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<h3>
Shane Snyder pushed to branch master
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/0750b7472043fb7356e524568ca67ea0efcd1fab">0750b747</a></strong>
<div>
<span>by Philip Carns</span>
<i>at 2020-03-27T10:04:24-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">explicitly link darshan when dynamically linking
- for some platforms (particularly the Cray Programming Environment)
this is sufficient to enable instrumentation on dynamically-linked
executables with the current version of Darshan
</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/7715697e435be5acdfdf0b4973bb4c62bcaa383c">7715697e</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2020-03-27T10:04:24-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'carns/dev-dyn-link-updates' into 'master'
revise dynamic linking strategy
See merge request darshan/darshan!41</pre>
</li>
</ul>
<h4>28 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#90014b3f60ebaaefa5bb064fa97598399709873f">
darshan-runtime/Makefile.in
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<li class="file-stats">
<a href="#fd68d1e1ce6723281126e7dd4196d7ab72adcc5d">
darshan-runtime/configure
</a>
</li>
<li class="file-stats">
<a href="#d568bf870ab3f1dae63146414b75cf9481a73076">
darshan-runtime/configure.in
</a>
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<li class="file-stats">
<a href="#68dfbc01eca18ead9b2d93f7ae47e2119044a92f">
darshan-runtime/darshan-config.in
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<li class="file-stats">
<a href="#150a474b393417f25451d74da4935074cc1d914d">
darshan-runtime/darshan-gen-cc.pl.in
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<li class="file-stats">
<a href="#d253284d2466fb37f0a5b02e23e4f3246acceacb">
darshan-runtime/darshan-gen-cxx.pl.in
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<li class="file-stats">
<a href="#9765bbdc8a4f2dfdddea193785c9cbcbe699d669">
darshan-runtime/darshan-gen-fortran.pl.in
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<a href="#c1f1275094e9957965ea40cf5852335b4164fd05">
darshan-runtime/doc/darshan-runtime.txt
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<a href="#41ff3c0222ed422ba7aec7f2c85217f75d7a5d59">
darshan-runtime/lib/pkgconfig/darshan-runtime.pc.in
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darshan-runtime/maint/generate-bg-compilers.sh
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darshan-runtime/maint/generate-bgq-compilers.sh
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darshan-runtime/maint/install-eureka.sh
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darshan-runtime/maint/install-gadzooks.sh
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darshan-runtime/maint/install-intrepid.sh
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darshan-runtime/maint/upgrade-eureka.sh
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darshan-runtime/maint/upgrade-gadzooks.sh
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darshan-runtime/share/mpi-profile/darshan-bg-cxx.conf.in
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darshan-runtime/share/mpi-profile/darshan-bg-f.conf.in
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darshan-runtime/share/mpi-profile/darshan-cc-static.conf.in
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darshan-runtime/share/mpi-profile/darshan-cc.conf.in
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darshan-runtime/share/mpi-profile/darshan-cxx-static.conf.in
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darshan-runtime/share/mpi-profile/darshan-cxx.conf.in
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darshan-runtime/share/mpi-profile/darshan-f-static.conf.in
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<li class="file-stats">
<a href="#782c4b0ba4602576f400f7d1320feaa8f3e0c375">
darshan-runtime/share/mpi-profile/darshan-f.conf.in
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</ul>
<h4>Changes:</h4>
<li id="90014b3f60ebaaefa5bb064fa97598399709873f">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#90014b3f60ebaaefa5bb064fa97598399709873f"><strong>darshan-runtime/Makefile.in</strong></a>
<hr>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -242,9 +242,9 @@ endif</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
242
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<td class="diff-line-num new_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
242
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC242" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-m</span> 755 share/mpi-profile/darshan-cc.conf <span class="nv" style="color: #008080;">$(DESTDIR)$(datarootdir)</span>/mpi-profile/darshan-cc.conf</span>
</pre>
</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
243
</td>
<td class="diff-line-num new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
243
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC243" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-m</span> 755 share/mpi-profile/darshan-cxx.conf <span class="nv" style="color: #008080;">$(DESTDIR)$(datarootdir)</span>/mpi-profile/darshan-cxx.conf</span>
</pre>
</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
244
</td>
<td class="diff-line-num new_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
244
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC244" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-m</span> 755 share/mpi-profile/darshan-f.conf <span class="nv" style="color: #008080;">$(DESTDIR)$(datarootdir)</span>/mpi-profile/darshan-f.conf</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
245
</td>
<td class="diff-line-num new_line old" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC245" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-m</span> 755 share/mpi-profile/darshan-<span class="idiff left">bg-cc.conf </span><span class="nv" style="color: #008080;"><span class="idiff">$(DESTDIR)$(datarootdir)</span></span><span class="idiff right">/mpi-profile/darshan-bg-c</span>c.conf</span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
246
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<td class="diff-line-num new_line old" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC246" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-m</span> 755 share/mpi-profile/darshan-<span class="idiff left">bg-cxx.conf </span><span class="nv" style="color: #008080;"><span class="idiff">$(DESTDIR)$(datarootdir)</span></span><span class="idiff right">/mpi-profile/darshan-bg-cxx</span>.conf</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
247
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<td class="diff-line-num new_line old" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC247" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-m</span> 755 share/mpi-profile/darshan-<span class="idiff left">bg-f.conf </span><span class="nv" style="color: #008080;"><span class="idiff">$(DESTDIR)$(datarootdir)</span></span><span class="idiff right">/mpi-profile/darshan-bg-f</span>.conf</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
245
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC245" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-m</span> 755 share/mpi-profile/darshan-<span class="idiff left">cc-static.conf </span><span class="nv" style="color: #008080;"><span class="idiff">$(DESTDIR)$(datarootdir)</span></span><span class="idiff right">/mpi-profile/darshan-cc-stati</span>c.conf</span>
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<td class="diff-line-num new old_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC246" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-m</span> 755 share/mpi-profile/darshan-<span class="idiff left">cxx-static.conf </span><span class="nv" style="color: #008080;"><span class="idiff">$(DESTDIR)$(datarootdir)</span></span><span class="idiff right">/mpi-profile/darshan-cxx-static</span>.conf</span>
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<td class="diff-line-num new old_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
247
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC247" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-m</span> 755 share/mpi-profile/darshan-<span class="idiff left">f-static.conf </span><span class="nv" style="color: #008080;"><span class="idiff">$(DESTDIR)$(datarootdir)</span></span><span class="idiff right">/mpi-profile/darshan-f-static</span>.conf</span>
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<td class="diff-line-num old_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
248
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<td class="diff-line-num new_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-d</span> <span class="nv" style="color: #008080;">$(DESTDIR)$(datarootdir)</span>/ld-opts</span>
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<td class="diff-line-num old_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="make"> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-m</span> 644 share/ld-opts/darshan-base-ld-opts <span class="nv" style="color: #008080;">$(DESTDIR)$(datarootdir)</span>/ld-opts/darshan-base-ld-opts</span>
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<td class="diff-line-num old_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
250
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<td class="diff-line-num new_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="make"><span class="k" style="font-weight: 600;">ifdef</span> <span class="nv" style="color: #008080;">BUILD_POSIX_MODULE</span></span>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#fd68d1e1ce6723281126e7dd4196d7ab72adcc5d"><strong>darshan-runtime/configure</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -679,6 +679,7 @@ infodir</td>
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679
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679
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<pre style="margin: 0;"> <span id="LC679" class="line" lang="shell"><span class="s1" style="color: #d14;">docdir</span></span>
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680
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680
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<pre style="margin: 0;"> <span id="LC680" class="line" lang="shell"><span class="s1" style="color: #d14;">oldincludedir</span></span>
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681
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681
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<pre style="margin: 0;"> <span id="LC681" class="line" lang="shell"><span class="s1" style="color: #d14;">includedir</span></span>
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682
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<pre style="margin: 0;">+<span id="LC682" class="line" lang="shell"><span class="s1" style="color: #d14;">runstatedir</span></span>
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683
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<pre style="margin: 0;"> <span id="LC683" class="line" lang="shell"><span class="s1" style="color: #d14;">localstatedir</span></span>
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684
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<pre style="margin: 0;"> <span id="LC684" class="line" lang="shell"><span class="s1" style="color: #d14;">sharedstatedir</span></span>
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685
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<pre style="margin: 0;"> <span id="LC685" class="line" lang="shell"><span class="s1" style="color: #d14;">sysconfdir</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="774" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -774,6 +775,7 @@ datadir='${datarootdir}'</td>
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774
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<pre style="margin: 0;"> <span id="LC775" class="line" lang="shell"><span class="nv" style="color: #008080;">sysconfdir</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'${prefix}/etc'</span></span>
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775
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776
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<pre style="margin: 0;"> <span id="LC776" class="line" lang="shell"><span class="nv" style="color: #008080;">sharedstatedir</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'${prefix}/com'</span></span>
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777
