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<h3>
Philip Carns pushed to branch carns/issue-284-incomplete-warning
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/85d5df620e9b9db7bcd481444b0236a2c49b1c69">85d5df62</a></strong>
<div>
<span>by Phil Carns</span>
<i>at 2021-03-15T16:22:18-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">improve incomplete log handling in job-summary
- use new --show-incomplete option for darshan-parser
- refer the user to darshan-parser for more information
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#8f5ddb6450af14a90ba411fa534122256b3aea08">
darshan-util/darshan-job-summary/bin/darshan-job-summary.pl.in
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<a href="#e464f224521a25913828715e485170d093715db6">
darshan-util/darshan-job-summary/share/summary.tex
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<h4>Changes:</h4>
<li id="8f5ddb6450af14a90ba411fa534122256b3aea08">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/85d5df620e9b9db7bcd481444b0236a2c49b1c69#8f5ddb6450af14a90ba411fa534122256b3aea08"><strong>darshan-util/darshan-job-summary/bin/darshan-job-summary.pl.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -54,7 +54,10 @@ if ($verbose_flag)</td>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;">verbose: </span><span class="si" style="color: #d14;">$tmp_dir</span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="perl"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="nv" style="color: #008080;">PARSE_OUT</span><span class="p">,</span> <span class="p">"</span><span class="si" style="color: #d14;">$darshan_parser</span><span class="s2" style="color: #d14;"> --base --perf </span><span class="si" style="color: #d14;">$input_file</span><span class="s2" style="color: #d14;"> |</span><span class="p">")</span> <span class="o" style="font-weight: 600;">||</span> <span class="nb" style="color: #0086b3;">die</span><span class="p">("</span><span class="s2" style="color: #d14;">Can't execute </span><span class="se" style="color: #d14;">\"</span><span class="si" style="color: #d14;">$darshan_parser</span><span class="s2" style="color: #d14;"> </span><span class="si" style="color: #d14;">$input_file</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">: $!</span><span class="se" style="color: #d14;">\n</span><span class="p">");</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Note that we use the --show-incomplete option here because</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># darshan-job-summary will display a clear warning if this condition is</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># encountered anyway.</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="nv" style="color: #008080;">PARSE_OUT</span><span class="p">,</span> <span class="p">"</span><span class="si" style="color: #d14;">$darshan_parser</span><span class="s2" style="color: #d14;"> --show-incomplete --base --perf </span><span class="si" style="color: #d14;">$input_file</span><span class="s2" style="color: #d14;"> |</span><span class="p">")</span> <span class="o" style="font-weight: 600;">||</span> <span class="nb" style="color: #0086b3;">die</span><span class="p">("</span><span class="s2" style="color: #d14;">Can't execute </span><span class="se" style="color: #d14;">\"</span><span class="si" style="color: #d14;">$darshan_parser</span><span class="s2" style="color: #d14;"> </span><span class="si" style="color: #d14;">$input_file</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">: $!</span><span class="se" style="color: #d14;">\n</span><span class="p">");</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="nv" style="color: #008080;">FA_READ</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">></span><span class="si" style="color: #d14;">$tmp_dir</span><span class="s2" style="color: #d14;">/file-access-read.dat</span><span class="p">")</span> <span class="o" style="font-weight: 600;">||</span> <span class="nb" style="color: #0086b3;">die</span><span class="p">("</span><span class="s2" style="color: #d14;">error opening output file: $!</span><span class="se" style="color: #d14;">\n</span><span class="p">");</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="nv" style="color: #008080;">FA_WRITE</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">></span><span class="si" style="color: #d14;">$tmp_dir</span><span class="s2" style="color: #d14;">/file-access-write.dat</span><span class="p">")</span> <span class="o" style="font-weight: 600;">||</span> <span class="nb" style="color: #0086b3;">die</span><span class="p">("</span><span class="s2" style="color: #d14;">error opening output file: $!</span><span class="se" style="color: #d14;">\n</span><span class="p">");</span></span>
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<li id="e464f224521a25913828715e485170d093715db6">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/85d5df620e9b9db7bcd481444b0236a2c49b1c69#e464f224521a25913828715e485170d093715db6"><strong>darshan-util/darshan-job-summary/share/summary.tex</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,8 +37,9 @@</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="tex"><span class="k" style="font-weight: 600;">\twocolumn</span>[</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="tex"><span class="k" style="font-weight: 600;">\vspace</span><span class="p">{</span>3.5in<span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="tex"><span class="k" style="font-weight: 600;">\center</span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="tex"><span class="p">{</span><span class="k" style="font-weight: 600;">\bf</span> <span class="k" style="font-weight: 600;">\textcolor</span><span class="p">{</span>red<span class="p">}{</span>WARNING<span class="p">}}</span>: This Darshan log contains incomplete data</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="tex">which may skew results in this document.</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="tex"><span class="p">{</span><span class="k" style="font-weight: 600;">\bf</span> <span class="k" style="font-weight: 600;">\textcolor</span><span class="p">{</span>red<span class="p">}{</span>WARNING<span class="p">}}</span>: This Darshan log contains incomplete data.</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="tex">This happens when a module runs out of memory to store new record data.</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="tex">Please run darshan-parser on the log file for more information.</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="tex"><span class="k" style="font-weight: 600;">\endcenter</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="tex">]</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="tex"><span class="k" style="font-weight: 600;">\newpage</span></span>
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