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<h3>
Shane Snyder pushed to branch master
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/6616d73b8667820ebac61759d9f66aaed08d1f74">6616d73b</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2021-03-26T16:37:33-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">runtime docs typos
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<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/f1b80c21e6693eb8b2a153a2d5fc25f08f1058c0">f1b80c21</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2021-03-26T16:49:37-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">updated H5D counter documentation
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<h4>4 changed files:</h4>
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<a href="#ce35bd04c4558598783b7b3b44035e98e07a7b46">
darshan-hdf5-log-format.h
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<li class="file-stats">
<a href="#c1f1275094e9957965ea40cf5852335b4164fd05">
darshan-runtime/doc/darshan-runtime.txt
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<a href="#767555317036ed1bce94879712f2cb668969978f">
darshan-util/darshan-hdf5-logutils.c
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<a href="#00fda3684246660c53077955f537d75b3aa90000">
darshan-util/doc/darshan-util.txt
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<h4>Changes:</h4>
<li id="ce35bd04c4558598783b7b3b44035e98e07a7b46">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/compare/f0835bed5024d4e02e569dbd176edc6d8c4dd318...f1b80c21e6693eb8b2a153a2d5fc25f08f1058c0#ce35bd04c4558598783b7b3b44035e98e07a7b46"><strong>darshan-hdf5-log-format.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -239,6 +239,7 @@ struct darshan_hdf5_file</td>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * every HDF5 dataset opened by the original application. For the HDF5 module,</span></span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * the record includes:</span></span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *      - a darshan_base_record structure, which contains the record id & rank</span></span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *      - the Darshan record ID of the file the dataset belongs to</span></span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *      - integer dataset I/O statistics (open, read/write counts, etc)</span></span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *      - floating point dataset I/O statistics (timestamps, cumulative timers, etc.)</span></span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/compare/f0835bed5024d4e02e569dbd176edc6d8c4dd318...f1b80c21e6693eb8b2a153a2d5fc25f08f1058c0#c1f1275094e9957965ea40cf5852335b4164fd05"><strong>darshan-runtime/doc/darshan-runtime.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -231,7 +231,7 @@ instrument applications at compile time.</td>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext">=== Option 1: Instrumenting MPI applications at compile time</span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext">This method is applicable to C, Fortran, and C++ MPI applications</span>
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="plaintext">(regardless of whether they are static or dynamicly linked) and is the most</span>
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="plaintext">(regardless of whether they are static or dynamic<span class="idiff left right">al</span>ly linked) and is the most</span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext">straightforward method to apply transparently system-wide.  It works by</span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext">injecting additional libraries and options into the linker command line to</span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext">intercept relevant I/O calls.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -576,7 +576,7 @@ recommend using mpicc with GNU compilers to compile Darshan.</td>
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<td class="diff-line-num old_line" data-linenumber="576" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
576
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<td class="diff-line-num new_line" data-linenumber="576" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
576
</td>
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<pre style="margin: 0;"> <span id="LC576" class="line" lang="plaintext">----</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
577
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<td class="diff-line-num new_line" data-linenumber="577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
577
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC577" class="line" lang="plaintext"></span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="578" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
578
</td>
<td class="diff-line-num new_line" data-linenumber="578" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
578
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC578" class="line" lang="plaintext">The darshan-gen-* scripts described earlier in this document can be used</span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
579
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<td class="diff-line-num new_line old" data-linenumber="579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC579" class="line" lang="plaintext">to create variants of the standard mpicc/mpicxx/mpif77/mpif90 scipts</span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="580" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
579
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC579" class="line" lang="plaintext">to create variants of the standard mpicc/mpicxx/mpif77/mpif90 sc<span class="idiff left right">r</span>ipts</span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="580" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
580
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<td class="diff-line-num new_line" data-linenumber="580" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
580
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC580" class="line" lang="plaintext">that are Darshan enabled.  These scripts will work correctly for both</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="581" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
