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<div class="moz-cite-prefix"><br>
I will paste this into the sites guide. Thanks! <br>
<br>
Our automated test suites will not run on systems like Raven. You
can launch the tests individually if desired. <br>
<br>
On 04/16/2013 04:20 AM, Scott Krieder wrote:<br>
</div>
<blockquote
cite="mid:CABp7gVxuocHDsou5Qw+oOhoVRYLDRNY5p+w_7roptL1CBzyF2g@mail.gmail.com"
type="cite">
<div dir="ltr">Hi All,
<div><br>
</div>
<div style="">I'm down to 1 error on the Turbine install on
Raven:</div>
<div style=""><span style="font-family:Arial">p01684@raven:~/exm/turbine/trunk/code>
make test_results</span><br>
</div>
<div style="">
<p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial">
SH<span class="" style="white-space:pre"> </span>tests/lib-turbine.result</font></p>
<p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial">make:
*** [tests/lib-turbine.result] Error 1</font></p>
<p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial">p01684@raven:~/exm/turbine/trunk/code>
cat tests/lib-turbine.out </font></p>
<p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial">mpiexec:
unexpected error - no non-PBS mpiexec in PATH</font></p>
<p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial"><br>
</font></p>
<p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial">Has
anyone seen this error on a Cray machine before?</font></p>
</div>
<div><br>
</div>
<div style="">Other than that error I have the Turbine stack
installed on Raven. I'm still working to install stc, which I
still need ant to install. Here are my notes:</div>
<div style=""><br>
</div>
<div style="">I used the Cray notes from here:</div>
<div style=""><a moz-do-not-send="true"
href="https://sites.google.com/site/exmproject/development/turbine---build">https://sites.google.com/site/exmproject/development/turbine---build</a><br>
</div>
<div style=""><br>
</div>
<div style="">On Raven use:</div>
<div style=""><span
style="font-family:arial,sans-serif;font-size:13px">/opt/cray/mpt/</span><span
style="font-family:arial,sans-serif;font-size:13px">default/gni/mpich2-gnu/46</span><br>
</div>
<div style=""><br>
</div>
<div style="">
<div style="font-family:arial,sans-serif;font-size:13px">For
ADLB:
<div>./configure --prefix=/home/users/p01684/Public/sfw/lb
CC=gcc
CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46/include
LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib
-lmpich"
--with-c-utils=/home/users/p01684/Public/sfw/c-utils
--enable-mpi-2<br>
</div>
<div><br>
</div>
<div>I modified the Makefile and swapped gcc for two
instances of mpicc.</div>
<div><br>
</div>
</div>
<div style="font-family:arial,sans-serif;font-size:13px">I
then installed SWIG from source with the configuration:</div>
<div style="font-family:arial,sans-serif;font-size:13px"><b
style="font-size:medium;font-family:Times;font-weight:normal">
<p dir="ltr"
style="line-height:1.15;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">./configure
--prefix=/home/users/p01684/Public/sfw/swig
--without-pcre</span></p>
</b></div>
<div style="font-family:arial,sans-serif;font-size:13px"><br>
</div>
<div style="font-family:arial,sans-serif;font-size:13px">I
configure turbine with:</div>
<div>
<p dir="ltr"
style="font-family:Times;font-size:medium;line-height:1.15;margin-bottom:0pt;margin-top:0pt"><span
style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">./configure
--prefix=/home/users/p01684/Public/sfw/turbine
--with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46</span></p>
<p style="margin-bottom:0pt;margin-top:0pt"><font
face="Arial"><br>
</font></p>
<p style="margin-bottom:0pt;margin-top:0pt"><font
face="Arial">-Scott</font></p>
</div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">
