
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/module.mk
config.status: creating src/adlb-version.h
config.status: creating tests/module.mk
config.status: creating config.h
config.status: config.h is unchanged
config.status: creating src/mpe-settings.h
config.status: src/mpe-settings.h is unchanged
  DEP		src/hostmap.d
  DEP		src/mpi-tools.d
  DEP		src/steal.d
  DEP		src/refcount.d
  DEP		src/engine.d
  DEP		src/notifications.d
  DEP		src/adlb_prof.d
  DEP		src/mpe-tools.d
  DEP		src/handlers.d
  DEP		src/xpt_file.d
  DEP		src/common.d
  DEP		src/requestqueue.d
  DEP		src/workqueue.d
  DEP		src/sync.d
  DEP		src/server.d
  DEP		src/backoffs.d
  DEP		src/xpt_index.d
  DEP		src/data.d
  DEP		src/data_structs.d
  DEP		src/messaging.d
  DEP		src/adlb.d
  DEP		src/data_cleanup.d
  DEP		src/multiset.d
  DEP		src/debug_symbols.d
  DEP		src/adlb-xpt.d
  DEP		src/adlb_types.d
  DEP		src/debug.d
  CC		src/adlb.o
  CC		src/engine.o
  LINK		lib/libadlb.so
  AR		lib/libadlb.a

  INSTALL	/tgac/software/testing/exm/0.8.0/x86_64/lb
`source.txt' -> `/tgac/software/testing/exm/0.8.0/x86_64/lb/etc/source.txt'
`config.log' -> `/tgac/software/testing/exm/0.8.0/x86_64/lb/etc/config.log'
`lib/libadlb.so' -> `/tgac/software/testing/exm/0.8.0/x86_64/lb/lib/libadlb.so'
`lib/libadlb.a' -> `/tgac/software/testing/exm/0.8.0/x86_64/lb/lib/libadlb.a'


Compile and install Turbine...
Located Swift/T source root at /tgac/software/testing/exm/0.8.0/src
Turbine version: 0.8.0
PREFIX: /tgac/software/testing/exm/0.8.0/x86_64/turbine
SOFTWARE: /tgac/software/testing/exm/0.8.0/x86_64
checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking for swig... /tgac/software/testing/bin/core/../..//swig/3.0.7/x86_64/bin/swig
checking how to run the C preprocessor... mpicc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking if zlib is wanted... yes
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for cp that supports -u... yes
checking for cp that supports --parents... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for inline... inline
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for pid_t... yes
checking for size_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for mode_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for ptrdiff_t... yes
checking vfork.h usability... no
checking vfork.h presence... no
checking for vfork.h... no
checking for fork... yes
checking for vfork... yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for gettimeofday... yes
checking for mallinfo... yes
checking for memchr... yes
checking for memset... yes
checking for pow... yes
checking for setenv... yes
checking for strchr... yes
checking for strdup... yes
checking for strerror... yes
checking for strlen... yes
checking for strnlen... yes
checking for strstr... yes
checking for strtol... yes
checking for strtoul... yes
checking for uname... yes
checking /tgac/software/testing/exm/0.8.0/x86_64/c-utils/include/c-utils.h... yes
checking for /tgac/software/testing/exm/0.8.0/x86_64/c-utils/lib/libexmcutils.a
PATH contains: /tgac/software/testing/mpich/3.1.4/x86_64/bin/mpicc
Trying MPI directory: /tgac/software/testing/mpich/3.1.4/x86_64
Found /tgac/software/testing/mpich/3.1.4/x86_64/bin/mpiexec
Using MPI launcher: /tgac/software/testing/mpich/3.1.4/x86_64/bin/mpiexec
checking for /tgac/software/testing/mpich/3.1.4/x86_64/include/mpi.h... yes
checking for MPI library libmpi at /tgac/software/testing/mpich/3.1.4/x86_64/lib... yes
checking MPI implementation in /tgac/software/testing/mpich/3.1.4/x86_64/include/mpi.h ... MPICH2
Checkpointing enabled
checking for /tgac/software/testing/exm/0.8.0/x86_64/lb/include/adlb.h... ok
Python enabled
R disabled
Julia disabled
Coaster integration disabled
checking for ar... ar
checking for ranlib... ranlib
configure: specified Tcl version 8.6
checking for Tcl library at /tgac/software/testing/tcl/8.6.4/x86_64//lib/libtcl8.6.so... exists!
using Tcl version: 8.6
Tcl shared library: /tgac/software/testing/tcl/8.6.4/x86_64//lib/libtcl8.6.so
Tcl static library:
checking for tclConfig.sh at /tgac/software/testing/tcl/8.6.4/x86_64//lib/tcl8.6... no
checking for tclConfig.sh at /tgac/software/testing/tcl/8.6.4/x86_64//lib... found
using tclConfig.sh in: /tgac/software/testing/tcl/8.6.4/x86_64//lib/
using Turbine Tcl executable: /tgac/software/testing/tcl/8.6.4/x86_64//bin/tclsh8.6
checking for Tcl system library directory with init.tcl... yes
Found init.tcl: /tgac/software/testing/tcl/8.6.4/x86_64/lib/tcl8.6/init.tcl
using Tcl system library directory: /tgac/software/testing/tcl/8.6.4/x86_64/lib
checking for a sed that does not truncate output... /bin/sed
checking for gawk... gawk
checking for h5cc... no
checking for h5pcc... no
checking for HDF5 libraries... no
configure: WARNING:
Unable to locate HDF5 compilation helper scripts 'h5cc' or 'h5pcc'.
Please specify --with-hdf5=<LOCATION> as the full path to h5cc or h5pcc.
HDF5 support is being disabled (equivalent to --with-hdf5=no).

