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<h3>
Sudheer Chunduri pushed to branch autoperf-mod-update
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
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<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/a899a9b0dddb0c35a777b627aba6deeea13eab5c">a899a9b0</a></strong>
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<span>by Sudheer Chunduri</span>
<i>at 2021-02-15T22:57:02+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">APMPI python util script corrections
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#59606561936d5b726ba86dc7aa70fc71d52ffd8a">
darshan-util/pydarshan/darshan/report.py
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+
darshan-util/pydarshan/examples/01_darshan-apmpi.ipynb
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<h4>Changes:</h4>
<li id="59606561936d5b726ba86dc7aa70fc71d52ffd8a">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/-/commit/a899a9b0dddb0c35a777b627aba6deeea13eab5c#59606561936d5b726ba86dc7aa70fc71d52ffd8a"><strong>darshan-util/pydarshan/darshan/report.py</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,8 +50,10 @@ _structdefs = {</td>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="python"> <span class="s" style="color: #d14;">"PNETCDF"</span><span class="p">:</span> <span class="s" style="color: #d14;">"struct darshan_pnetcdf_file **"</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="python"> <span class="s" style="color: #d14;">"POSIX"</span><span class="p">:</span> <span class="s" style="color: #d14;">"struct darshan_posix_file **"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="python"> <span class="s" style="color: #d14;">"STDIO"</span><span class="p">:</span> <span class="s" style="color: #d14;">"struct darshan_stdio_file **"</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="python"> <span class="s" style="color: #d14;">"APXC"</span><span class="p">:</span> <span class="s" style="color: #d14;">"struct darshan_apxc_perf_record **"</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="python"> <span class="s" style="color: #d14;">"APMPI"</span><span class="p">:</span> <span class="s" style="color: #d14;">"struct darshan_apmpi_perf_record **"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"> <span class="s" style="color: #d14;">"APXC-HEADER"</span><span class="p">:</span> <span class="s" style="color: #d14;">"struct darshan_apxc_header_record **"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"> <span class="s" style="color: #d14;">"APXC-PERF"</span><span class="p">:</span> <span class="s" style="color: #d14;">"struct darshan_apxc_perf_record **"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"> <span class="s" style="color: #d14;">"APMPI-HEADER"</span><span class="p">:</span> <span class="s" style="color: #d14;">"struct darshan_apmpi_header_record **"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"> <span class="s" style="color: #d14;">"APMPI-PERF"</span><span class="p">:</span> <span class="s" style="color: #d14;">"struct darshan_apmpi_perf_record **"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="python"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -394,7 +396,64 @@ class DarshanReport(object):</td>
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396
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<pre style="margin: 0;"> <span id="LC396" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC397" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span></span>
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<pre style="margin: 0;"> <span id="LC398" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">mod_read_all_apmpi_records</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">mod</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="python"> <span class="s" style="color: #d14;">""" </span></span>
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="python"><span class="s" style="color: #d14;"> Reads all APMPI records for provided module.</span></span>
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397
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<pre style="margin: 0;"> <span id="LC402" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="python"><span class="s" style="color: #d14;"> Args:</span></span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="python"><span class="s" style="color: #d14;"> mod (str): Identifier of module to fetch all records</span></span>
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="python"><span class="s" style="color: #d14;"> dtype (str): 'numpy' for ndarray (default), 'dict' for python dictionary</span></span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="python"></span>
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407
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="python"><span class="s" style="color: #d14;"> Return:</span></span>
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408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="python"><span class="s" style="color: #d14;"> None</span></span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="python"></span>
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">mod</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">data</span><span class="p">[</span><span class="s" style="color: #d14;">'modules'</span><span class="p">]:</span></span>
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412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">warnings</span><span class="p">:</span></span>
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413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="python"> <span class="n" style="color: #333;">logger</span><span class="p">.</span><span class="n" style="color: #333;">warning</span><span class="p">(</span><span class="s" style="color: #d14;">f"Skipping. Log does not contain data for mod: </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">mod</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span></span>
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="python"></span>
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416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="python"></span>
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417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="python"> <span class="n" style="color: #333;">supported</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">'APMPI'</span><span class="p">]</span> </span>
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418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">mod</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">supported</span><span class="p">:</span></span>
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419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">warnings</span><span class="p">:</span></span>
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420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="python"> <span class="n" style="color: #333;">logger</span><span class="p">.</span><span class="n" style="color: #333;">warning</span><span class="p">(</span><span class="s" style="color: #d14;">f" Skipping. Unsupported module: </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">mod</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;"> in in mod_read_all_apmpi_records(). Supported: </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">supported</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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421
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># skip mod</span></span>
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422
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span></span>
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423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="python"></span>
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424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="n" style="color: #333;">mod</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"-HEADER"</span><span class="p">)</span></span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="n" style="color: #333;">_structdefs</span><span class="p">[</span><span class="n" style="color: #333;">mod</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"-HEADER"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># handling options</span></span>
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dtype</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">dtype</span> <span class="k" style="font-weight: 600;">else</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span></span>
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">records</span><span class="p">[</span><span class="n" style="color: #333;">mod</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># update module metadata</span></span>
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431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">modules</span><span class="p">[</span><span class="n" style="color: #333;">mod</span><span class="p">][</span><span class="s" style="color: #d14;">'num_records'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span></span>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">mod</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">counters</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">counters</span><span class="p">[</span><span class="n" style="color: #333;">mod</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{}</span></span>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="python"></span>
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435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># fetch header record</span></span>
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="python"> <span class="n" style="color: #333;">header_rec</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">backend</span><span class="p">.</span><span class="n" style="color: #333;">log_get_apmpi_record</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">log</span><span class="p">,</span> <span class="n" style="color: #333;">_structdefs</span><span class="p">[</span><span class="n" style="color: #333;">mod</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"-HEADER"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># fetch records</span></span>
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="python"> <span class="n" style="color: #333;">rec</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">backend</span><span class="p">.</span><span class="n" style="color: #333;">log_get_apmpi_record</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">log</span><span class="p">,</span> <span class="n" style="color: #333;">_structdefs</span><span class="p">[</span><span class="n" style="color: #333;">mod</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"-PERF"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="python"> <span class="k" style="font-weight: 600;">while</span> <span class="n" style="color: #333;">rec</span> <span class="o" style="font-weight: 600;">!=</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'numpy'</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">records</span><span class="p">[</span><span class="n" style="color: #333;">mod</span><span class="p">].</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">rec</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">records</span><span class="p">[</span><span class="n" style="color: #333;">mod</span><span class="p">].</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">rec</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="python"></span>
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446
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">data</span><span class="p">[</span><span class="s" style="color: #d14;">'modules'</span><span class="p">][</span><span class="n" style="color: #333;">mod</span><span class="p">][</span><span class="s" style="color: #d14;">'num_records'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span></span>
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># fetch next</span></span>
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="python"> <span class="n" style="color: #333;">rec</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">backend</span><span class="p">.</span><span class="n" style="color: #333;">log_get_apmpi_record</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">log</span><span class="p">,</span> <span class="n" style="color: #333;">_structdefs</span><span class="p">[</span><span class="n" style="color: #333;">mod</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"-PERF"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC450" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">lookup_name_records</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">update_name_records</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="python"> </span>
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span> </span>
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="python"> </span>
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<pre style="margin: 0;"> <span id="LC457" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">mod_read_all_dxt_records</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">mod</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">reads</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">writes</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC458" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC459" class="line" lang="python"><span class="s" style="color: #d14;"> Reads all dxt records for provided module.</span></span>
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