581
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<td class="diff-line-num new_line" data-linenumber="581" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
581
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<pre style="margin: 0;"> <span id="LC581" class="line" lang="plaintext">dynamic and statically linked executables.</span>
</pre>
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582
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582
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC582" class="line" lang="plaintext"></span>
</pre>
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<li id="767555317036ed1bce94879712f2cb668969978f">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/compare/f0835bed5024d4e02e569dbd176edc6d8c4dd318...f1b80c21e6693eb8b2a153a2d5fc25f08f1058c0#767555317036ed1bce94879712f2cb668969978f"><strong>darshan-util/darshan-hdf5-logutils.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -446,7 +446,7 @@ static void darshan_log_print_hdf5_dataset_description(int ver)</td>
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<td class="diff-line-num old_line" data-linenumber="446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
446
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<td class="diff-line-num new_line" data-linenumber="446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
446
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<pre style="margin: 0;"> <span id="LC446" class="line" lang="c">    <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"#   H5D_F_MAX_*_TIME: duration of the slowest H5D read and write operations.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="447" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
447
</td>
<td class="diff-line-num new_line" data-linenumber="447" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
447
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<pre style="margin: 0;"> <span id="LC447" class="line" lang="c">    <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"#   H5D_F_*_RANK_TIME: fastest and slowest I/O time for a single rank (for shared datasets).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
448
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<td class="diff-line-num new_line" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
448
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<pre style="margin: 0;"> <span id="LC448" class="line" lang="c">    <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"#   H5D_F_VARIANCE_RANK_*: variance of total I/O time and bytes moved for all ranks (for shared datasets).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
449
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<td class="diff-line-num new_line old" data-linenumber="449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="c">    <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"#   H5D_FILE_REC_ID: Darshan <span class="idiff left right">record ID corresponding to the dataset</span>.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="450" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
449
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="c">    <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"#   H5D_FILE_REC_ID: Darshan <span class="idiff left right">file record ID of the file the dataset belongs to</span>.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="450" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
450
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<td class="diff-line-num new_line" data-linenumber="450" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
450
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<pre style="margin: 0;"> <span id="LC450" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="451" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
451
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<td class="diff-line-num new_line" data-linenumber="451" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
451
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<pre style="margin: 0;"> <span id="LC451" class="line" lang="c">    <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">ver</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="452" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
452
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<td class="diff-line-num new_line" data-linenumber="452" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC452" class="line" lang="c">    <span class="p">{</span></span>
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<li id="00fda3684246660c53077955f537d75b3aa90000">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/compare/f0835bed5024d4e02e569dbd176edc6d8c4dd318...f1b80c21e6693eb8b2a153a2d5fc25f08f1058c0#00fda3684246660c53077955f537d75b3aa90000"><strong>darshan-util/doc/darshan-util.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -417,6 +417,7 @@ value of 1 MiB for optimal file alignment.</td>
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<pre style="margin: 0;"> <span id="LC417" class="line" lang="plaintext">| H5D_F_SLOWEST_RANK_TIME | The time of the rank which had the largest amount of time spent in H5D I/O</span>
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<pre style="margin: 0;"> <span id="LC418" class="line" lang="plaintext">| H5D_F_VARIANCE_RANK_TIME | The population variance for H5D I/O time of all the ranks</span>
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<pre style="margin: 0;"> <span id="LC419" class="line" lang="plaintext">| H5D_F_VARIANCE_RANK_BYTES | The population variance for bytes transferred of all the ranks at H5D level</span>
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="plaintext">| H5D_FILE_REC_ID | Darshan file record ID of the file the dataset belongs to</span>
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<pre style="margin: 0;"> <span id="LC421" class="line" lang="plaintext">|====</span>
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<pre style="margin: 0;"> <span id="LC422" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC423" class="line" lang="plaintext">.PnetCDF module</span>
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