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<h3>
Sudheer Chunduri pushed to branch autoperf-mod-update
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
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Commits:
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<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/694963461948af1cee346cf6911e82160cba7edd">69496346</a></strong>
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<span>by Sudheer Chunduri</span>
<i>at 2021-02-17T21:49:42+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">APMPI module analysis python script
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<h4>2 changed files:</h4>
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darshan-util/pydarshan/examples/01_darshan-apmpi.ipynb
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darshan-util/pydarshan/examples/01_darshan-apmpi.py
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<h4>Changes:</h4>
<li id="089c0586af477a20cfea3ab1c383f1fac8de034e">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/694963461948af1cee346cf6911e82160cba7edd#089c0586af477a20cfea3ab1c383f1fac8de034e"><strong>darshan-util/pydarshan/examples/01_darshan-apmpi.ipynb</strong></a>
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<li id="135cb9748f47d5249c5797dffe42b05990474e63">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/694963461948af1cee346cf6911e82160cba7edd#135cb9748f47d5249c5797dffe42b05990474e63"><strong>darshan-util/pydarshan/examples/01_darshan-apmpi.py</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># coding: utf-8</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># # DarshanUtils for Python</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># This notebook gives an overwiew of features provided by the Python bindings for DarshanUtils.</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># By default all AMMPI module records, metadata, and the name records are loaded when opening a Darshan log:</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"><span class="s" style="color: #d14;">get_ipython().run_line_magic('env', 'LD_LIBRARY_PATH=/projects/Performance/chunduri/Software/Temp/build/darshan-util/install/lib/')</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"><span class="s" style="color: #d14;">get_ipython().run_line_magic('env', 'PE_PKGCONFIG_LIBS=darshan-runtime')</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"><span class="s" style="color: #d14;">get_ipython().run_line_magic('env', 'PKG_CONFIG_PATH=/projects/Performance/chunduri/Software/Temp/build/darshan-runtime/lib/pkgconfig')</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"><span class="s" style="color: #d14;">get_ipython().run_line_magic('env', 'PATH=/projects/Performance/chunduri/Software/Temp/build/darshan-utils/bin:/opt/anaconda3x/bin:/opt/anaconda3x/condabin:/projects/Performance/chunduri/Work_backup_June252017/software/install/autotools/bin:/bin:/sbin:/opt/anaconda3x/bin:/usr/bin/usr/sbin:/usr/local/sbin:/usr/sbin:/dbhome/db2cat/sqllib/bin:/dbhome/db2cat/sqllib/adm:/dbhome/db2cat/sqllib/misc:/dbhome/db2cat/sqllib/gskit/bin:/opt/ibutils/bin:/home/chunduri/bin:/projects/Performance/chunduri/Software/Temp/build/darshan-util/install/bin')</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"><span class="s" style="color: #d14;">get_ipython().run_line_magic('env', 'darshan_prefix=/projects/Performance/chunduri/Software/Temp/build/darshan-runtime/install')</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"><span class="s" style="color: #d14;">get_ipython().run_line_magic('env', 'darshan_share=/projects/Performance/chunduri/Software/Temp/build/darshan-runtime/install/share')</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"><span class="s" style="color: #d14;">get_ipython().run_line_magic('env', 'darshan_libdir= -L${darshan_prefix}/lib')</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"><span class="s" style="color: #d14;">get_ipython().system('echo $LD_LIBRARY_PATH')</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"><span class="s" style="color: #d14;">get_ipython().system('echo $PATH')</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"><span class="s" style="color: #d14;">get_ipython().system('echo $PKG_CONFIG_PATH')</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#get_ipython().system("pwd")</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#get_ipython().run_line_magic("cd", "..")</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#get_ipython().system("pwd")</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">argparse</span></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">darshan</span></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">cffi</span></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span></span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pandas</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">matplotlib</span></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pprint</span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pandas</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">pd</span></span>
</pre>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">logging</span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"></span>
</pre>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">darshan.backend.cffi_backend</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">ffi</span></span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"></span>
</pre>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"><span class="n" style="color: #333;">logger</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">logging</span><span class="p">.</span><span class="n" style="color: #333;">getLogger</span><span class="p">(</span><span class="n" style="color: #333;">__name__</span><span class="p">)</span></span>
</pre>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># logger</span></span>
</pre>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">darshan.report</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">DarshanReport</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">darshan.backend.cffi_backend</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">backend</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">darshan</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pandas</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">pd</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">time</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"><span class="n" style="color: #333;">pp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pprint</span><span class="p">.</span><span class="n" style="color: #333;">PrettyPrinter</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">main</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"> <span class="n" style="color: #333;">parser</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">argparse</span><span class="p">.</span><span class="n" style="color: #333;">ArgumentParser</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"> <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="python"> <span class="s" style="color: #d14;">"--quiet"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="python"> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"quiet"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="python"> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"store_true"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="python"> <span class="n" style="color: #333;">default</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="python"> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Surpress zero count calls"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"> <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="python"> <span class="s" style="color: #d14;">"logname"</span><span class="p">,</span> <span class="n" style="color: #333;">metavar</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"logname"</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">type</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">str</span><span class="p">,</span> <span class="n" style="color: #333;">nargs</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Logname to parse"</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="python"> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">parse_args</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python"> <span class="n" style="color: #333;">report</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">darshan</span><span class="p">.