<div dir="ltr">Hi All,<div><br></div><div style>I'm down to 1 error on the Turbine install on Raven:</div><div style><span style="font-family:Arial">p01684@raven:~/exm/turbine/trunk/code> make test_results</span><br>
</div><div style><p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial"> SH<span class="" style="white-space:pre"> </span>tests/lib-turbine.result</font></p><p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial">make: *** [tests/lib-turbine.result] Error 1</font></p>
<p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial">p01684@raven:~/exm/turbine/trunk/code> cat tests/lib-turbine.out </font></p><p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial">mpiexec: unexpected error - no non-PBS mpiexec in PATH</font></p>
<p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial"><br></font></p><p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial">Has anyone seen this error on a Cray machine before?</font></p></div><div><br></div>
<div style>Other than that error I have the Turbine stack installed on Raven. I'm still working to install stc, which I still need ant to install. Here are my notes:</div><div style><br></div><div style>I used the Cray notes from here:</div>
<div style><a href="https://sites.google.com/site/exmproject/development/turbine---build">https://sites.google.com/site/exmproject/development/turbine---build</a><br></div><div style><br></div><div style>On Raven use:</div>
<div style><span style="font-family:arial,sans-serif;font-size:13px">/opt/cray/mpt/</span><span style="font-family:arial,sans-serif;font-size:13px">default/gni/mpich2-gnu/46</span><br></div><div style><br></div><div style>
<div style="font-family:arial,sans-serif;font-size:13px">For ADLB:<div>./configure --prefix=/home/users/p01684/Public/sfw/lb CC=gcc CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46/include LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib -lmpich" --with-c-utils=/home/users/p01684/Public/sfw/c-utils --enable-mpi-2<br>
</div><div><br></div><div>I modified the Makefile and swapped gcc for two instances of mpicc.</div><div><br></div></div><div style="font-family:arial,sans-serif;font-size:13px">I then installed SWIG from source with the configuration:</div>
<div style="font-family:arial,sans-serif;font-size:13px"><b style="font-size:medium;font-family:Times;font-weight:normal"><p dir="ltr" style="line-height:1.15;margin-top:0pt;margin-bottom:0pt"><span style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">./configure --prefix=/home/users/p01684/Public/sfw/swig --without-pcre</span></p>
</b></div><div style="font-family:arial,sans-serif;font-size:13px"><br></div><div style="font-family:arial,sans-serif;font-size:13px">I configure turbine with:</div><div><p dir="ltr" style="font-family:Times;font-size:medium;line-height:1.15;margin-bottom:0pt;margin-top:0pt">
<span style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">./configure --prefix=/home/users/p01684/Public/sfw/turbine --with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46</span></p>
<p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial"><br></font></p><p style="margin-bottom:0pt;margin-top:0pt"><font face="Arial">-Scott</font></p><p></p></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">
On Tue, Apr 16, 2013 at 5:43 AM, Michael Wilde <span dir="ltr"><<a href="mailto:wilde@mcs.anl.gov" target="_blank" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=wilde@mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">wilde@mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">Scott,<br>
<br>
Were you able to get Swift/T running on Raven?<br>
<br>
If so, which version, and do you have an install there that I can use for my own tests (and to help get a demo ready and tested for Cray?)<br>
<br>
Tim, Justin, can you point me to a suggested Swift/T toolset on Beagle?<br>
<br>
Thanks,<br>
<br>
- Mike<br>
<div class=""><div class="h5"><br>
<br>
----- Original Message -----<br>
> From: "Scott Krieder" <<a href="mailto:skrieder@iit.edu" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=skrieder@iit.edu&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">skrieder@iit.edu</a>><br>
> To: "Justin M Wozniak" <<a href="mailto:wozniak@mcs.anl.gov" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=wozniak@mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">wozniak@mcs.anl.gov</a>><br>
> Cc: <a href="mailto:exm-user@lists.mcs.anl.gov" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=exm-user@lists.mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">exm-user@lists.mcs.anl.gov</a><br>
> Sent: Friday, April 12, 2013 3:02:04 PM<br>
> Subject: Re: [ExM Users] Installing Swift/T on Raven<br>
><br>
><br>
><br>
> Hi Justin,<br>
><br>
><br>
><br>
