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<div class="moz-cite-prefix"><br>
I missed that note about blob.h . That is just a warning, as far
as I know it does not hurt anything. <br>
<br>
On 04/12/2013 03:02 PM, Scott Krieder wrote:<br>
</div>
<blockquote
cite="mid:CABp7gVwRJZGm2gSqb7rzd-_JskASSW74aPCqXfp_dkLpZJ32-w@mail.gmail.com"
type="cite">
<div dir="ltr">Hi Justin,
<div>
<div><br>
</div>
<div>For ADLB it doesn't recognize --with-mpi or
--with-mpi-dir in the configure file. So I pointed both
flags to use the default:
<div>./configure --prefix=/home/users/p01684/Public/sfw/lb
CC=gcc
CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46/include
LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib
-lmpich"
--with-c-utils=/home/users/p01684/Public/sfw/c-utils<br>
</div>
<div><br>
</div>
<div style="">I modified the Makefile and swapped gcc for
two instances of mpicc.</div>
<div><br>
</div>
</div>
<div style="">I then installed SWIG from source with the
configuration:</div>
<div style=""><b
id="internal-source-marker_0.44373832386918366"
style="color:rgb(0,0,0);font-family:Times;font-size:medium;font-weight:normal">
<p dir="ltr"
style="line-height:1.15;margin-top:0pt;margin-bottom:0pt">
<span
style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">./configure
--prefix=/home/users/p01684/Public/sfw/swig
--without-pcre</span></p>
</b></div>
<div style="">
<br>
</div>
<div style="">I configure turbine with:</div>
<div style=""><span
id="internal-source-marker_0.44373832386918366">
<p dir="ltr"
style="color:rgb(0,0,0);font-family:Times;font-size:medium;line-height:1.15;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">./configure
--prefix=/home/users/p01684/Public/sfw/turbine
--with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46</span></p>
<div
style="color:rgb(0,0,0);font-family:Times;font-size:medium"><span
style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br>
</span></div>
<div
style="color:rgb(0,0,0);font-family:Times;font-size:medium">
<span
style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">However
on "make package" there is an error with one of the
blob header files:</span></div>
<div><span
style="background-color:transparent;vertical-align:baseline"><font
color="#000000" face="Arial"><span
style="font-size:15px;white-space:pre-wrap">p01684@raven:~/exm/turbine/trunk/code>
make package SWIG src/tcl/blob/SwiftBlob.i
src/tcl/blob/blob.h:25: Warning 201: Unable to
find 'stdbool.h'</span></font><br>
</span></div>
<div><span
style="background-color:transparent;vertical-align:baseline"><font
color="#000000" face="Arial"><span
style="font-size:15px;white-space:pre-wrap"><br>
</span></font></span></div>
<div style=""><font color="#000000" face="Arial"><span
style="font-size:15px;white-space:pre-wrap">Do you
know if there is a module I can load so swig can
find the stdbool.h?</span></font></div>
<div style="">
<font color="#000000" face="Arial"><span
style="font-size:15px;white-space:pre-wrap"><br>
</span></font></div>
<div style=""><font color="#000000" face="Arial"><span
style="font-size:15px;white-space:pre-wrap">Thank
you,</span></font></div>
<div style=""><font color="#000000" face="Arial"><span
style="font-size:15px;white-space:pre-wrap">Scott</span></font></div>
<div
style="color:rgb(0,0,0);font-family:Times;font-size:medium;font-weight:bold"><span
style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br>
</span></div>
</span></div>
</div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">On Fri, Apr 12, 2013 at 1:44 PM, Justin
M Wozniak <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:wozniak@mcs.anl.gov" target="_blank">wozniak@mcs.anl.gov</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
<div><br>
That configure line points --prefix= ... /c-utils <br>
<br>
Also, CFLAGS=-I... should point to an include directory.