</span><span class="n" style="color: #333;">DarshanReport</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">logname</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">read_all</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="python"> <span class="n" style="color: #333;">report</span><span class="p">.</span><span class="n" style="color: #333;">info</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"APMPI"</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">report</span><span class="p">.</span><span class="n" style="color: #333;">modules</span><span class="p">:</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"This log does not contain AutoPerf MPI data"</span><span class="p">)</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">report</span><span class="p">.</span><span class="n" style="color: #333;">mod_read_all_apmpi_records</span><span class="p">(</span><span class="s" style="color: #d14;">"APMPI"</span><span class="p">)</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># report.data.keys()</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="python"> <span class="n" style="color: #333;">report</span><span class="p">.</span><span class="n" style="color: #333;">update_name_records</span><span class="p">()</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"> <span class="n" style="color: #333;">report</span><span class="p">.</span><span class="n" style="color: #333;">info</span><span class="p">()</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"> <span class="n" style="color: #333;">header_rec</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">report</span><span class="p">.</span><span class="n" style="color: #333;">records</span><span class="p">[</span><span class="s" style="color: #d14;">"APMPI"</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"# darshan log version: "</span><span class="p">,</span> <span class="n" style="color: #333;">header_rec</span><span class="p">[</span><span class="s" style="color: #d14;">"version"</span><span class="p">])</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="python"> <span class="n" style="color: #333;">sync_flag</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">header_rec</span><span class="p">[</span><span class="s" style="color: #d14;">"sync_flag"</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"APMPI Variance in total mpi time: "</span><span class="p">,</span> <span class="n" style="color: #333;">header_rec</span><span class="p">[</span><span class="s" style="color: #d14;">"variance_total_mpitime"</span><span class="p">],</span> <span class="s" style="color: #d14;">"</span><span class="si" style="color: #d14;">\</span><span class="se" style="color: #d14;">n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">sync_flag</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="python"> <span class="s" style="color: #d14;">"APMPI Variance in total mpi sync time: "</span><span class="p">,</span> <span class="n" style="color: #333;">header_rec</span><span class="p">[</span><span class="s" style="color: #d14;">"variance_total_mpisynctime"</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="python"> <span class="n" style="color: #333;">df_apmpi</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pd</span><span class="p">.</span><span class="n" style="color: #333;">DataFrame</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">rec</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">report</span><span class="p">.</span><span class="n" style="color: #333;">records</span><span class="p">[</span><span class="s" style="color: #d14;">"APMPI"</span><span class="p">][</span><span class="mi" style="color: #099;">1</span><span class="p">:]:</span> <span class="c1" style="color: #998; font-style: italic;"># skip the first record which is header record</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="python"> <span class="n" style="color: #333;">mpi_nonzero_callcount</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">k</span><span class="p">,</span> <span class="n" style="color: #333;">v</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">].</span><span class="n" style="color: #333;">items</span><span class="p">():</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">k</span><span class="p">.</span><span class="n" style="color: #333;">endswith</span><span class="p">(</span><span class="s" style="color: #d14;">"_CALL_COUNT"</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span><span class="p">:</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="python"> <span class="n" style="color: #333;">mpi_nonzero_callcount</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">[:</span> <span class="o" style="font-weight: 600;">-</span><span class="p">(</span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="s" style="color: #d14;">"CALL_COUNT"</span><span class="p">))])</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="python"></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="python"> <span class="n" style="color: #333;">df_rank</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pd</span><span class="p">.</span><span class="n" style="color: #333;">DataFrame</span><span class="p">()</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">mpiop</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">mpi_nonzero_callcount</span><span class="p">:</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"> <span class="n" style="color: #333;">ncall</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"> <span class="n" style="color: #333;">ncount</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"CALL_COUNT"</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python"> <span class="n" style="color: #333;">nsize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"TOTAL_BYTES"</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"> <span class="n" style="color: #333;">h0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"MSG_SIZE_AGG_0_256"</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"> <span class="n" style="color: #333;">h1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"MSG_SIZE_AGG_256_1K"</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python"> <span class="n" style="color: #333;">h2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"MSG_SIZE_AGG_1K_8K"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"> <span class="n" style="color: #333;">h3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"MSG_SIZE_AGG_8K_256K"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"> <span class="n" style="color: #333;">h4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"MSG_SIZE_AGG_256K_1M"</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"> <span class="n" style="color: #333;">h5</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"MSG_SIZE_AGG_1M_PLUS"</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"> <span class="n" style="color: #333;">ntime</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"TOTAL_TIME"</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="python"> <span class="n" style="color: #333;">mintime</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"MIN_TIME"</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="python"> <span class="n" style="color: #333;">maxtime</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"MAX_TIME"</span></span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">sync_flag</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="python"> <span class="n" style="color: #333;">totalsync</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mpiop</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"TOTAL_SYNC_TIME"</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{}</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"Rank"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"rank"</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"Node_ID"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"node_name"</span><span class="p">]</span></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"Call"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ncall</span><span class="p">[:</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"Total_Time"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">][</span><span class="n" style="color: #333;">ntime</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"Count"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">][</span><span class="n" style="color: #333;">ncount</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"Total_Bytes"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">].</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">nsize</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"[0-256B]"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">].</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"[256-1KB]"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">].</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"[1K-8KB]"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">].</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">h2</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"[8K-256KB]"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">].</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"256K-1MB"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">].</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">h4</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"[>1MB]"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">].</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"Min_Time"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">][</span><span class="n" style="color: #333;">mintime</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"Max_Time"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">][</span><span class="n" style="color: #333;">maxtime</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">sync_flag</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="python"> <span class="n" style="color: #333;">mpiopstat</span><span class="p">[</span><span class="s" style="color: #d14;">"Total_SYNC_Time"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec</span><span class="p">[</span><span class="s" style="color: #d14;">"all_counters"</span><span class="p">][</span><span class="n" style="color: #333;">totalsync</span><span class="p">]</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="python"> <span class="n" style="color: #333;">df_mpiop</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pd</span><span class="p">.</span><span class="n" style="color: #333;">DataFrame</span><span class="p">([</span><span class="n" style="color: #333;">mpiopstat</span><span class="p">],</span> <span class="n" style="color: #333;">columns</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">mpiopstat</span><span class="p">.</span><span class="n" style="color: #333;">keys</span><span class="p">())</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="python"> <span class="n" style="color: #333;">df_rank</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pd</span><span class="p">.</span><span class="n" style="color: #333;">concat</span><span class="p">([</span><span class="n" style="color: #333;">df_rank</span><span class="p">,</span> <span class="n" style="color: #333;">df_mpiop</span><span class="p">],</span> <span class="n" style="color: #333;">axis</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">).</span><span class="n" style="color: #333;">reset_index</span><span class="p">(</span><span class="n" style="color: #333;">drop</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="python"> <span class="n" style="color: #333;">df_rank</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">df_rank</span><span class="p">.</span><span class="n" style="color: #333;">sort_values</span><span class="p">(</span><span class="n" style="color: #333;">by</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"Total_Time"</span><span class="p">],</span> <span class="n" style="color: #333;">ascending</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="python"> <span class="n" style="color: #333;">df_apmpi</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pd</span><span class="p">.</span><span class="n" style="color: #333;">concat</span><span class="p">([</span><span class="n" style="color: #333;">df_apmpi</span><span class="p">,</span> <span class="n" style="color: #333;">df_rank</span><span class="p">],</span> <span class="n" style="color: #333;">axis</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">).</span><span class="n" style="color: #333;">reset_index</span><span class="p">(</span><span class="n" style="color: #333;">drop</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="n" style="color: #333;">df_apmpi</span><span class="p">)</span></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="python"></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'__main__'</span><span class="p">:</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="python"> <span class="n" style="color: #333;">main</span><span class="p">()</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># print(time.time(), time.clock())</span></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="python"></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="python"></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># A few of the internal data structures explained:</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="python"></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># In[ ]:</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="python"></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="python"></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># report.metadata # dictionary with raw metadata from darshan log</span></span>
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># report.modules # dictionary with raw module info from darshan log (need: technical, module idx)</span></span>
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># report.name_records # dictionary for resovling name records: id -> path/name</span></span>
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># report.records # per module "dataframes"/dictionaries holding loaded records</span></span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># The darshan report holds a variety of namespaces for report related data. All of them are also referenced in `report.data` at the moment, but reliance on this internal organization of the report object is discouraged once the API stabilized. Currently, `report.data` references the following information:</span></span></pre>
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