> For ADLB it doesn't recognize --with-mpi or --with-mpi-dir in the<br>
> configure file. So I pointed both flags to use the default:<br>
> ./configure --prefix=/home/users/p01684/Public/sfw/lb CC=gcc<br>
> CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46/include<br>
> LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib -lmpich"<br>
> --with-c-utils=/home/users/p01684/Public/sfw/c-utils<br>
><br>
><br>
><br>
> I modified the Makefile and swapped gcc for two instances of mpicc.<br>
><br>
><br>
> I then installed SWIG from source with the configuration:<br>
><br>
><br>
> ./configure --prefix=/home/users/p01684/Public/sfw/swig<br>
> --without-pcre<br>
><br>
><br>
> I configure turbine with:<br>
><br>
><br>
> ./configure --prefix=/home/users/p01684/Public/sfw/turbine<br>
> --with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46<br>
><br>
><br>
> However on "make package" there is an error with one of the blob<br>
> header files:<br>
> p01684@raven:~/exm/turbine/trunk/code> make package SWIG<br>
> src/tcl/blob/SwiftBlob.i src/tcl/blob/blob.h:25: Warning 201: Unable<br>
> to find 'stdbool.h'<br>
><br>
><br>
><br>
> Do you know if there is a module I can load so swig can find the<br>
> stdbool.h?<br>
><br>
><br>
> Thank you,<br>
> Scott<br>
><br>
><br>
><br>
><br>
><br>
> On Fri, Apr 12, 2013 at 1:44 PM, Justin M Wozniak <<br>
> <a href="mailto:wozniak@mcs.anl.gov" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=wozniak@mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">wozniak@mcs.anl.gov</a> > wrote:<br>
><br>
><br>
><br>
><br>
><br>
> That configure line points --prefix= ... /c-utils<br>
><br>
> Also, CFLAGS=-I... should point to an include directory.<br>
><br>
> Try setting<br>
><br>
> --with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46<br>
><br>
> and let me know what happens. I will try to get on Raven soon to test<br>
> this.<br>
><br>
><br>
><br>
> On 04/12/2013 12:57 PM, Scott Krieder wrote:<br>
><br>
><br>
><br>
><br>
><br>
><br>
><br>
> Hi Justin,<br>
><br>
> This is from a tarball from my machine where GeMTC and Swift are<br>
> working, I haven't updated past version 6770. Sorry to bounce around<br>
> with errors but I believe I had an earlier issue with the<br>
> c-utils/adlb install that lead to this turbine issue. When<br>
> configuring adlb I point it at the c-utils install and I get an<br>
> error regarding the MPI version.<br>
><br>
> I'm running:<br>
> ./configure --prefix=/home/users/p01684/Public/c-utils CC=gcc<br>
> --with-c-utils=/home/users/p01684/Public/sfw/c-utils<br>
> CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46<br>
> LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib -lmpich"<br>
><br>
> I noticed that there are many folders in:<br>
> /opt/cray/mpt/<br>
><br>
> Is there a good way to identify which version I should use within<br>
> /opt/cray/mpt? Or am I wrong in assuming that this versioning is<br>
> what is causing the "Could not preprocess maint/mpi_version.cpp"<br>
> error?<br>
><br>
> Thanks,<br>
> Scott<br>
><br>
> ==error message==<br>
> checking for cp that supports -u... yes<br>
> using MPE: no<br>
> checking for<br>
> /home/users/p01684/Public/sfw/c-utils/include/c-utils.h... yes<br>
> using ExM c-utils in /home/users/p01684/Public/sfw/c-utils ...<br>
> checking MPI version... maint/mpi_version.cpp:23:17: error: mpi.h: No<br>
> such file or directory<br>
> configure: error: Could not preprocess maint/mpi_version.cpp<br>
><br>
><br>
><br>
><br>
><br>
><br>
><br>
> On Fri, Apr 12, 2013 at 11:28 AM, Justin M Wozniak <<br>
> <a href="mailto:wozniak@mcs.anl.gov" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=wozniak@mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">wozniak@mcs.anl.gov</a> > wrote:<br>
><br>
><br>
><br>
><br>
><br>
><br>
> Hi<br>
><br>
> Is this with trunk or with the release package?<br>
><br>
> --with-mpi-dir may have been replaced by --with-mpi<br>
><br>
> Justin<br>
><br>
><br>
> On 04/12/2013 11:05 AM, Scott Krieder wrote:<br>
><br>
><br>
><br>
><br>
><br>
><br>
> Hi All,<br>
><br>
><br>
> I'm trying to install Swift/T on Raven. I followed the notes about<br>
> Cray systems.<br>
><br>
><br>
> When I configure turbine with:<br>
> ./configure --prefix=/home/users/p01684/Public/sfw/turbine<br>
> --enable-custom<br>
> --with-mpi-dir=/opt/cray/mpt/default/xt/gemini/mpich2-gnu/46<br>
><br>
><br>
><br>
> I get a long error about "could not find directory" in reference to<br>
> mpicc. Is there something I should do in addition to the --with-mpi<br>
> flag?<br>
><br>
><br>
> Thanks,<br>
> Scott<br>
><br>
><br>
> ==Error Message==<br>
><br>
> checking for<br>
> /ufs/home/users/p01684/Public/sfw/c-utils/include/c-utils.h... yes<br>
> which: no mpicc in<br>
