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<h3>
Shane Snyder pushed to branch dev-detailed-hdf5-mod
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/66b9c9978d7b50028bc1c5bf2407a036acc0cf24">66b9c997</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2020-04-02T13:40:08-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix version warnings for H5F module
</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/8e0847f7006225ff6f700156ff62cfbb066e5e0c">8e0847f7</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2020-04-03T10:54:24-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">updated HDF5 documentation for darshan-util
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#767555317036ed1bce94879712f2cb668969978f">
darshan-util/darshan-hdf5-logutils.c
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<a href="#00fda3684246660c53077955f537d75b3aa90000">
darshan-util/doc/darshan-util.txt
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<h4>Changes:</h4>
<li id="767555317036ed1bce94879712f2cb668969978f">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/a3e75fe8b657da3ffdb72abef3a8dadf95da8145...8e0847f7006225ff6f700156ff62cfbb066e5e0c#767555317036ed1bce94879712f2cb668969978f"><strong>darshan-util/darshan-hdf5-logutils.c</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="370" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -370,6 +370,8 @@ static void darshan_log_print_hdf5_file_description(int ver)</td>
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370
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<pre style="margin: 0;"> <span id="LC370" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">ver</span> <span class="o" style="font-weight: 600;"><=</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span></span>
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371
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371
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<pre style="margin: 0;"> <span id="LC371" class="line" lang="c"> <span class="p">{</span></span>
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372
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<td class="diff-line-num new_line" data-linenumber="372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC372" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;"># WARNING: H5F module log format version <=2 does not support the following counters:</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"# </span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">- H5F_FLUSHES</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"# </span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">- H5F_USE_MPIIO</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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373
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375
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<pre style="margin: 0;"> <span id="LC375" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"# </span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">- H5F_F_META_TIME</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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374
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376
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<pre style="margin: 0;"> <span id="LC376" class="line" lang="c"> <span class="p">}</span></span>
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375
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<pre style="margin: 0;"> <span id="LC377" class="line" lang="c"></span>
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<li id="00fda3684246660c53077955f537d75b3aa90000">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/a3e75fe8b657da3ffdb72abef3a8dadf95da8145...8e0847f7006225ff6f700156ff62cfbb066e5e0c#00fda3684246660c53077955f537d75b3aa90000"><strong>darshan-util/doc/darshan-util.txt</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -321,9 +321,9 @@ value of 1 MiB for optimal file alignment.</td>
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<pre style="margin: 0;"> <span id="LC321" class="line" lang="plaintext">| MPIIO_SLOWEST_RANK_BYTES | The number of bytes transferred by the rank with the largest time spent in MPI I/O</span>
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<pre style="margin: 0;"> <span id="LC322" class="line" lang="plaintext">| MPIIO_F_*_START_TIMESTAMP | Timestamp that the first MPIIO file open/read/write/close operation began</span>
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<pre style="margin: 0;"> <span id="LC323" class="line" lang="plaintext">| MPIIO_F_*_END_TIMESTAMP | Timestamp that the last MPIIO file open/read/write/close operation ended</span>
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<pre style="margin: 0;">-<span id="LC324" class="line" lang="plaintext">| MPIIO_READ_TIME | Cumulative time spent reading at MPI level</span>
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<pre style="margin: 0;">-<span id="LC325" class="line" lang="plaintext">| MPIIO_WRITE_TIME | Cumulative time spent write and sync at MPI level</span>
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<pre style="margin: 0;">-<span id="LC326" class="line" lang="plaintext">| MPIIO_META_TIME | Cumulative time spent in open and close at MPI level</span>
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="plaintext">| MPIIO_<span class="idiff left right">F_</span>READ_TIME | Cumulative time spent reading at MPI level</span>
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="plaintext">| MPIIO_<span class="idiff left right">F_</span>WRITE_TIME | Cumulative time spent write and sync at MPI level</span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="plaintext">| MPIIO_<span class="idiff left right">F_</span>META_TIME | Cumulative time spent in open and close at MPI level</span>