On Tue, Apr 16, 2013 at 5:43 AM, Michael Wilde <span
dir="ltr"><<a moz-do-not-send="true"
href="mailto:wilde@mcs.anl.gov" target="_blank"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=wilde@mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">wilde@mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">Scott,<br>
<br>
Were you able to get Swift/T running on Raven?<br>
<br>
If so, which version, and do you have an install there
that I can use for my own tests (and to help get a demo
ready and tested for Cray?)<br>
<br>
Tim, Justin, can you point me to a suggested Swift/T
toolset on Beagle?<br>
<br>
Thanks,<br>
<br>
- Mike<br>
<div class="">
<div class="h5"><br>
<br>
----- Original Message -----<br>
> From: "Scott Krieder" <<a
moz-do-not-send="true"
href="mailto:skrieder@iit.edu"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=skrieder@iit.edu&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">skrieder@iit.edu</a>><br>
> To: "Justin M Wozniak" <<a
moz-do-not-send="true"
href="mailto:wozniak@mcs.anl.gov"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=wozniak@mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">wozniak@mcs.anl.gov</a>><br>
> Cc: <a moz-do-not-send="true"
href="mailto:exm-user@lists.mcs.anl.gov"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=exm-user@lists.mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">exm-user@lists.mcs.anl.gov</a><br>
> Sent: Friday, April 12, 2013 3:02:04 PM<br>
> Subject: Re: [ExM Users] Installing Swift/T on
Raven<br>
><br>
><br>
><br>
> Hi Justin,<br>
><br>
><br>
><br>
> For ADLB it doesn't recognize --with-mpi or
--with-mpi-dir in the<br>
> configure file. So I pointed both flags to use
the default:<br>
> ./configure
--prefix=/home/users/p01684/Public/sfw/lb CC=gcc<br>
>
CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46/include<br>
>
LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib
-lmpich"<br>
>
--with-c-utils=/home/users/p01684/Public/sfw/c-utils<br>
><br>
><br>
><br>
> I modified the Makefile and swapped gcc for two
instances of mpicc.<br>
><br>
><br>
> I then installed SWIG from source with the
configuration:<br>
><br>
><br>
> ./configure
--prefix=/home/users/p01684/Public/sfw/swig<br>
> --without-pcre<br>
><br>
><br>
> I configure turbine with:<br>
><br>
><br>
> ./configure
--prefix=/home/users/p01684/Public/sfw/turbine<br>
>
--with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46<br>
><br>
><br>
> However on "make package" there is an error with
one of the blob<br>
> header files:<br>
> p01684@raven:~/exm/turbine/trunk/code> make
package SWIG<br>
> src/tcl/blob/SwiftBlob.i src/tcl/blob/blob.h:25:
Warning 201: Unable<br>
> to find 'stdbool.h'<br>
><br>
><br>
><br>
> Do you know if there is a module I can load so
swig can find the<br>
> stdbool.h?<br>
><br>
><br>
> Thank you,<br>
> Scott<br>
><br>
><br>
><br>
><br>
><br>
> On Fri, Apr 12, 2013 at 1:44 PM, Justin M Wozniak
<<br>
> <a moz-do-not-send="true"
href="mailto:wozniak@mcs.anl.gov"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=wozniak@mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">wozniak@mcs.anl.gov</a> > wrote:<br>
><br>
><br>
><br>
><br>
><br>
> That configure line points --prefix= ... /c-utils<br>
><br>
> Also, CFLAGS=-I... should point to an include
directory.<br>
><br>
> Try setting<br>
><br>
>
--with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46<br>
><br>
> and let me know what happens. I will try to get
on Raven soon to test<br>
> this.<br>
><br>
><br>
><br>
> On 04/12/2013 12:57 PM, Scott Krieder wrote:<br>
><br>
><br>
><br>
><br>
><br>
><br>
><br>
> Hi Justin,<br>
><br>
> This is from a tarball from my machine where
GeMTC and Swift are<br>
> working, I haven't updated past version 6770.