<br>
<br>
Try setting <br>
<br>
--with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46<br>
<br>
and let me know what happens. I will try to get on
Raven soon to test this. <br>
<div>
<div class="h5"> <br>
On 04/12/2013 12:57 PM, Scott Krieder wrote:<br>
</div>
</div>
</div>
<blockquote type="cite">
<div>
<div class="h5">
<div dir="ltr">
<div>
<div>Hi Justin,<br>
<br>
This is from a tarball from my machine where
GeMTC and Swift are working, I haven't updated
past version 6770. Sorry to bounce around with
errors but I believe I had an earlier issue
with the c-utils/adlb install that lead to
this turbine issue. When configuring adlb I
point it at the c-utils install and I get an
error regarding the MPI version.<br>
<br>
I'm running:<br>
./configure
--prefix=/home/users/p01684/Public/c-utils
CC=gcc
--with-c-utils=/home/users/p01684/Public/sfw/c-utils
CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46
LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib
-lmpich"<br>
<br>
I noticed that there are many folders in:<br>
/opt/cray/mpt/<br>
<br>
Is there a good way to identify which version
I should use within /opt/cray/mpt? Or am I
wrong in assuming that this versioning is what
is causing the "Could not preprocess
maint/mpi_version.cpp" error?</div>
<div><br>
Thanks,<br>
Scott<br>
<br>
==error message==<br>
checking for cp that supports -u... yes<br>
using MPE: no<br>
checking for
/home/users/p01684/Public/sfw/c-utils/include/c-utils.h...
yes</div>
<div>using ExM c-utils in
/home/users/p01684/Public/sfw/c-utils ...</div>
<div>checking MPI version...
maint/mpi_version.cpp:23:17: error: mpi.h: No
such file or directory</div>
<div>configure: error: Could not preprocess
maint/mpi_version.cpp</div>
<div><br>
</div>
</div>
</div>
</div>
</div>
<div class="gmail_extra"> <br>
<br>
<div class="gmail_quote">
<div>
<div class="h5">On Fri, Apr 12, 2013 at 11:28 AM,
Justin M Wozniak <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:wozniak@mcs.anl.gov"
target="_blank">wozniak@mcs.anl.gov</a>></span>
wrote:<br>
</div>
</div>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
<div>
<div class="h5">
<div>Hi<br>
<br>
Is this with trunk or with the release
package? <br>
<br>
--with-mpi-dir may have been replaced by
--with-mpi <br>
<br>
Justin
<div><br>
<br>
On 04/12/2013 11:05 AM, Scott Krieder
wrote:<br>
</div>
</div>
</div>
</div>
<blockquote type="cite">
<div dir="ltr">
<div>
<div class="h5">
<div>Hi All,
<div><br>
</div>
<div>I'm trying to install Swift/T on
Raven. I followed the notes about
Cray systems.</div>
<div><br>
</div>
<div>When I configure turbine with:</div>
<div>./configure
--prefix=/home/users/p01684/Public/sfw/turbine
--enable-custom
--with-mpi-dir=/opt/cray/mpt/default/xt/gemini/mpich2-gnu/46<br>
</div>
<div><br>
</div>
<div>I get a long error about "could
not find directory" in reference to
mpicc. Is there something I should
do in addition to the --with-mpi
flag?</div>
<div><br>
</div>
<div> Thanks,</div>
<div>Scott</div>
<div><br>
</div>
<div>==Error Message==</div>
</div>
</div>
</div>
<div>
<div>checking for
/ufs/home/users/p01684/Public/sfw/c-utils/include/c-utils.h...