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<pre style="margin: 0;"> <span id="LC327" class="line" lang="plaintext">| MPIIO_F_MAX_READ_TIME | Duration of the slowest individual MPI read operation</span>
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<pre style="margin: 0;"> <span id="LC328" class="line" lang="plaintext">| MPIIO_F_MAX_WRITE_TIME | Duration of the slowest individual MPI write operation</span>
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<pre style="margin: 0;"> <span id="LC329" class="line" lang="plaintext">| MPIIO_F_FASTEST_RANK_TIME | The time of the rank which had the smallest amount of time spent in MPI I/O (cumulative read, write, and meta times)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -362,15 +362,64 @@ value of 1 MiB for optimal file alignment.</td>
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<pre style="margin: 0;"> <span id="LC362" class="line" lang="plaintext">| STDIO_F_VARIANCE_RANK_BYTES | The population variance for bytes transferred of all the ranks</span>
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<pre style="margin: 0;"> <span id="LC363" class="line" lang="plaintext">|====</span>
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<pre style="margin: 0;"> <span id="LC364" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC365" class="line" lang="plaintext">.H<span class="idiff left right">DF5</span> module</span>
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="plaintext">.H<span class="idiff left right">5F</span> module</span>
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<pre style="margin: 0;"> <span id="LC366" class="line" lang="plaintext">[cols="40%,60%",options="header"]</span>
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<pre style="margin: 0;"> <span id="LC367" class="line" lang="plaintext">|====</span>
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<pre style="margin: 0;"> <span id="LC368" class="line" lang="plaintext">| counter name | description</span>
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<pre style="margin: 0;">-<span id="LC369" class="line" lang="plaintext">| HDF5_OPENS | Count of HDF5 opens</span>
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<pre style="margin: 0;">-<span id="LC370" class="line" lang="plaintext">| HDF5_F_*_START_TIMESTAMP | Timestamp that the first HDF5 file open/close operation began</span>
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<pre style="margin: 0;">-<span id="LC371" class="line" lang="plaintext">| HDF5_F_*_END_TIMESTAMP | Timestamp that the last HDF5 file open/close operation ended</span>
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="plaintext">| H5F_OPENS | Count of H5F opens</span>
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext">| H5F_FLUSHES | Count of H5F flushes</span>
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="plaintext">| H5F_USE_MPIIO | Flag indicating whether MPI-IO is used for accessing the file</span>
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="plaintext">| H5F_F_*_START_TIMESTAMP | Timestamp that the first H5F open/close operation began</span>
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="plaintext">| H5F_F_*_END_TIMESTAMP | Timestamp that the last H5F open/close operation ended</span>
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="plaintext">| H5F_F_META_TIME | Cumulative time spent in H5F open/close/flush operations</span>
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<pre style="margin: 0;"> <span id="LC375" class="line" lang="plaintext">|====</span>
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<pre style="margin: 0;"> <span id="LC376" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="plaintext">.H5D module</span>
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="plaintext">[cols="40%,60%",options="header"]</span>
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="plaintext">|====</span>
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext">| counter name | description</span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext">| H5D_OPENS | Count of H5D opens</span>
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382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="plaintext">| H5D_READS | Count of H5D reads</span>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="plaintext">| H5D_WRITES | Count of H5D writes</span>
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384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="plaintext">| H5D_FLUSHES | Count of H5D flushes</span>
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385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="plaintext">| H5D_BYTES_READ | Total number of bytes read from the dataset using H5D</span>
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386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="plaintext">| H5D_BYTES_WRITTEN | Total number of bytes written to the dataset using H5D</span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="plaintext">| H5D_RW_SWITCHES | Number of times that access toggled between read and write in consecutive H5D operations</span>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="plaintext">| H5D_REGULAR_HYPERSLAB_SELECTS | Number of H5D read/write ops with regular hyperslab selections</span>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="plaintext">| H5D_IRREGULAR_HYPERSLAB_SELECTS | Number of H5D read/write ops with irregular hyperslab selections</span>
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390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="plaintext">| H5D_POINT_SELECTS | Number of read/write ops with point selections</span>