HDF5 support: no
HDF5 is only required if you need Turbine's HDF features.

Preparing config files: please wait...
configure: creating ./config.status
config.status: creating src/turbine/turbine-version.h
config.status: creating src/turbine/module.mk
config.status: creating src/util/module.mk
config.status: creating src/util/debug-tokens.tcl
config.status: creating src/tcl/module.mk
config.status: creating src/tcl/adlb/module.mk
config.status: creating src/tcl/blob/module.mk
config.status: creating src/tcl/c-utils/module.mk
config.status: creating src/tcl/mpe/module.mk
config.status: creating src/tcl/julia/module.mk
config.status: creating src/tcl/python/module.mk
config.status: creating src/tcl/r/module.mk
config.status: creating src/tcl/static-pkg/module.mk
config.status: creating src/tcl/turbine/module.mk
config.status: creating src/executables/module.mk
config.status: creating lib/module.mk
config.status: creating scripts/main-wrap/module.mk
config.status: creating scripts/submit/module.mk
config.status: creating scripts/submit/cobalt/module.mk
config.status: creating scripts/submit/cray/module.mk
config.status: creating scripts/submit/ec2/module.mk
config.status: creating scripts/submit/pbs/module.mk
config.status: creating scripts/submit/slurm/module.mk
config.status: creating scripts/turbine-config.sh
config.status: creating scripts/turbine-build-config.sh
config.status: creating tests/module.mk
config.status: creating tests/runbin.zsh
config.status: creating Makefile
config.status: creating config.h
config.status: config.h is unchanged
  MKSTATIC_DEPS	src/executables/turbine_sh.manifest.d
  DEP		src/tcl/static-pkg/static-pkg.d
  MKSTATIC_DEPS	tests/staticapp-bundled-1.manifest.d
  MKSTATIC_DEPS	tests/staticapp-1.manifest.d
  TCL		src/util/debug.h
  MKSTATIC	src/executables/turbine_sh.c
  DEP		src/tcl/turbine/tcl-turbine.d
  DEP		src/tcl/julia/tcl-julia.d
  DEP		src/util/debug.d
  DEP		src/tcl/adlb/tcl-adlb.d
  DEP		src/turbine/executors/noop_executor.d
  DEP		src/turbine/worker.d
  DEP		src/turbine/cache.d
  DEP		src/turbine/async_exec.d
  DEP		src/turbine/turbine.d
  DEP		src/executables/turbine_sh.d
  CC		src/tcl/static-pkg/static-pkg.o
  CC		src/turbine/turbine.o
  CC		src/turbine/worker.o
  CC		src/turbine/cache.o
  CC		src/turbine/async_exec.o
  CC		src/turbine/executors/noop_executor.o
  CC		src/util/debug.o
  CC		src/tcl/julia/tcl-julia.o
  CC		src/tcl/adlb/tcl-adlb.o
  AR		lib/libtclturbinestatic.a
exm-setup.zsh: turbine: build FAILED