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<pre style="margin: 0;"> <span id="LC777" class="line" lang="shell"><span class="nv" style="color: #008080;">localstatedir</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'${prefix}/var'</span></span>
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778
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<pre style="margin: 0;">+<span id="LC778" class="line" lang="shell"><span class="nv" style="color: #008080;">runstatedir</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'${localstatedir}/run'</span></span>
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<pre style="margin: 0;"> <span id="LC779" class="line" lang="shell"><span class="nv" style="color: #008080;">includedir</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'${prefix}/include'</span></span>
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<pre style="margin: 0;"> <span id="LC780" class="line" lang="shell"><span class="nv" style="color: #008080;">oldincludedir</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'/usr/include'</span></span>
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781
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<pre style="margin: 0;"> <span id="LC781" class="line" lang="shell"><span class="nv" style="color: #008080;">docdir</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'${datarootdir}/doc/${PACKAGE_TARNAME}'</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1026" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1028" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1026,6 +1028,15 @@ do</td>
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1026
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1028
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<pre style="margin: 0;"> <span id="LC1028" class="line" lang="shell"> <span class="p">|</span> <span class="nt" style="color: #000080;">-silent</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--silent</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--silen</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sile</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sil</span><span class="p">)</span></span>
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1027
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1029
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<pre style="margin: 0;"> <span id="LC1029" class="line" lang="shell"> <span class="nv" style="color: #008080;">silent</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">yes</span> <span class="p">;;</span></span>
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1028
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1030
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<pre style="margin: 0;"> <span id="LC1030" class="line" lang="shell"></span>
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1031
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<pre style="margin: 0;">+<span id="LC1031" class="line" lang="shell"> <span class="nt" style="color: #000080;">-runstatedir</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runstatedir</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runstatedi</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runstated</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1032" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1032
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<pre style="margin: 0;">+<span id="LC1032" class="line" lang="shell"> <span class="p">|</span> <span class="nt" style="color: #000080;">--runstate</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runstat</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runsta</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runst</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runs</span> <span class="se" style="color: #d14;">\</span></span>
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1033
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<pre style="margin: 0;">+<span id="LC1033" class="line" lang="shell"> <span class="p">|</span> <span class="nt" style="color: #000080;">--run</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--ru</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--r</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1034" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1034
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<pre style="margin: 0;">+<span id="LC1034" class="line" lang="shell"> <span class="nv" style="color: #008080;">ac_prev</span><span class="o" style="font-weight: 600;">=</span>runstatedir <span class="p">;;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1035" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1035
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<pre style="margin: 0;">+<span id="LC1035" class="line" lang="shell"> <span class="nt" style="color: #000080;">-runstatedir</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runstatedir</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runstatedi</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runstated</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1036" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1036
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<pre style="margin: 0;">+<span id="LC1036" class="line" lang="shell"> <span class="p">|</span> <span class="nt" style="color: #000080;">--runstate</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runstat</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runsta</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runst</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--runs</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1037" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1037
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<pre style="margin: 0;">+<span id="LC1037" class="line" lang="shell"> <span class="p">|</span> <span class="nt" style="color: #000080;">--run</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--ru</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--r</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1038" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1038
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<pre style="margin: 0;">+<span id="LC1038" class="line" lang="shell"> <span class="nv" style="color: #008080;">runstatedir</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$ac_optarg</span> <span class="p">;;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1029" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1039
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<pre style="margin: 0;">+<span id="LC1039" class="line" lang="shell"></span>
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1029
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1040
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<pre style="margin: 0;"> <span id="LC1040" class="line" lang="shell"> <span class="nt" style="color: #000080;">-sbindir</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sbindir</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sbindi</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sbind</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sbin</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sbi</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sb</span><span class="p">)</span></span>
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1030
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<td class="diff-line-num new_line" data-linenumber="1041" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1041
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<pre style="margin: 0;"> <span id="LC1041" class="line" lang="shell"> <span class="nv" style="color: #008080;">ac_prev</span><span class="o" style="font-weight: 600;">=</span>sbindir <span class="p">;;</span></span>
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<td class="diff-line-num old_line" data-linenumber="1031" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1031
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<td class="diff-line-num new_line" data-linenumber="1042" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1042
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<pre style="margin: 0;"> <span id="LC1042" class="line" lang="shell"> <span class="nt" style="color: #000080;">-sbindir</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sbindir</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sbindi</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sbind</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="p">|</span> <span class="nt" style="color: #000080;">--sbin</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">*</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1163,7 +1174,7 @@ fi</td>
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<td class="diff-line-num old_line" data-linenumber="1163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1163
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<td class="diff-line-num new_line" data-linenumber="1174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1174
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<pre style="margin: 0;"> <span id="LC1174" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>ac_var <span class="k" style="font-weight: 600;">in </span>exec_prefix prefix bindir sbindir libexecdir datarootdir <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num old_line" data-linenumber="1164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1164
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<td class="diff-line-num new_line" data-linenumber="1175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1175
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<pre style="margin: 0;"> <span id="LC1175" class="line" lang="shell"> datadir sysconfdir sharedstatedir localstatedir includedir <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num old_line" data-linenumber="1165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1165
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<td class="diff-line-num new_line" data-linenumber="1176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1176
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<pre style="margin: 0;"> <span id="LC1176" class="line" lang="shell"> oldincludedir docdir infodir htmldir dvidir pdfdir psdir <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1166
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<td class="diff-line-num new_line old" data-linenumber="1177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1166" class="line" lang="shell"> libdir localedir mandir</span>
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<td class="diff-line-num new old_line" data-linenumber="1167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1177
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<pre style="margin: 0;">+<span id="LC1177" class="line" lang="shell"> libdir localedir mandir<span class="idiff left right"> runstatedir</span></span>
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1167
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<td class="diff-line-num new_line" data-linenumber="1178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1178
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<pre style="margin: 0;"> <span id="LC1178" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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<td class="diff-line-num old_line" data-linenumber="1168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1168
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<td class="diff-line-num new_line" data-linenumber="1179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1179
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<pre style="margin: 0;"> <span id="LC1179" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">eval </span><span class="nv" style="color: #008080;">ac_val</span><span class="o" style="font-weight: 600;">=</span><span class="se" style="color: #d14;">\$</span><span class="nv" style="color: #008080;">$ac_var</span></span>
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<td class="diff-line-num old_line" data-linenumber="1169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1169
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1180
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<pre style="margin: 0;"> <span id="LC1180" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Remove trailing slashes.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1316,6 +1327,7 @@ Fine tuning of the installation directories:</td>
