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<h3>
Philip Carns pushed to branch master
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/1e44c0ae414646a35186ac7fb1691d5c12f0bf62">1e44c0ae</a></strong>
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<span>by Phil Carns</span>
<i>at 2021-03-10T16:51:38-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">brief documentation for spack packages
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</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/8de30ada258afda6bab37120bfcb21f8e63ca6c6">8de30ada</a></strong>
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<span>by Philip Carns</span>
<i>at 2021-03-10T15:52:51-06:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'carns/darshan-runtim-doc-spack' into 'master'
brief documentation for spack packages
Closes #308
See merge request darshan/darshan!81</pre>
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<h4>1 changed file:</h4>
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<a href="#c1f1275094e9957965ea40cf5852335b4164fd05">
darshan-runtime/doc/darshan-runtime.txt
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<h4>Changes:</h4>
<li id="c1f1275094e9957965ea40cf5852335b4164fd05">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/compare/649e3d35eeac81ae6273add1951aa338cf20334f...8de30ada258afda6bab37120bfcb21f8e63ca6c6#c1f1275094e9957965ea40cf5852335b4164fd05"><strong>darshan-runtime/doc/darshan-runtime.txt</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,7 +51,9 @@ http://www.mcs.anl.gov/darshan[Darshan web site].</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext">* C compiler (preferably GCC-compatible)</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext">* zlib development headers and library</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext">== Compilation</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext">== Conventional installation</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">=== Compilation</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext">.Configure and build example (with MPI support)</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext">----</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -115,7 +117,7 @@ group read access.</td>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext">* `--disable-lustre-mod`: disables compilation and use of Darshan's Lustre module (default=enabled)</span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext">* `--disable-mdhim-mod`: disables compilation and use of Darshan's MDHIM module (default=disabled)</span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext">== Environment preparation</span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext">==<span class="idiff left right">=</span> Environment preparation</span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext">Once darshan-runtime has been installed, you must prepare a location</span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext">in which to store the Darshan log files and configure an instrumentation method.</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -164,6 +166,56 @@ administrators group</td>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext">* recursively set the setgid bit on the log directories</span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext">====</span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext">== Spack installation</span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext">You can also install Darshan via https://spack.io/[Spack] as an alternative</span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext">to manual download, compilation, and installation. This may be</span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext">especially convenient for single-user installs. Darshan is divided</span>
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext">into two separate packages for the command line utilities and runtime</span>
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<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext">instrumentation. You can install either or both as follows:</span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"></span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext">----</span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext">spack install darshan-util</span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext">spack install darshan-runtime</span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext">----</span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"></span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext">[NOTE]</span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext">====</span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext">Darshan will generally compile and install fine using a variety of</span>
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<td class="diff-line-num new new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext">compilers, but we advise using a gcc compiler in Spack to compile Darshan</span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext">(regardless of what compiler you will use for your applications) to</span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext">ensure maximum runtime compatibility.</span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext">====</span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"></span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext">You can use the `spack info darshan-runtime` query to view the full list of</span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext">variants available for the darshan-runtime Spack package. For example, adding a `+slurm` to</span>
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<td class="diff-line-num new new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext">the command line (`spack install darshan-runtime+slurm`) will cause Darshan</span>
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<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext">to be compiled with support for gathering job ID information from the Slurm</span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext">scheduler.</span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"></span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext">The following commands will load the Darshan packages once they have been</span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext">installed:</span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"></span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext">----</span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext">spack load -r darshan-util</span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext">spack load -r darshan-runtime</span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext">----</span>
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext"></span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext">Note that the spack install of darshan-runtime will use an environment</span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext">variable named `$DARSHAN_LOG_DIR_PATH` to indicate where it should store log</span>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext">files. This variable is set to the user's home directory by default when</span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext">the package is loaded, but it may be overridden.</span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"></span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext">On Cray systems, you can also perform an additional step to load a</span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext">Cray-specific module file. This will make a module called `darshan`</span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext">available as described later in this document in the Cray platform recipe.</span>
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212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext">It enables automatic instrumentation when using the standard Cray compiler</span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext">wrappers.</span>
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214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext"></span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext">----</span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext">module use `spack location -i darshan-runtime`/share/craype-2.x/modulefiles</span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext">----</span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext"></span>
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167
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext">== Instrumenting applications</span>
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168
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"></span>
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169
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext">[NOTE]</span>
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