> (/opt/pbs/10.4.0.101257/bin:/opt/cray/atp/1.6.2/bin:/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin:/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin:/opt/toolworks/totalview.8.11.0-1/bin:/opt/totalview-support/1.1.4/bin:/opt/cray/cce/8.1.4/cray-binutils/x86_64-unknown-linux-gnu/bin:/opt/cray/cce/8.1.4/craylibs/x86-64/bin:/opt/cray/cce/8.1.4/cftn/bin:/opt/cray/cce/8.1.4/CC/bin:/opt/cray/xt-asyncpe/5.20.11/bin:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin:/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin:/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin:/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin:/opt/cray/lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0401.6845.9.1-1.0401.38658.11.3/sbin:/opt/cray/lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0401.6845.9.1-1.0401.38658.11.3/bin:/opt/cray/MySQL/5.0.64-1.0000.5053.22.1/sbin:/opt/cray/MySQL/5.0.64-1.0000.5053.22.1/bin:/opt/cray/sdb/1.0-1.0401.38148.4.27.gem/bin:/opt/cray/nodestat/2.<br>
> 2-1.0401. 37252.2.1.gem /bin:/opt /modules/<br>
> <a href="http://3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin" target="_blank">3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin</a><br>
> )<br>
><br>
><br>
> ./configure: line 4032: ((: ! : syntax error: operand expected (error<br>
> token is " ")<br>
> checking for 0... no<br>
> configure: error: Could not find directory<br>
><br>
><br>
><br>
><br>
><br>
> --<br>
> Scott J. Krieder<br>
><br>
><br>
> C: <a href="tel:419-685-0410" value="+14196850410">419-685-0410</a><br>
><br>
> E: <a href="mailto:skrieder@iit.edu" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=skrieder@iit.edu&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">skrieder@iit.edu</a><br>
><br>
> <a href="http://datasys.cs.iit.edu/~skrieder/" target="_blank">http://datasys.cs.iit.edu/~skrieder/</a><br>
><br>
><br>
> _______________________________________________<br>
> ExM-user mailing list <a href="mailto:ExM-user@lists.mcs.anl.gov" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=ExM-user@lists.mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">ExM-user@lists.mcs.anl.gov</a><br>
> <a href="https://lists.mcs.anl.gov/mailman/listinfo/exm-user" target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/exm-user</a><br>
><br>
> --<br>
> Justin M Wozniak<br>
><br>
> _______________________________________________<br>
> ExM-user mailing list<br>
> <a href="mailto:ExM-user@lists.mcs.anl.gov" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=ExM-user@lists.mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">ExM-user@lists.mcs.anl.gov</a><br>
> <a href="https://lists.mcs.anl.gov/mailman/listinfo/exm-user" target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/exm-user</a><br>
><br>
><br>
><br>
><br>
><br>
><br>
> --<br>
> Scott J. Krieder<br>
><br>
><br>
> C: <a href="tel:419-685-0410" value="+14196850410">419-685-0410</a><br>
><br>
> E: <a href="mailto:skrieder@iit.edu" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=skrieder@iit.edu&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">skrieder@iit.edu</a><br>
><br>
> <a href="http://datasys.cs.iit.edu/~skrieder/" target="_blank">http://datasys.cs.iit.edu/~skrieder/</a><br>
><br>
> --<br>
> Justin M Wozniak<br>
><br>
><br>
><br>
> --<br>
> Scott J. Krieder<br>
><br>
><br>
> C: <a href="tel:419-685-0410" value="+14196850410">419-685-0410</a><br>
><br>
> E: <a href="mailto:skrieder@iit.edu" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=skrieder@iit.edu&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">skrieder@iit.edu</a><br>
><br>
> <a href="http://datasys.cs.iit.edu/~skrieder/" target="_blank">http://datasys.cs.iit.edu/~skrieder/</a><br>
> _______________________________________________<br>
> ExM-user mailing list<br>
> <a href="mailto:ExM-user@lists.mcs.anl.gov" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=ExM-user@lists.mcs.anl.gov&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">ExM-user@lists.mcs.anl.gov</a><br>
> <a href="https://lists.mcs.anl.gov/mailman/listinfo/exm-user" target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/exm-user</a><br>
><br>
</div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br><font face="Times" size="3">Scott J. Krieder<br></font><div><div><font face="Times" size="3">C: 419-685-0410<br></font><div><font face="Times" size="3">E: <a href="mailto:skrieder@iit.edu" target="_blank" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=skrieder@iit.edu&cc=&bcc=&su=&body=','_blank','location=yes,menubar=yes,resizable=yes,width=800,height=600');return false;">skrieder@iit.edu</a><br>
</font><div><font face="Times" size="3"><a href="http://datasys.cs.iit.edu/~skrieder/" target="_blank">http://datasys.cs.iit.edu/~skrieder/</a></font></div></div></div></div>
</div></div>