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1316
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<td class="diff-line-num new_line" data-linenumber="1327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1327
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<pre style="margin: 0;"> <span id="LC1327" class="line" lang="shell"><span class="sh" style="color: #d14;"> --sysconfdir=DIR read-only single-machine data [PREFIX/etc]</span></span>
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<td class="diff-line-num old_line" data-linenumber="1317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1317
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<td class="diff-line-num new_line" data-linenumber="1328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1328
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<pre style="margin: 0;"> <span id="LC1328" class="line" lang="shell"><span class="sh" style="color: #d14;"> --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com]</span></span>
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<td class="diff-line-num old_line" data-linenumber="1318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1318
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<td class="diff-line-num new_line" data-linenumber="1329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1329
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<pre style="margin: 0;"> <span id="LC1329" class="line" lang="shell"><span class="sh" style="color: #d14;"> --localstatedir=DIR modifiable single-machine data [PREFIX/var]</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1330" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1330
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<pre style="margin: 0;">+<span id="LC1330" class="line" lang="shell"><span class="sh" style="color: #d14;"> --runstatedir=DIR modifiable per-process data [LOCALSTATEDIR/run]</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1319
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<td class="diff-line-num new_line" data-linenumber="1331" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1331
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<pre style="margin: 0;"> <span id="LC1331" class="line" lang="shell"><span class="sh" style="color: #d14;"> --libdir=DIR object code libraries [EPREFIX/lib]</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1320
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<td class="diff-line-num new_line" data-linenumber="1332" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1332
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<pre style="margin: 0;"> <span id="LC1332" class="line" lang="shell"><span class="sh" style="color: #d14;"> --includedir=DIR C header files [PREFIX/include]</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1321
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<td class="diff-line-num new_line" data-linenumber="1333" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1333
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<pre style="margin: 0;"> <span id="LC1333" class="line" lang="shell"><span class="sh" style="color: #d14;"> --oldincludedir=DIR C header files for non-gcc [/usr/include]</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4878" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4890" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4878,7 +4890,7 @@ DARSHAN_VERSION="3.2.0-pre1"</td>
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<td class="diff-line-num old_line" data-linenumber="4878" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4878
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4890
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<pre style="margin: 0;"> <span id="LC4890" class="line" lang="shell"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4879" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4879
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<td class="diff-line-num new_line" data-linenumber="4891" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4891
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<pre style="margin: 0;"> <span id="LC4891" class="line" lang="shell"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4880" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4880
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<td class="diff-line-num new_line" data-linenumber="4892" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4892
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<pre style="margin: 0;"> <span id="LC4892" class="line" lang="shell"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="4881" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
4881
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<td class="diff-line-num new_line old" data-linenumber="4893" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4881" class="line" lang="shell"><span class="nv" style="color: #008080;">ac_config_files</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$ac_config_files</span><span class="s2" style="color: #d14;"> Makefile darshan-mk-log-dirs.pl darshan-gen-cc.pl darshan-gen-cxx.pl darshan-gen-fortran.pl darshan-config share/craype-1.x/darshan-module share/craype-2.x/darshan-module lib/pkgconfig/darshan-runtime.pc share/mpi-profile/darshan-cc.conf share/mpi-profile/darshan-cxx.conf share/mpi-profile/darshan-f.conf share/mpi-profile/darshan-<span class="idiff left right">bg-cc.conf share/mpi-profile/darshan-bg-cxx.conf share/mpi-profile/darshan-bg-f</span>.conf share/ld-opts/darshan-base-ld-opts"</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="4882" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="4893" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4893
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<pre style="margin: 0;">+<span id="LC4893" class="line" lang="shell"><span class="nv" style="color: #008080;">ac_config_files</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$ac_config_files</span><span class="s2" style="color: #d14;"> Makefile darshan-mk-log-dirs.pl darshan-gen-cc.pl darshan-gen-cxx.pl darshan-gen-fortran.pl darshan-config share/craype-1.x/darshan-module share/craype-2.x/darshan-module lib/pkgconfig/darshan-runtime.pc share/mpi-profile/darshan-cc.conf share/mpi-profile/darshan-cxx.conf share/mpi-profile/darshan-f.conf share/mpi-profile/darshan-<span class="idiff left right">cc-static.conf share/mpi-profile/darshan-cxx-static.conf share/mpi-profile/darshan-f-static</span>.conf share/ld-opts/darshan-base-ld-opts"</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4882" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4882
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<td class="diff-line-num new_line" data-linenumber="4894" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4894
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<pre style="margin: 0;"> <span id="LC4894" class="line" lang="shell"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4883" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4883
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<td class="diff-line-num new_line" data-linenumber="4895" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4895
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<pre style="margin: 0;"> <span id="LC4895" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;">></span>confcache <span class="o" style="font-weight: 600;"><<</span><span class="sh" style="color: #d14;">\</span><span class="no" style="color: #008080;">_ACEOF</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4884" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4884
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<td class="diff-line-num new_line" data-linenumber="4896" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4896
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<pre style="margin: 0;"> <span id="LC4896" class="line" lang="shell"><span class="sh" style="color: #d14;"># This file is a shell script that caches the results of configure</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="5585" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="5597" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5585,9 +5597,9 @@ do</td>
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5585
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<td class="diff-line-num new_line" data-linenumber="5597" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5597
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<pre style="margin: 0;"> <span id="LC5597" class="line" lang="shell"><span class="sh" style="color: #d14;"> "share/mpi-profile/darshan-cc.conf") CONFIG_FILES="</span><span class="nv" style="color: #008080;">$CONFIG_FILES</span><span class="sh" style="color: #d14;"> share/mpi-profile/darshan-cc.conf" ;;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="5586" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5586
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<td class="diff-line-num new_line" data-linenumber="5598" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5598
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<pre style="margin: 0;"> <span id="LC5598" class="line" lang="shell"><span class="sh" style="color: #d14;"> "share/mpi-profile/darshan-cxx.conf") CONFIG_FILES="</span><span class="nv" style="color: #008080;">$CONFIG_FILES</span><span class="sh" style="color: #d14;"> share/mpi-profile/darshan-cxx.conf" ;;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="5587" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5587
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<td class="diff-line-num new_line" data-linenumber="5599" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5599
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<pre style="margin: 0;"> <span id="LC5599" class="line" lang="shell"><span class="sh" style="color: #d14;"> "share/mpi-profile/darshan-f.conf") CONFIG_FILES="</span><span class="nv" style="color: #008080;">$CONFIG_FILES</span><span class="sh" style="color: #d14;"> share/mpi-profile/darshan-f.conf" ;;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="5588" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
5588
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<td class="diff-line-num new_line old" data-linenumber="5600" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC5588" class="line" lang="shell"><span class="sh" style="color: #d14;"> "share/mpi-profile/darshan-<span class="idiff left">bg-cc.conf") CONFIG_FILES="</span></span><span class="nv" style="color: #008080;"><span class="idiff">$CONFIG_FILES</span></span><span class="sh" style="color: #d14;"><span class="idiff right"> share/mpi-profile/darshan-bg-c</span>c.conf" ;;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="5589" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
5589
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<td class="diff-line-num new_line old" data-linenumber="5600" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC5589" class="line" lang="shell"><span class="sh" style="color: #d14;"> "share/mpi-profile/darshan-<span class="idiff left">bg-cxx.conf") CONFIG_FILES="</span></span><span class="nv" style="color: #008080;"><span class="idiff">$CONFIG_FILES</span></span><span class="sh" style="color: #d14;"><span class="idiff right"> share/mpi-profile/darshan-bg-cxx</span>.conf" ;;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="5590" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
5590
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<td class="diff-line-num new_line old" data-linenumber="5600" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC5590" class="line" lang="shell"><span class="sh" style="color: #d14;"> "share/mpi-profile/darshan-<span class="idiff left">bg-f.conf") CONFIG_FILES="</span></span><span class="nv" style="color: #008080;"><span class="idiff">$CONFIG_FILES</span></span><span class="sh" style="color: #d14;"><span class="idiff right"> share/mpi-profile/darshan-bg-f</span>.conf" ;;</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC5600" class="line" lang="shell"><span class="sh" style="color: #d14;"> "share/mpi-profile/darshan-<span class="idiff left">cc-static.conf") CONFIG_FILES="</span></span><span class="nv" style="color: #008080;"><span class="idiff">$CONFIG_FILES</span></span><span class="sh" style="color: #d14;"><span class="idiff right"> share/mpi-profile/darshan-cc-stati</span>c.conf" ;;</span></span>
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5601