Sorry to bounce around<br>
> with errors but I believe I had an earlier issue
with the<br>
> c-utils/adlb install that lead to this turbine
issue. When<br>
> configuring adlb I point it at the c-utils
install and I get an<br>
> error regarding the MPI version.<br>
><br>
> I'm running:<br>
> ./configure
--prefix=/home/users/p01684/Public/c-utils CC=gcc<br>
>
--with-c-utils=/home/users/p01684/Public/sfw/c-utils<br>
> CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46<br>
>
LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib
-lmpich"<br>
><br>
> I noticed that there are many folders in:<br>
> /opt/cray/mpt/<br>
><br>
> Is there a good way to identify which version I
should use within<br>
> /opt/cray/mpt? Or am I wrong in assuming that
this versioning is<br>
> what is causing the "Could not preprocess
maint/mpi_version.cpp"<br>
> error?<br>
><br>
> Thanks,<br>
> Scott<br>
><br>
> ==error message==<br>
> checking for cp that supports -u... yes<br>
> using MPE: no<br>
> checking for<br>
>
/home/users/p01684/Public/sfw/c-utils/include/c-utils.h...
yes<br>
> using ExM c-utils in
/home/users/p01684/Public/sfw/c-utils ...<br>
> checking MPI version...
maint/mpi_version.cpp:23:17: error: mpi.h: No<br>
> such file or directory<br>
> configure: error: Could not preprocess
maint/mpi_version.cpp<br>
><br>
><br>
><br>
><br>
><br>
><br>
><br>
> On Fri, Apr 12, 2013 at 11:28 AM, Justin M
Wozniak <<br>
> <a moz-do-not-send="true"
href="mailto:wozniak@mcs.anl.gov"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=wozniak@mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">wozniak@mcs.anl.gov</a> > wrote:<br>
><br>
><br>
><br>
><br>
><br>
><br>
> Hi<br>
><br>
> Is this with trunk or with the release package?<br>
><br>
> --with-mpi-dir may have been replaced by
--with-mpi<br>
><br>
> Justin<br>
><br>
><br>
> On 04/12/2013 11:05 AM, Scott Krieder wrote:<br>
><br>
><br>
><br>
><br>
><br>
><br>
> Hi All,<br>
><br>
><br>
> I'm trying to install Swift/T on Raven. I
followed the notes about<br>
> Cray systems.<br>
><br>
><br>
> When I configure turbine with:<br>
> ./configure
--prefix=/home/users/p01684/Public/sfw/turbine<br>
> --enable-custom<br>
>
--with-mpi-dir=/opt/cray/mpt/default/xt/gemini/mpich2-gnu/46<br>
><br>
><br>
><br>
> I get a long error about "could not find
directory" in reference to<br>
> mpicc. Is there something I should do in addition
to the --with-mpi<br>
> flag?<br>
><br>
><br>
> Thanks,<br>
> Scott<br>
><br>
><br>
> ==Error Message==<br>
><br>
> checking for<br>
>
/ufs/home/users/p01684/Public/sfw/c-utils/include/c-utils.h...
yes<br>
> which: no mpicc in<br>
>
(/opt/pbs/10.4.0.101257/bin:/opt/cray/atp/1.6.2/bin:/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin:/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin:/opt/toolworks/totalview.8.11.0-1/bin:/opt/totalview-support/1.1.4/bin:/opt/cray/cce/8.1.4/cray-binutils/x86_64-unknown-linux-gnu/bin:/opt/cray/cce/8.1.4/craylibs/x86-64/bin:/opt/cray/cce/8.1.4/cftn/bin:/opt/cray/cce/8.1.4/CC/bin:/opt/cray/xt-asyncpe/5.20.11/bin:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin:/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin:/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin:/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin:/opt/cray/lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0401.6845.9.1-1.0401.38658.11.3/sbin:/opt/cray/lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0401.6845.9.1-1.0401.38658.11.3/bin:/opt/cray/MySQL/5.0.64-1.0000.5053.22.1/sbin:/opt/cray/MySQL/5.0.64-1.0000.5053.22.1/bin:/opt/cray/sdb/1.0-1.0401.38148.4.27.gem/bin:/opt/cray/nodestat/2.<br>
> 2-1.0401. 37252.2.1.gem /bin:/opt /modules/<br>
> <a moz-do-not-send="true"
href="http://3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin"
target="_blank">3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin</a><br>
> )<br>
><br>
><br>
> ./configure: line 4032: ((: ! : syntax error:
operand expected (error<br>
> token is " ")<br>
