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Sorry- those are not supposed to be there. You can comment them
out of the Turbine source: <br>
<br>
lib/string.tcl:336: puts "cont: $container"<br>
lib/string.tcl:338: puts "Keys: $sorted_keys cont:
$container"<br>
<br>
then just 'make install' and try again. <br>
<br>
On 03/17/2015 10:07 AM, Timothy Stitt (TGAC) wrote:<br>
</div>
<blockquote cite="mid:D12DF3AA.121CF%25timothy.stitt@tgac.ac.uk"
type="cite">
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<div>Hi all,</div>
<div><br>
</div>
<div>I'm using the string_join() routine to concatenate the
elements of a string array. For some reason I'm getting
debug output (see example below) which I can't seem to
suppress (even with TURBINE_LOG=0). </div>
<div><br>
</div>
<div>…</div>
<div>cont: 5 --model 2 chunk.3 6 protein2genome 0
./exonerate_gcc 9 --percent 3 --target 1 --query 10 50.0 4
ecoli.fa 7 --score 8 50</div>
<div>Keys: 0 1 2 3 4 5 6 7 8 9 10 cont: 5 --model 2 chunk.3
6 protein2genome 0 ./exonerate_gcc 9 --percent 3 --target
1 --query 10 50.0 4 ecoli.fa 7 --score 8 50</div>
</div>
<div>…</div>
<div><br>
</div>
<div>Is there a quick fix to prevent this type of output being
sent to stdout?</div>
<div><br>
</div>
<div>Thanks,</div>
<div><br>
</div>
<div>Tim.</div>
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<p style="font-size: 12px; margin: 0px; font-family:
Verdana;">---</p>
<p style="margin: 0px; font-family: Verdana;"><span
style="font-size: 10px;"><b>Timothy Stitt PhD</b> / Head
of Scientific Computing</span></p>
<p style="margin: 0px; font-family: Verdana;"><span
style="font-size: 10px;">The Genome Analysis Centre
(TGAC)</span></p>
<p style="margin: 0px; font-family: Verdana; color: rgb(4,
46, 238);"><span style="text-decoration: underline;
font-size: 10px;"><a moz-do-not-send="true"
href="http://www.tgac.ac.uk/">http://www.tgac.ac.uk/</a></span></p>
<p style="margin: 0px; font-family: Cambria; min-height:
19px;"><span style="font-size: 10px;"><br>
</span></p>
<p style="margin: 0px; font-family: Verdana;"><span
style="font-size: 10px;">p: +44 1603 450378</span></p>
<p style="margin: 0px; font-family: Verdana; color: rgb(13,
102, 213);"><span style="color: rgb(0, 0, 0); font-size:
10px;">e: <a moz-do-not-send="true"
href="mailto:timothy.stitt@tgac.ac.uk">timothy.stitt@tgac.ac.uk</a></span></p>
</div>
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<br>
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</blockquote>
<br>
<br>
<pre class="moz-signature" cols="72">--
Justin M Wozniak</pre>
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