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<pre style="margin: 0;">+<span id="LC5601" class="line" lang="shell"><span class="sh" style="color: #d14;"> "share/mpi-profile/darshan-<span class="idiff left">cxx-static.conf") CONFIG_FILES="</span></span><span class="nv" style="color: #008080;"><span class="idiff">$CONFIG_FILES</span></span><span class="sh" style="color: #d14;"><span class="idiff right"> share/mpi-profile/darshan-cxx-static</span>.conf" ;;</span></span>
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5602
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<pre style="margin: 0;">+<span id="LC5602" class="line" lang="shell"><span class="sh" style="color: #d14;"> "share/mpi-profile/darshan-<span class="idiff left">f-static.conf") CONFIG_FILES="</span></span><span class="nv" style="color: #008080;"><span class="idiff">$CONFIG_FILES</span></span><span class="sh" style="color: #d14;"><span class="idiff right"> share/mpi-profile/darshan-f-static</span>.conf" ;;</span></span>
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5603
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<pre style="margin: 0;"> <span id="LC5603" class="line" lang="shell"><span class="sh" style="color: #d14;"> "share/ld-opts/darshan-base-ld-opts") CONFIG_FILES="</span><span class="nv" style="color: #008080;">$CONFIG_FILES</span><span class="sh" style="color: #d14;"> share/ld-opts/darshan-base-ld-opts" ;;</span></span>
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5604
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<pre style="margin: 0;"> <span id="LC5604" class="line" lang="shell"></span>
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5593
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5605
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<pre style="margin: 0;"> <span id="LC5605" class="line" lang="shell"><span class="sh" style="color: #d14;"> *) as_fn_error </span><span class="nv" style="color: #008080;">$?</span><span class="sh" style="color: #d14;"> "invalid argument: </span><span class="se" style="color: #d14;">\`</span><span class="nv" style="color: #008080;">$ac_config_target</span><span class="sh" style="color: #d14;">'" "</span><span class="nv" style="color: #008080;">$LINENO</span><span class="sh" style="color: #d14;">" 5;;</span></span>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#d568bf870ab3f1dae63146414b75cf9481a73076"><strong>darshan-runtime/configure.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -531,9 +531,9 @@ lib/pkgconfig/darshan-runtime.pc</td>
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<pre style="margin: 0;"> <span id="LC531" class="line" lang="plaintext">share/mpi-profile/darshan-cc.conf</span>
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532
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<pre style="margin: 0;"> <span id="LC532" class="line" lang="plaintext">share/mpi-profile/darshan-cxx.conf</span>
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<pre style="margin: 0;"> <span id="LC533" class="line" lang="plaintext">share/mpi-profile/darshan-f.conf</span>
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<pre style="margin: 0;">-<span id="LC534" class="line" lang="plaintext">share/mpi-profile/darshan-<span class="idiff left right">bg-c</span>c.conf</span>
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<pre style="margin: 0;">-<span id="LC535" class="line" lang="plaintext">share/mpi-profile/darshan-<span class="idiff left right">bg-cxx</span>.conf</span>
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<pre style="margin: 0;">-<span id="LC536" class="line" lang="plaintext">share/mpi-profile/darshan-<span class="idiff left right">bg-f</span>.conf</span>
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="plaintext">share/mpi-profile/darshan-<span class="idiff left right">cc-stati</span>c.conf</span>
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="plaintext">share/mpi-profile/darshan-<span class="idiff left right">cxx-static</span>.conf</span>
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="plaintext">share/mpi-profile/darshan-<span class="idiff left right">f-static</span>.conf</span>
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<pre style="margin: 0;"> <span id="LC537" class="line" lang="plaintext">share/ld-opts/darshan-base-ld-opts</span>
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<pre style="margin: 0;"> <span id="LC538" class="line" lang="plaintext">)</span>
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<pre style="margin: 0;"> <span id="LC539" class="line" lang="plaintext"></span>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#68dfbc01eca18ead9b2d93f7ae47e2119044a92f"><strong>darshan-runtime/darshan-config.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,17 +5,23 @@ DARSHAN_SHARE_PATH="@darshan_share_path@"</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="nv" style="color: #008080;">DARSHAN_LD_FLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"@LDFLAGS@"</span></span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"></span>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># NOTE:</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># - we deliberately list libdarshan twice in the link command<span class="idiff left right">. The</span></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># <span class="idiff left right">first is necessary to correctly use the MPI profiling interface. T</span>he</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># <span class="idiff left right">final one is necessary to give the linker a change to resolve indirect</span></span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># <span class="idiff left right">dependencies on PnetCDF and HDF5 symbols (if the app used a library which </span></span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># in turn used one of those HLLs).</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># - we deliberately list libdarshan twice in the link command<span class="idiff left right"> when</span></span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># <span class="idiff left right">statically linking. The first sets symbol wrapping options early in t</span>he</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># <span class="idiff left right">link line. The final one is necessary to give the linker a change to</span></span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># <span class="idiff left right">resolve indirect dependencies on PnetCDF and HDF5 symbols (if the</span></span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># <span class="idiff left right">app used a library which </span>in turn used one of those HLLs).</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="nv" style="color: #008080;">PRE_LD_FLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-L</span><span class="nv" style="color: #008080;">$DARSHAN_LIB_PATH</span><span class="s2" style="color: #d14;"> </span><span class="nv" style="color: #008080;">$DARSHAN_LD_FLAGS</span><span class="s2" style="color: #d14;"> -ldarshan -lz -Wl,@</span><span class="nv" style="color: #008080;">$DARSHAN_SHARE_PATH</span><span class="s2" style="color: #d14;">/ld-opts/darshan-base-ld-opts"</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="nv" style="color: #008080;">POST_LD_FLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-L</span><span class="nv" style="color: #008080;">$DARSHAN_LIB_PATH</span><span class="s2" style="color: #d14;"> -Wl,--start-group -ldarshan -ldarshan-stubs -Wl,--end-group -lz -lrt -lpthread"</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># NOTE:</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># - when dynamic linking there is no need for wrapping options, we simply</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># need to get the darshan symbol definitions early enough in the link</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># order. We also set no-as-needed for linkers that may not identify</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"><span class="nv" style="color: #008080;">DYN_LD_FLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-L</span><span class="nv" style="color: #008080;">$DARSHAN_LIB_PATH</span><span class="s2" style="color: #d14;"> </span><span class="nv" style="color: #008080;">$DARSHAN_LD_FLAGS</span><span class="s2" style="color: #d14;"> -Wl,-rpath=</span><span class="nv" style="color: #008080;">$DARSHAN_LIB_PATH</span><span class="s2" style="color: #d14;"> </span><span class="nv" style="color: #008080;">$DARSHAN_LD_FLAGS</span><span class="s2" style="color: #d14;"> -Wl,-no-as-needed -ldarshan"</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="shell"><span class="nv" style="color: #008080;">usage</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"><span class="s2" style="color: #d14;">Usage: darshan-config [--pre-ld-flags] [--post-ld-flags]"</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"><span class="s2" style="color: #d14;">Usage: darshan-config [--pre-ld-flags] [--post-ld-flags]<span class="idiff left right"> [--dyn-ld-flags]</span>"</span></span>
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19
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="shell"></span>
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20
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="shell"><span class="k" style="font-weight: 600;">if </span><span class="nb" style="color: #0086b3;">test</span> <span class="nv" style="color: #008080;">$# </span><span class="nt" style="color: #000080;">-eq</span> 0<span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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21
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">usage</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 1>&2</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,6 +41,9 @@ while test $# -gt 0; do</td>
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35
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="shell"> <span class="nt" style="color: #000080;">--post-ld-flags</span><span class="p">)</span></span>
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36
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42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$POST_LD_FLAGS</span></span>
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37
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="shell"> <span class="p">;;</span></span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="shell"> <span class="nt" style="color: #000080;">--dyn-ld-flags</span><span class="p">)</span></span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$DYN_LD_FLAGS</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="shell"> <span class="p">;;</span></span>
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38
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47
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="shell"> <span class="k" style="font-weight: 600;">*</span><span class="p">)</span></span>
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39
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48
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">usage</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 1>&2</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">exit </span>1</span>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#150a474b393417f25451d74da4935074cc1d914d"><strong>darshan-runtime/darshan-gen-cc.pl.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -83,6 +83,7 @@ $CC_from_link=$1;</td>
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83
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83
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="perl"><span class="nv" style="color: #008080;">$link_cmd_prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$2</span><span class="p">;</span></span>
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84
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84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="perl"><span class="nv" style="color: #008080;">$base_link_cmd_suffix</span><span class="o" style="font-weight: 600;">=</span><span class="p">"</span><span class="se" style="color: #d14;">\"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">$</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">{allargs</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">[</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">@</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">]</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">}</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> $4</span><span class="p">";</span></span>