> checking for 0... no<br>
> configure: error: Could not find directory<br>
><br>
><br>
><br>
><br>
><br>
> --<br>
> Scott J. Krieder<br>
><br>
><br>
> C: <a moz-do-not-send="true"
href="tel:419-685-0410" value="+14196850410">419-685-0410</a><br>
><br>
> E: <a moz-do-not-send="true"
href="mailto:skrieder@iit.edu"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=skrieder@iit.edu&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">skrieder@iit.edu</a><br>
><br>
> <a moz-do-not-send="true"
href="http://datasys.cs.iit.edu/%7Eskrieder/"
target="_blank">http://datasys.cs.iit.edu/~skrieder/</a><br>
><br>
><br>
> _______________________________________________<br>
> ExM-user mailing list <a moz-do-not-send="true"
href="mailto:ExM-user@lists.mcs.anl.gov"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=ExM-user@lists.mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">ExM-user@lists.mcs.anl.gov</a><br>
> <a moz-do-not-send="true"
href="https://lists.mcs.anl.gov/mailman/listinfo/exm-user"
target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/exm-user</a><br>
><br>
> --<br>
> Justin M Wozniak<br>
><br>
> _______________________________________________<br>
> ExM-user mailing list<br>
> <a moz-do-not-send="true"
href="mailto:ExM-user@lists.mcs.anl.gov"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=ExM-user@lists.mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">ExM-user@lists.mcs.anl.gov</a><br>
> <a moz-do-not-send="true"
href="https://lists.mcs.anl.gov/mailman/listinfo/exm-user"
target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/exm-user</a><br>
><br>
><br>
><br>
><br>
><br>
><br>
> --<br>
> Scott J. Krieder<br>
><br>
><br>
> C: <a moz-do-not-send="true"
href="tel:419-685-0410" value="+14196850410">419-685-0410</a><br>
><br>
> E: <a moz-do-not-send="true"
href="mailto:skrieder@iit.edu"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=skrieder@iit.edu&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">skrieder@iit.edu</a><br>
><br>
> <a moz-do-not-send="true"
href="http://datasys.cs.iit.edu/%7Eskrieder/"
target="_blank">http://datasys.cs.iit.edu/~skrieder/</a><br>
><br>
> --<br>
> Justin M Wozniak<br>
><br>
><br>
><br>
> --<br>
> Scott J. Krieder<br>
><br>
><br>
> C: <a moz-do-not-send="true"
href="tel:419-685-0410" value="+14196850410">419-685-0410</a><br>
><br>
> E: <a moz-do-not-send="true"
href="mailto:skrieder@iit.edu"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=skrieder@iit.edu&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">skrieder@iit.edu</a><br>
><br>
> <a moz-do-not-send="true"
href="http://datasys.cs.iit.edu/%7Eskrieder/"
target="_blank">http://datasys.cs.iit.edu/~skrieder/</a><br>
> _______________________________________________<br>
> ExM-user mailing list<br>
> <a moz-do-not-send="true"
href="mailto:ExM-user@lists.mcs.anl.gov"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=ExM-user@lists.mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">ExM-user@lists.mcs.anl.gov</a><br>
> <a moz-do-not-send="true"
href="https://lists.mcs.anl.gov/mailman/listinfo/exm-user"
target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/exm-user</a><br>
><br>
</div>
</div>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<font face="Times" size="3">Scott J. Krieder<br>
</font>
<div>
<div><font face="Times" size="3">C: 419-685-0410<br>
</font>
<div><font face="Times" size="3">E: <a
moz-do-not-send="true"
href="mailto:skrieder@iit.edu" target="_blank"
onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=skrieder@iit.edu&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return
false;">skrieder@iit.edu</a><br>
</font>
<div><font face="Times" size="3"><a
moz-do-not-send="true"
href="http://datasys.cs.iit.edu/%7Eskrieder/"
target="_blank">http://datasys.cs.iit.edu/~skrieder/</a></font></div>
</div>
</div>
</div>
</div>
</div>
</blockquote>
<br>
<br>
<pre class="moz-signature" cols="72">--
Justin M Wozniak
</pre>
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