yes</div>
<div>which: no mpicc in
(/opt/pbs/10.4.0.101257/bin:/opt/cray/atp/1.6.2/bin:/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin:/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin:/opt/toolworks/totalview.8.11.0-1/bin:/opt/totalview-support/1.1.4/bin:/opt/cray/cce/8.1.4/cray-binutils/x86_64-unknown-linux-gnu/bin:/opt/cray/cce/8.1.4/craylibs/x86-64/bin:/opt/cray/cce/8.1.4/cftn/bin:/opt/cray/cce/8.1.4/CC/bin:/opt/cray/xt-asyncpe/5.20.11/bin:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin:/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin:/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin:/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin:/opt/cray/lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0401.6845.9.1-1.0401.38658.11.3/sbin:/opt/cray/lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0401.6845.9.1-1.0401.38658.11.3/bin:/opt/cray/MySQL/5.0.64-1.0000.5053.22.1/sbin:/opt/cray/MySQL/5.0.64-1.0000.5053.22.1/bin:/opt/cray/sdb/1.0-1.0401.38148.4.27.gem/bin:/opt/cray/n
odestat/2
.
2-1.0401.
37252.2.1.gem /bin:/opt /modules/<a
moz-do-not-send="true"
href="http://3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin"
target="_blank">3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin</a>)</div>
<div class="im">
<div>
<div>./configure: line 4032: ((: ! :
syntax error: operand expected
(error token is " ")</div>
<div>checking for 0... no</div>
<div>configure: error: Could not find
directory</div>
</div>
</div>
</div>
<div class="im">
<div>
<div><br clear="all">
<div> <br>
</div>
-- <br>
<font face="Times" size="3">Scott J.
Krieder<br>
</font>
<div>
<div><font face="Times" size="3">C:
<a moz-do-not-send="true"
href="tel:419-685-0410"
value="+14196850410"
target="_blank">419-685-0410</a><br>
</font>
<div><font face="Times" size="3">E:
<a moz-do-not-send="true"
href="mailto:skrieder@iit.edu"
target="_blank">skrieder@iit.edu</a><br>
</font>
<div><font face="Times" size="3"><a
moz-do-not-send="true"
href="http://datasys.cs.iit.edu/%7Eskrieder/"
target="_blank">http://datasys.cs.iit.edu/~skrieder/</a></font></div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="im"> <br>
<fieldset></fieldset>
<br>
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</blockquote>
<span><font color="#888888"> <br>
<br>
<pre cols="72">--
Justin M Wozniak
</pre>
</font></span></div>
<div class="im"> <br>
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<div class="im"> <br>
<br clear="all">
<div><br>
</div>
-- <br>
<font face="Times" size="3">Scott J. Krieder<br>
</font>
<div>
<div><font face="Times" size="3">C: <a
moz-do-not-send="true"
href="tel:419-685-0410" value="+14196850410"
target="_blank">419-685-0410</a><br>
</font>
<div><font face="Times" size="3">E: <a
moz-do-not-send="true"
href="mailto:skrieder@iit.edu"
target="_blank">skrieder@iit.edu</a><br>
</font>
<div><font face="Times" size="3"><a
moz-do-not-send="true"
href="http://datasys.cs.iit.edu/%7Eskrieder/"
target="_blank">http://datasys.cs.iit.edu/~skrieder/</a></font></div>
</div>
</div>
</div>
</div>
</div>
<span class="HOEnZb"><font color="#888888"> </font></span></blockquote>
<span class="HOEnZb"><font color="#888888"> <br>
<br>
<pre cols="72">--
Justin M Wozniak
</pre>
</font></span></div>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<font face="Times" size="3">Scott J. Krieder<br>
</font>
<div>
<div><font face="Times" size="3">C: 419-685-0410<br>
</font>
<div><font face="Times" size="3">E: <a
moz-do-not-send="true" href="mailto:skrieder@iit.edu"
target="_blank">skrieder@iit.edu</a><br>
</font>
<div><font face="Times" size="3"><a moz-do-not-send="true"
href="http://datasys.cs.iit.edu/%7Eskrieder/"
target="_blank">http://datasys.cs.iit.edu/~skrieder/</a></font></div>
</div>
</div>
</div>
</div>
</blockquote>
<br>
<br>
<pre class="moz-signature" cols="72">--
Justin M Wozniak
</pre>
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