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85
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85
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="perl"><span class="nv" style="color: #008080;">$link_cmd_suffix</span><span class="o" style="font-weight: 600;">=</span><span class="p">"</span><span class="se" style="color: #d14;">\"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">$</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">{newallargs</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">[</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">@</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">]</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">}</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> `</span><span class="si" style="color: #d14;">$PREFIX</span><span class="s2" style="color: #d14;">/bin/darshan-config --pre-ld-flags` $4 `</span><span class="si" style="color: #d14;">$PREFIX</span><span class="s2" style="color: #d14;">/bin/darshan-config --post-ld-flags`</span><span class="p">";</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="perl"><span class="nv" style="color: #008080;">$dyn_link_cmd_suffix</span><span class="o" style="font-weight: 600;">=</span><span class="p">"</span><span class="se" style="color: #d14;">\"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">$</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">{newallargs</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">[</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">@</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">]</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">}</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> `</span><span class="si" style="color: #d14;">$PREFIX</span><span class="s2" style="color: #d14;">/bin/darshan-config --dyn-ld-flags` $4</span><span class="p">";</span></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="perl"></span>
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88
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># repeat the above step for the compilation command line</span></span>
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88
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="perl"><span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="p">(</span><span class="nv" style="color: #008080;">$compile_cmd</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/(\S+)(.+)(-c foo.c)\s+(.*)/</span><span class="p">))</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -198,13 +199,6 @@ if [ "$linking" = yes ] ; then</td>
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198
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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199
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="perl"><span class="s" style="color: #d14;">EOF</span></span>
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="nv" style="color: #008080;">OUTPUT</span><span class="s" style="color: #d14;"><<"EOF";</span></span>
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201
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="perl"><span class="s" style="color: #d14;"> # Trial run to generate a symbol listing. We only enable Darshan if:</span></span>
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202
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="perl"><span class="s" style="color: #d14;"> # a) MPI is used</span></span>
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203
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="perl"><span class="s" style="color: #d14;"> # b) PMPI is _not_ used</span></span>
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204
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="perl"><span class="s" style="color: #d14;"> #</span></span>
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205
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="perl"><span class="s" style="color: #d14;"> # We want Darshan to get out of the way if the user is doing a runtime</span></span>
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206
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="perl"><span class="s" style="color: #d14;"> # test in configure (in which case MPI objects break the executable) or</span></span>
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207
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="perl"><span class="s" style="color: #d14;"> # if the user is using another PMPI based tool</span></span>
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208
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="perl"></span>
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209
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="perl"><span class="s" style="color: #d14;"> # if allargs includes any libraries, then we need to get </span></span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="perl"><span class="s" style="color: #d14;"> # -ldarshan in there first</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -243,6 +237,14 @@ print OUTPUT<<"EOF";</td>
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237
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="perl"><span class="s" style="color: #d14;"> used_darshan=0</span></span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="perl"></span>
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240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="perl"><span class="s" style="color: #d14;"> # Perform a test link before the real link. This allows us to check</span></span>
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241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="perl"><span class="s" style="color: #d14;"> # for two things:</span></span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="perl"><span class="s" style="color: #d14;"> # 1) Are MPI symbols present? Technically Darshan should not harm</span></span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="perl"><span class="s" style="color: #d14;"> # non-MPI programs, but it may bring in unwanted dependencies or</span></span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="perl"><span class="s" style="color: #d14;"> # interfere with autoconf checks.</span></span>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="perl"><span class="s" style="color: #d14;"> # 2) Is this link command line going to produce a static or dynamic</span></span>
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246
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="perl"><span class="s" style="color: #d14;"> # linked executable? We will adjust Darshan link strategy accordingly.</span></span>
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247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="perl"></span>
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246
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="perl"><span class="s" style="color: #d14;"> # create a temporary file</span></span>
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247
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="perl"><span class="s" style="color: #d14;"> tmpfile=`mktemp`</span></span>
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248
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="perl"><span class="s" style="color: #d14;"> binfile=`mktemp`</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -261,31 +263,23 @@ print OUTPUT<<"EOF";</td>
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263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="perl"><span class="s" style="color: #d14;"> # is MPI in there?</span></span>
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="perl"><span class="s" style="color: #d14;"> grep MPI \$tmpfile >& /dev/null</span></span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_mpi=\$?</span></span>
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264
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="perl"><span class="s" style="color: #d14;"> # is PMPI being used for PMPI_File_open?</span></span>
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="perl"><span class="s" style="color: #d14;"> grep -E PMPI_File_open \$tmpfile | grep -v -E \\(mpich.*\\.a\\) |grep \\(PMPI >& /dev/null</span></span>
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_pmpi=\$?</span></span>
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="perl"><span class="s" style="color: #d14;"> rm \$tmpfile >& /dev/null</span></span>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="perl"><span class="s" style="color: #d14;"> # is MPI_Init a weak symbol?</span></span>
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="perl"><span class="s" style="color: #d14;"> # disable darshan if it is not</span></span>
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="perl"><span class="s" style="color: #d14;"> if [ -e \$binfile ];</span></span>
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="perl"><span class="s" style="color: #d14;"> then</span></span>
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="perl"><span class="s" style="color: #d14;"> nm \$binfile | grep -i "mpi_init" | grep -i "w" >& /dev/null</span></span>
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_weak=\$?</span></span>
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275
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="perl"><span class="s" style="color: #d14;"> else</span></span>
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276
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_weak=1</span></span>
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277
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="perl"><span class="s" style="color: #d14;"> # did the link options produce a dynamic executable?</span></span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="perl"><span class="s" style="color: #d14;"> ldd \$binfile >& /dev/null</span></span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_dyn=\$?</span></span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="perl"></span>
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271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="perl"><span class="s" style="color: #d14;"> rm \$tmpfile >& /dev/null</span></span>
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278
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="perl"><span class="s" style="color: #d14;"> rm \$binfile >& /dev/null</span></span>
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279
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273
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="perl"></span>
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280
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="perl"><span class="s" style="color: #d14;"> # disable darshan if the executable is not an MPI program <span class="idiff left right">(this featur</span>e</span></span>
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281
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="perl"><span class="s" style="color: #d14;"> # <span class="idiff left right">mainly allows runtime configure tests to work</span></span></span>
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282
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="perl"><span class="s" style="color: #d14;"> if [ \$rc_mpi -eq 0 ] ; then</span></span>
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283
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right"># disable darshan if something else is already using PMPI; we don't</span></span></span>
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284
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right"># want to cause any symbol conflicts</span></span></span>
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285
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">if [ \$rc_pmpi -ne 0 ] && [ \$compiler_check -eq 0 ] && [ \$rc_weak -eq 0 ]; then</span></span></span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="perl"><span class="s" style="color: #d14;"> # disable darshan if the executable is not an MPI program <span class="idiff left right">or we'v</span>e</span></span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="perl"><span class="s" style="color: #d14;"> # <span class="idiff left right">detected an incompatible compiler</span></span></span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="perl"><span class="s" style="color: #d14;"> if [ \$rc_mpi -eq 0 ] <span class="idiff left right">&& [ \$compiler_check -eq 0 ]</span>; then</span></span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">if [ \$rc_dyn -eq 0 ]; then</span></span></span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right"> \$Show \$CC $link_cmd_prefix $dyn_link_cmd_suffix</span></span></span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">else</span></span></span>