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391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="plaintext">| H5D_MAX_READ_TIME_SIZE | Size of the slowest H5D read operation</span>
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392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="plaintext">| H5D_MAX_WRITE_TIME_SIZE | Size of the slowest H5D write operation</span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="plaintext">| H5D_SIZE_READ_AGG_* | Histogram of total size of read accesses at H5D level</span>
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394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="plaintext">| H5D_SIZE_WRITE_AGG_* | Histogram of total size of write accesses at H5D level</span>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="plaintext">| H5D_ACCESS[1-4]_ACCESS | Sizes of 4 most common H5D accesses</span>
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396
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="plaintext">| H5D_ACCESS[1-4]_LENGTH_D[1-5] | Access lengths along last 5 dimensions (D5 is fastest changing) of 4 most common H5D accesses</span>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="plaintext">| H5D_ACCESS[1-4]_STRIDE_D[1-5] | Access strides along last 5 dimensions (D5 is fastest changing) of 4 most common H5D accesses</span>
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398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="plaintext">| H5D_ACCESS[1-4]_COUNT | Count of 4 most common H5D aggregate access sizes</span>
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399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="plaintext">| H5D_DATASPACE_NDIMS | Number of dimensions in dataset's dataspace</span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="plaintext">| H5D_DATASPACE_NPOINTS | Number of points in dataset's dataspace</span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="plaintext">| H5D_DATATYPE_SIZE | Total size of dataset elements in bytes</span>
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402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="plaintext">| H5D_CHUNK_SIZE_D[1-5] | Chunk sizes in the last 5 dimensions of the dataset (D5 is the fastest changing dimension)</span>
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403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="plaintext">| H5D_USE_MPIIO_COLLECTIVE | Flag indicating use of MPI-IO collectives</span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="plaintext">| H5D_USE_DEPRECATED | Flag indicating whether deprecated create/open calls were used</span>
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405
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="plaintext">| H5D_FASTEST_RANK | The MPI rank with smallest time spent in H5D I/O</span>
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="plaintext">| H5D_FASTEST_RANK_BYTES | The number of bytes transferred by the rank with smallest time spent in H5D I/O</span>
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="plaintext">| H5D_SLOWEST_RANK | The MPI rank with largest time spent in H5D I/O</span>
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="plaintext">| H5D_SLOWEST_RANK_BYTES | The number of bytes transferred by the rank with the largest time spent in H5D I/O</span>
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="plaintext">| H5D_F_*_START_TIMESTAMP | Timestamp that the first H5D open/read/write/close operation began</span>
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="plaintext">| H5D_F_*_END_TIMESTAMP | Timestamp that the last H5D open/read/write/close operation ended</span>
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="plaintext">| H5D_F_READ_TIME | Cumulative time spent reading at H5D level</span>
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="plaintext">| H5D_F_WRITE_TIME | Cumulative time spent writing at H5D level</span>
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="plaintext">| H5D_F_META_TIME | Cumulative time spent in open/close/flush at H5D level</span>
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="plaintext">| H5D_F_MAX_READ_TIME | Duration of the slowest individual H5D read operation</span>
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="plaintext">| H5D_F_MAX_WRITE_TIME | Duration of the slowest individual H5D write operation</span>
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="plaintext">| H5D_F_FASTEST_RANK_TIME | The time of the rank which had the smallest amount of time spent in H5D I/O (cumulative read, write, and meta times)</span>
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="plaintext">| H5D_F_SLOWEST_RANK_TIME | The time of the rank which had the largest amount of time spent in H5D I/O</span>
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="plaintext">| H5D_F_VARIANCE_RANK_TIME | The population variance for H5D I/O time of all the ranks</span>
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="plaintext">| H5D_F_VARIANCE_RANK_BYTES | The population variance for bytes transferred of all the ranks at H5D level</span>
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="plaintext">|====</span>
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="plaintext">.PnetCDF module</span>
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<pre style="margin: 0;"> <span id="LC423" class="line" lang="plaintext">.PnetCDF module</span>
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<pre style="margin: 0;"> <span id="LC424" class="line" lang="plaintext">[cols="40%,60%",options="header"]</span>
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<pre style="margin: 0;"> <span id="LC425" class="line" lang="plaintext">|====</span>
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