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<div class="moz-cite-prefix">Hi<br>
No, and I don't have access to any LSF systems. <br>
The way to get started is to check the information here:
<a class="moz-txt-link-freetext" href="http://swift-lang.org/Swift-T/turbine-sites.html#_turbine_as_mpi_program">http://swift-lang.org/Swift-T/turbine-sites.html#_turbine_as_mpi_program</a><br>
Turbine runs as an MPI program. <br>
Then, take a look at some other scheduler script that you have
used before. In PBS, the turbine-pbs-run.zsh script is in
control. It substitutes variables into a template named
turbine.pbs.m4, creating turbine.pbs, and qsubs that. In
turbine.pbs.m4, the key line is: <br>
<br>
${TURBINE_LAUNCHER} ${TCLSH} ${PROGRAM} ${ARGS}<br>
<br>
which will run as something like: <br>
<br>
mpiexec /path/to/tclsh myprogram.tic args...<br>
<br>
Everything else is just setting up environment variables, most of
which are optional. The key Turbine settings are set by this
command (line 54): <br>
<br>
source ${TURBINE_HOME}/scripts/turbine-config.sh<br>
<br>
You should be able to construct an ad hoc solution with those two
key lines. <br>
<br>
Alternatively, you could copy turbine/scripts/submit/pbs to
turbine/scripts/submit/lsf and edit the shell scripts until it
works. Then you could send us a patch! <br>
<br>
Justin<br>
<br>
On 03/16/2015 04:08 PM, Timothy Stitt (TGAC) wrote:<br>
</div>
<blockquote cite="mid:D12CF6CE.11F58%25timothy.stitt@tgac.ac.uk"
type="cite">
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<div>Hi all,</div>
<div><br>
</div>
<div>Has anyone developed a Turbine job launcher script for
the LSF batch system? If so, could you kindly pass on some
assistance on how to set it up with my local LSF cluster.</div>
<div><br>
</div>
<div>Thanks in advance,</div>
<div><br>
</div>
<div>Tim.</div>
<div>
<p style="font-size: 12px; margin: 0px; font-family:
Verdana;">---</p>
<p style="margin: 0px; font-family: Verdana;"><span
style="font-size: 10px;"><b>Timothy Stitt PhD</b> / Head
of Scientific Computing</span></p>
<p style="margin: 0px; font-family: Verdana;"><span
style="font-size: 10px;">The Genome Analysis Centre
(TGAC)</span></p>
<p style="margin: 0px; font-family: Verdana; color: rgb(4,
46, 238);"><span style="text-decoration: underline;
font-size: 10px;"><a moz-do-not-send="true"
href="http://www.tgac.ac.uk/">http://www.tgac.ac.uk/</a></span></p>
<p style="margin: 0px; font-family: Cambria; min-height:
19px;"><span style="font-size: 10px;"><br>
</span></p>
<p style="margin: 0px; font-family: Verdana;"><span
style="font-size: 10px;">p: +44 1603 450378</span></p>
<p style="margin: 0px; font-family: Verdana; color: rgb(13,
102, 213);"><span style="color: rgb(0, 0, 0); font-size:
10px;">e: <a moz-do-not-send="true"
href="mailto:timothy.stitt@tgac.ac.uk">timothy.stitt@tgac.ac.uk</a></span></p>
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<br>
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<br>
<pre class="moz-signature" cols="72">--
Justin M Wozniak</pre>
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