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286
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280
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="perl"><span class="s" style="color: #d14;"> \$Show \$CC $link_cmd_prefix $link_cmd_suffix</span></span>
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287
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="perl"><span class="s" style="color: #d14;"> used_darshan=1</span></span>
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288
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281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="perl"><span class="s" style="color: #d14;"> used_darshan=1</span></span>
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289
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283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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290
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284
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="perl"></span>
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291
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285
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="perl"><span class="s" style="color: #d14;"> # otherwise use the normal command line</span></span>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#d253284d2466fb37f0a5b02e23e4f3246acceacb"><strong>darshan-runtime/darshan-gen-cxx.pl.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -83,6 +83,7 @@ $CXX_from_link=$1;</td>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="perl"><span class="nv" style="color: #008080;">$link_cmd_prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$2</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="perl"><span class="nv" style="color: #008080;">$base_link_cmd_suffix</span><span class="o" style="font-weight: 600;">=</span><span class="p">"</span><span class="se" style="color: #d14;">\"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">$</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">{allargs</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">[</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">@</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">]</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">}</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> $4</span><span class="p">";</span></span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="perl"><span class="nv" style="color: #008080;">$link_cmd_suffix</span><span class="o" style="font-weight: 600;">=</span><span class="p">"</span><span class="se" style="color: #d14;">\"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">$</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">{newallargs</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">[</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">@</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">]</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">}</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> </span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="si" style="color: #d14;">$CXXMPICH</span><span class="s2" style="color: #d14;"> `</span><span class="si" style="color: #d14;">$PREFIX</span><span class="s2" style="color: #d14;">/bin/darshan-config --pre-ld-flags` $4 `</span><span class="si" style="color: #d14;">$PREFIX</span><span class="s2" style="color: #d14;">/bin/darshan-config --post-ld-flags`</span><span class="p">";</span></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="perl"><span class="nv" style="color: #008080;">$dyn_link_cmd_suffix</span><span class="o" style="font-weight: 600;">=</span><span class="p">"</span><span class="se" style="color: #d14;">\"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">$</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">{newallargs</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">[</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">@</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">]</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">}</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> </span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="si" style="color: #d14;">$CXXMPICH</span><span class="s2" style="color: #d14;"> `</span><span class="si" style="color: #d14;">$PREFIX</span><span class="s2" style="color: #d14;">/bin/darshan-config --dyn-ld-flags` $4</span><span class="p">";</span></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># repeat the above step for the compilation command line</span></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="perl"><span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="p">(</span><span class="nv" style="color: #008080;">$compile_cmd</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/(\S+)(.+)(-c foo.c)\s+(.*)/</span><span class="p">))</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -198,15 +199,8 @@ if [ "$linking" = yes ] ; then</td>
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198
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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200
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="perl"><span class="s" style="color: #d14;">EOF</span></span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="nv" style="color: #008080;">OUTPUT</span><span class="s" style="color: #d14;"><<"EOF";</span></span>
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="perl"><span class="s" style="color: #d14;"> # Trial run to generate a symbol listing. We only enable Darshan if:</span></span>
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="perl"><span class="s" style="color: #d14;"> # a) MPI is used</span></span>
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="perl"><span class="s" style="color: #d14;"> # b) PMPI is _not_ used</span></span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="perl"><span class="s" style="color: #d14;"> #</span></span>
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="perl"><span class="s" style="color: #d14;"> # We want Darshan to get out of the way if the user is doing a runtime</span></span>
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="perl"><span class="s" style="color: #d14;"> # test in configure (in which case MPI objects break the executable) or</span></span>
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="perl"><span class="s" style="color: #d14;"> # if the user is using another PMPI based tool</span></span>
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="perl"><span class="s" style="color: #d14;"> # if allargs includes any libraries, then we need to get </span></span>
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="perl"></span>
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="perl"><span class="s" style="color: #d14;"> # if allargs includes any libraries, then we need to get</span></span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="perl"><span class="s" style="color: #d14;"> # -ldarshan in there first</span></span>
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211
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="perl"><span class="s" style="color: #d14;"> argno=0;</span></span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="perl"><span class="s" style="color: #d14;"> once=0;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -244,6 +238,14 @@ print OUTPUT<<"EOF";</td>
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="perl"><span class="s" style="color: #d14;"> used_darshan=0</span></span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="perl"></span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="perl"><span class="s" style="color: #d14;"> # Perform a test link before the real link. This allows us to check</span></span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="perl"><span class="s" style="color: #d14;"> # for two things:</span></span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="perl"><span class="s" style="color: #d14;"> # 1) Are MPI symbols present? Technically Darshan should not harm</span></span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="perl"><span class="s" style="color: #d14;"> # non-MPI programs, but it may bring in unwanted dependencies or</span></span>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="perl"><span class="s" style="color: #d14;"> # interfere with autoconf checks.</span></span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="perl"><span class="s" style="color: #d14;"> # 2) Is this link command line going to produce a static or dynamic</span></span>
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247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="perl"><span class="s" style="color: #d14;"> # linked executable? We will adjust Darshan link strategy accordingly.</span></span>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="perl"><span class="s" style="color: #d14;"> # create a temporary file</span></span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="perl"><span class="s" style="color: #d14;"> tmpfile=`mktemp`</span></span>
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="perl"><span class="s" style="color: #d14;"> binfile=`mktemp`</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -263,9 +265,9 @@ print OUTPUT<<"EOF";</td>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="perl"><span class="s" style="color: #d14;"> grep MPI \$tmpfile >& /dev/null</span></span>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_mpi=\$?</span></span>
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="perl"><span class="s" style="color: #d14;"> # <span class="idiff left right">is PMPI being used for PMPI_File_open</span>?</span></span>
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">grep -E PMPI_File_open \$tmpfile | grep -v -E \\(mpich.*\\.a\\) |grep \\(PMPI</span> >& /dev/null</span></span>
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268
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_<span class="idiff left right">pmpi</span>=\$?</span></span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="perl"><span class="s" style="color: #d14;"> # <span class="idiff left right">did the link options produce a dynamic executable</span>?</span></span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">ldd \$binfile</span> >& /dev/null</span></span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_<span class="idiff left right">dyn</span>=\$?</span></span>
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269
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271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="perl"></span>
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270
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="perl"><span class="s" style="color: #d14;"> CXXMPICH=-lmpichcxx</span></span>
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271
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273
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="perl"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -288,27 +290,17 @@ print OUTPUT<<"EOF";</td>
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288
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290
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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289
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291
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="perl"></span>
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290
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292
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="perl"><span class="s" style="color: #d14;"> rm \$tmpfile >& /dev/null</span></span>
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291
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="perl"></span>
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292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="perl"><span class="s" style="color: #d14;"> # is MPI_Init a weak symbol?</span></span>
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293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="perl"><span class="s" style="color: #d14;"> # disable darshan if it is not</span></span>
