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<div class="moz-cite-prefix">Hi Judit,<br>
<br>
Is there any chance that we could have a look at your log to help
debug it? You can send it off-list if you prefer, and we can also
tell you how to anonymize the information (file names, command
line, etc.) in it first if needed.<br>
<br>
As a side note, Florin Isaila implemented some Darshan extensions
(which can be found in the darshan-florin-extensions branch in
git) that include explicit hooks you can call to enable and
disable Darshan at runtime. It will create a separate log file
for each period that you have enabled Darshan. That is another
option if we can't get the summary-per-file tool working quickly,
but you should consider that branch to be experimental for now.<br>
<br>
thanks,<br>
-Phil<br>
<br>
On 02/01/2016 03:58 AM, Judit Planas wrote:<br>
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<pre>Hi Rob,
Thanks for your reply.
Unfortunately, I already tried darshan-summary-per-file.sh, but it
didn't work for me: some of the charts and tables in the generated PDF
are blank or filled with 0's.
For example, 'I/O sizes' and 'I/O pattern' charts are completely blank.
And the 'Average I/O per process' and 'Data Transfer Per Filesystem'
tables are filled with either 0's or 'N/A'. However, I know the file was
created by my application and around 16 MB of data were written (that is
the size of the file at the end of the execution).
When running the darshan-summary-per-file.sh script, I get the following
messages for the file I'm interested in (I guess the PDF charts are
blank because of the warnings...):
=======================================================
Slowest unique file time: 0
Slowest shared file time: 65.503991
Total bytes read and written by app (may be incorrect): 0
Total absolute I/O time: 65.503991
Warning: empty y range [0:0], adjusting to [-1:1]
Warning: empty y range [0:0], adjusting to [-1:1]
Status: Generating summary for file 81 of 177: allcurrents.bbp
=======================================================
Any idea?
Thanks in advance,
Judit
> On 01/28/2016 05:05 AM, Judit Planas wrote:
>><i> Hello,
</i>>><i>
</i>>><i> I am using Darshan to profile my application and I wonder if it is
</i>>><i> possible to enable/disable Darshan profiling for arbitrary parts of the</i>
>><i> application.
</i>>><i>
</i>>><i> The thing is that my application does a lot of I/O work, but I only want
</i>>><i> to profile a small part. If I profile the whole application, the reports
</i>>><i> have a lot of noise from the I/O part that I do not want to profile.
</i>>><i>
</i>>><i> Darshan version is 2.3.1 (but I can update it to the latest one if
</i>>><i> needed) and I am running on a BG/Q system.
</i>>
> There are two things that might help you:
>
> - darshan-summary-per-file.sh might do the trick? you can generate
> profiles on a per-file basis when you want to, for example, exclude
> reading in the input deck and focus only on output. This approach works
> well if there are particular files you want to study, but not so well if
> there's a particular phase of I/O you are most concerned about:
>
> - I don't know if anyone has tried using MPI_PCONTROL with darshan. I
> don't think Darshan knows what to do with that routine, anyway.
>
> ==rob
>
>
>><i>
</i>><i>> Thanks in advance,
</i>><i>> Judit
</i>><i>> _______________________________________________
</i>><i>> Darshan-users mailing list
</i>><i>> <a moz-do-not-send="true" href="https://lists.mcs.anl.gov/mailman/listinfo/darshan-users">Darshan-users at lists.mcs.anl.gov</a>
</i>><i>> <a moz-do-not-send="true" href="https://lists.mcs.anl.gov/mailman/listinfo/darshan-users">https://lists.mcs.anl.gov/mailman/listinfo/darshan-users</a>
</i></pre>
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