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<h3>
Shane Snyder pushed to branch master
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/97699ea753767f9f44207c05f80b3b4b57581f2c">97699ea7</a></strong>
<div>
<span>by Tyler Reddy</span>
<i>at 2021-04-21T16:11:22-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">TST: add DarshanReport deepcopy test
* add a regression test for the `__deepcopy__` method
of `DarshanReport`; verifies floating point value
similarity to original data and lack of memory overlap
</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/f471874fa92d9e6a7061429cc0cf4e1ff9da5188">f471874f</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2021-05-11T15:42:34-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'treddy/darshan-treddy_test_darshanreport_deepcopy' into HEAD
</pre>
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<h4>1 changed file:</h4>
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<a href="#3722cb6c9f52df39488c1f91eac9715f502bf32a">
darshan-util/pydarshan/tests/test_report.py
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<h4>Changes:</h4>
<li id="3722cb6c9f52df39488c1f91eac9715f502bf32a">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/compare/457b69ce90530f23856c22ae16fd752e1c7dc69e...f471874fa92d9e6a7061429cc0cf4e1ff9da5188#3722cb6c9f52df39488c1f91eac9715f502bf32a"><strong>darshan-util/pydarshan/tests/test_report.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,11 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="s" style="color: #d14;">"""Tests for `pydarshan` package."""</span></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">copy</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pytest</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">numpy.testing</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">assert_allclose</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">darshan</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -133,3 +137,20 @@ def test_json_fidelity():</td>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="python"> <span class="s" style="color: #d14;">'dvs'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="python"> <span class="s" style="color: #d14;">'rootfs'</span><span class="p">]:</span></span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">expected_value</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">actual_json</span></span>
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span><span class="s" style="color: #d14;">"key"</span><span class="p">,</span> <span class="p">[</span><span class="s" style="color: #d14;">'POSIX'</span><span class="p">,</span> <span class="s" style="color: #d14;">'MPI-IO'</span><span class="p">,</span> <span class="s" style="color: #d14;">'STDIO'</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span><span class="s" style="color: #d14;">"subkey"</span><span class="p">,</span> <span class="p">[</span><span class="s" style="color: #d14;">'counters'</span><span class="p">,</span> <span class="s" style="color: #d14;">'fcounters'</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_deepcopy_fidelity_darshan_report</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">,</span> <span class="n" style="color: #333;">subkey</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># regression guard for the __deepcopy__() method</span></span>
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># of DarshanReport class</span></span>
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># note that to_numpy() also performs a deepcopy</span></span>
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="python"> <span class="n" style="color: #333;">report</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">darshan</span><span class="p">.</span><span class="n" style="color: #333;">DarshanReport</span><span class="p">(</span><span class="s" style="color: #d14;">"tests/input/sample.darshan"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="python"> <span class="n" style="color: #333;">report_deepcopy</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">copy</span><span class="p">.</span><span class="n" style="color: #333;">deepcopy</span><span class="p">(</span><span class="n" style="color: #333;">report</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># the deepcopied records should be identical</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># within floating point tolerance</span></span>
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="python"> <span class="n" style="color: #333;">assert_allclose</span><span class="p">(</span><span class="n" style="color: #333;">report_deepcopy</span><span class="p">.</span><span class="n" style="color: #333;">data</span><span class="p">[</span><span class="s" style="color: #d14;">'records'</span><span class="p">][</span><span class="n" style="color: #333;">key</span><span class="p">].</span><span class="n" style="color: #333;">to_numpy</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="n" style="color: #333;">subkey</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="python"> <span class="n" style="color: #333;">report</span><span class="p">.</span><span class="n" style="color: #333;">data</span><span class="p">[</span><span class="s" style="color: #d14;">'records'</span><span class="p">][</span><span class="n" style="color: #333;">key</span><span class="p">].</span><span class="n" style="color: #333;">to_numpy</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="n" style="color: #333;">subkey</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># a deepcopy should not share memory bounds</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># with the original object (or deepcopies thereof)</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">np</span><span class="p">.</span><span class="n" style="color: #333;">may_share_memory</span><span class="p">(</span><span class="n" style="color: #333;">report_deepcopy</span><span class="p">.</span><span class="n" style="color: #333;">data</span><span class="p">[</span><span class="s" style="color: #d14;">'records'</span><span class="p">][</span><span class="n" style="color: #333;">key</span><span class="p">].</span><span class="n" style="color: #333;">to_numpy</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="n" style="color: #333;">subkey</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="python"> <span class="n" style="color: #333;">report</span><span class="p">.</span><span class="n" style="color: #333;">data</span><span class="p">[</span><span class="s" style="color: #d14;">'records'</span><span class="p">][</span><span class="n" style="color: #333;">key</span><span class="p">].</span><span class="n" style="color: #333;">to_numpy</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="n" style="color: #333;">subkey</span><span class="p">])</span></span></pre>
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