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294
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="perl"><span class="s" style="color: #d14;"> if [ -e \$binfile ];</span></span>
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295
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="perl"><span class="s" style="color: #d14;"> then</span></span>
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296
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="perl"><span class="s" style="color: #d14;"> nm \$binfile | grep -i "mpi_init" | grep -i "w" >& /dev/null</span></span>
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297
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_weak=\$?</span></span>
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298
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="perl"><span class="s" style="color: #d14;"> else</span></span>
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299
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_weak=1</span></span>
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="perl"><span class="s" style="color: #d14;"> rm \$binfile >& /dev/null</span></span>
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294
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="perl"><span class="s" style="color: #d14;"> # disable darshan if the executable is not an MPI program <span class="idiff left right">(this featur</span>e</span></span>
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="perl"><span class="s" style="color: #d14;"> # <span class="idiff left right">mainly allows runtime configure tests to work</span></span></span>
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="perl"><span class="s" style="color: #d14;"> if [ \$rc_mpi -eq 0 ] ; then</span></span>
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right"># disable darshan if something else is already using PMPI; we don't</span></span></span>
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right"># want to cause any symbol conflicts</span></span></span>
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308
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">if [ \$rc_pmpi -ne 0 ] && [ \$compiler_check -eq 0 ] && [ \$rc_weak -eq 0 ]; then</span></span></span>
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="perl"><span class="s" style="color: #d14;"> # disable darshan if the executable is not an MPI program <span class="idiff left right">or we'v</span>e</span></span>
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="perl"><span class="s" style="color: #d14;"> # <span class="idiff left right">detected an incompatible compiler</span></span></span>
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="perl"><span class="s" style="color: #d14;"> if [ \$rc_mpi -eq 0 ] <span class="idiff left right">&& [ \$compiler_check -eq 0 ]</span>; then</span></span>
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298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">if [ \$rc_dyn -eq 0 ]; then</span></span></span>
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right"> \$Show \$CXX $link_cmd_prefix $dyn_link_cmd_suffix</span></span></span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">else</span></span></span>
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309
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301
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="perl"><span class="s" style="color: #d14;"> \$Show \$CXX $link_cmd_prefix $link_cmd_suffix</span></span>
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="perl"><span class="s" style="color: #d14;"> used_darshan=1</span></span>
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="perl"><span class="s" style="color: #d14;"> used_darshan=1</span></span>
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC306" class="line" lang="perl"><span class="s" style="color: #d14;"> # otherwise use the normal command line</span></span>
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<li id="9765bbdc8a4f2dfdddea193785c9cbcbe699d669">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#9765bbdc8a4f2dfdddea193785c9cbcbe699d669"><strong>darshan-runtime/darshan-gen-fortran.pl.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -83,6 +83,7 @@ $FC_from_link=$1;</td>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="perl"><span class="nv" style="color: #008080;">$link_cmd_prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$2</span><span class="p">;</span></span>
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84
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84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="perl"><span class="nv" style="color: #008080;">$base_link_cmd_suffix</span><span class="o" style="font-weight: 600;">=</span><span class="p">"</span><span class="se" style="color: #d14;">\"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">$</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">{allargs</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">[</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">@</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">]</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">}</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> $4</span><span class="p">";</span></span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="perl"><span class="nv" style="color: #008080;">$link_cmd_suffix</span><span class="o" style="font-weight: 600;">=</span><span class="p">"</span><span class="se" style="color: #d14;">\"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">$</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">{newallargs</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">[</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">@</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">]</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">}</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> </span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="si" style="color: #d14;">$FMPICH</span><span class="s2" style="color: #d14;"> `</span><span class="si" style="color: #d14;">$PREFIX</span><span class="s2" style="color: #d14;">/bin/darshan-config --pre-ld-flags` $4 `</span><span class="si" style="color: #d14;">$PREFIX</span><span class="s2" style="color: #d14;">/bin/darshan-config --post-ld-flags`</span><span class="p">";</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="perl"><span class="nv" style="color: #008080;">$dyn_link_cmd_suffix</span><span class="o" style="font-weight: 600;">=</span><span class="p">"</span><span class="se" style="color: #d14;">\"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">$</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">{newallargs</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">[</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">@</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">]</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s2" style="color: #d14;">}</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> </span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="si" style="color: #d14;">$FMPICH</span><span class="s2" style="color: #d14;"> `</span><span class="si" style="color: #d14;">$PREFIX</span><span class="s2" style="color: #d14;">/bin/darshan-config --dyn-ld-flags` $4</span><span class="p">";</span></span>
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86
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87
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="perl"></span>
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87
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88
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># repeat the above step for the compilation command line</span></span>
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88
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="perl"><span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="p">(</span><span class="nv" style="color: #008080;">$compile_cmd</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/(\S+)(.+)(-c foo.c)\s+(.*)/</span><span class="p">))</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -206,13 +207,6 @@ if [ "$linking" = yes ] ; then</td>
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206
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207
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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207
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208
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="perl"><span class="s" style="color: #d14;">EOF</span></span>
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208
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="nv" style="color: #008080;">OUTPUT</span><span class="s" style="color: #d14;"><<"EOF";</span></span>
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209
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="perl"><span class="s" style="color: #d14;"> # Trial run to generate a symbol listing. We only enable Darshan if:</span></span>
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210
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="perl"><span class="s" style="color: #d14;"> # a) MPI is used</span></span>
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211
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="perl"><span class="s" style="color: #d14;"> # b) PMPI is _not_ used</span></span>
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212
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="perl"><span class="s" style="color: #d14;"> #</span></span>
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213
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="perl"><span class="s" style="color: #d14;"> # We want Darshan to get out of the way if the user is doing a runtime</span></span>
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214
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="perl"><span class="s" style="color: #d14;"> # test in configure (in which case MPI objects break the executable) or</span></span>
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215
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="perl"><span class="s" style="color: #d14;"> # if the user is using another PMPI based tool</span></span>
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216
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210
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="perl"></span>
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217
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="perl"><span class="s" style="color: #d14;"> # if allargs includes any libraries, then we need to get </span></span>
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218
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="perl"><span class="s" style="color: #d14;"> # -ldarshan in there first</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -252,6 +246,14 @@ print OUTPUT<<"EOF";</td>
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252
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246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="perl"></span>
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253
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="perl"><span class="s" style="color: #d14;"> used_darshan=0</span></span>
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254
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="perl"></span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="perl"><span class="s" style="color: #d14;"> # Perform a test link before the real link. This allows us to check</span></span>
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250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="perl"><span class="s" style="color: #d14;"> # for two things:</span></span>
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251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="perl"><span class="s" style="color: #d14;"> # 1) Are MPI symbols present? Technically Darshan should not harm</span></span>
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252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="perl"><span class="s" style="color: #d14;"> # non-MPI programs, but it may bring in unwanted dependencies or</span></span>
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253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="perl"><span class="s" style="color: #d14;"> # interfere with autoconf checks.</span></span>
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254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="perl"><span class="s" style="color: #d14;"> # 2) Is this link command line going to produce a static or dynamic</span></span>
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255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="perl"><span class="s" style="color: #d14;"> # linked executable? We will adjust Darshan link strategy accordingly.</span></span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="perl"></span>
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255
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="perl"><span class="s" style="color: #d14;"> # create a temporary file</span></span>
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256
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258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="perl"><span class="s" style="color: #d14;"> tmpfile=`mktemp`</span></span>
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="perl"><span class="s" style="color: #d14;"> binfile=`mktemp`</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -271,10 +273,9 @@ print OUTPUT<<"EOF";</td>
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273
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="perl"><span class="s" style="color: #d14;"> grep -i MPI \$tmpfile >& /dev/null</span></span>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_mpi=\$?</span></span>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="perl"><span class="s" style="color: #d14;"> # is PMPI being used for PMPI_File_open?</span></span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="perl"><span class="s" style="color: #d14;"> grep -E PMPI_File_open \$tmpfile | grep -v -E \\(mpich.*\\.a\\) |grep \\(PMPI >& /dev/null</span></span>
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_pmpi=\$?</span></span>
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="perl"></span>
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="perl"><span class="s" style="color: #d14;"> # did the link options produce a dynamic executable?</span></span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="perl"><span class="s" style="color: #d14;"> ldd \$binfile >& /dev/null</span></span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_dyn=\$?</span></span>
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278
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279
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="perl"></span>
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279
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280
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="perl"><span class="s" style="color: #d14;"> # find appropriate fortran library name for profiling</span></span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="perl"><span class="s" style="color: #d14;"> grep -E libmpifort \$tmpfile >& /dev/null</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -298,27 +299,17 @@ print OUTPUT<<"EOF";</td>
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298
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299
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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299
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="perl"></span>
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300
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301
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="perl"><span class="s" style="color: #d14;"> rm \$tmpfile >& /dev/null</span></span>
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301
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="perl"></span>
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302
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="perl"><span class="s" style="color: #d14;"> # is MPI_Init a weak symbol?</span></span>
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303
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="perl"><span class="s" style="color: #d14;"> # disable darshan if it is not</span></span>
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304
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="perl"><span class="s" style="color: #d14;"> if [ -e \$binfile ];</span></span>
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305
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="perl"><span class="s" style="color: #d14;"> then</span></span>
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306
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="perl"><span class="s" style="color: #d14;"> nm \$binfile | grep -i "mpi_init" | grep -i "w" >& /dev/null</span></span>
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307
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_weak=\$?</span></span>
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308
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="perl"><span class="s" style="color: #d14;"> else</span></span>
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="perl"><span class="s" style="color: #d14;"> rc_weak=1</span></span>
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="perl"><span class="s" style="color: #d14;"> rm \$binfile >& /dev/null</span></span>
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312
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="perl"></span>
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313
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="perl"><span class="s" style="color: #d14;"> # disable darshan if the executable is not an MPI program <span class="idiff left right">(this featur</span>e</span></span>
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314
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<pre style="margin: 0;">-<span id="LC314" class="line" lang="perl"><span class="s" style="color: #d14;"> # <span class="idiff left right">mainly allows runtime configure tests to work</span></span></span>
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315
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="perl"><span class="s" style="color: #d14;"> if [ \$rc_mpi -eq 0 ] ; then</span></span>
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316
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<pre style="margin: 0;">-<span id="LC316" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right"># disable darshan if something else is already using PMPI; we don't</span></span></span>
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317
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<pre style="margin: 0;">-<span id="LC317" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right"># want to cause any symbol conflicts</span></span></span>
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<td class="diff-line-num old old_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
318
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<pre style="margin: 0;">-<span id="LC318" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">if [ \$rc_pmpi -ne 0 ] && [ \$compiler_check -eq 0 ] && [ \$rc_weak -eq 0 ]; then</span></span></span>
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304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="perl"><span class="s" style="color: #d14;"> # disable darshan if the executable is not an MPI program <span class="idiff left right">or we'v</span>e</span></span>
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305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="perl"><span class="s" style="color: #d14;"> # <span class="idiff left right">detected an incompatible compiler</span></span></span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="perl"><span class="s" style="color: #d14;"> if [ \$rc_mpi -eq 0 ] <span class="idiff left right">&& [ \$compiler_check -eq 0 ]</span>; then</span></span>
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">if [ \$rc_dyn -eq 0 ]; then</span></span></span>
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right"> \$Show \$FC $link_cmd_prefix $dyn_link_cmd_suffix</span></span></span>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="perl"><span class="s" style="color: #d14;"> <span class="idiff left right">else</span></span></span>
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310
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="perl"><span class="s" style="color: #d14;"> \$Show \$FC $link_cmd_prefix $link_cmd_suffix</span></span>
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="perl"><span class="s" style="color: #d14;"> used_darshan=1</span></span>
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311
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="perl"><span class="s" style="color: #d14;"> used_darshan=1</span></span>
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="perl"><span class="s" style="color: #d14;"> fi</span></span>
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="perl"><span class="s" style="color: #d14;"> # otherwise use the normal command line</span></span>
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<br>
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<li id="c1f1275094e9957965ea40cf5852335b4164fd05">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#c1f1275094e9957965ea40cf5852335b4164fd05"><strong>darshan-runtime/doc/darshan-runtime.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,18 +7,17 @@ This document describes darshan-runtime, which is the instrumentation</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">portion of the Darshan characterization tool. It should be installed on the</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">system where you intend to collect I/O characterization information.</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Darshan instruments applications via either compile time wrappers for static</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">executables or dynamic library preloading for dynamic executables. An</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">application that has been instrumented with Darshan will produce a single</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">log file each time it is executed. This log summarizes the I/O access patterns</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">used by the application.</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Darshan instruments applications via either compile time wrappers or</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">dynamic library preloading. An application that has been instrumented</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">with Darshan will produce a single log file each time it is executed.</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">This log summarizes the I/O access patterns used by the application.</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">The darshan-runtime instrumentation has traditionally only supported MPI</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">applications (specifically, those that call `MPI_Init()` and `MPI_Finalize()`),</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">but, as of version 3.2.0, Darshan also supports instrumentation of non-MPI</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">applications. Regardless of whether MPI is used, Darshan provides detailed</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">statistics about POSIX level file accesses made by the application.</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">In the case of MPI applications, Darshan additionally captures detals on MPI-IO</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">In the case of MPI applications, Darshan additionally captures deta<span class="idiff left right">i</span>ls on MPI-IO</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">level access, as well as limited information about HDF5 and PnetCDF access.</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Note that instrumentation of non-MPI applications is currently only supported</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">in Darshan's shared library, which applications must `LD_PRELOAD`.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -44,12 +43,12 @@ coarse-grained instrumentation methods.</td>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">This document provides generic installation instructions, but "recipes" for</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">several common HPC systems are provided at the end of the document as well.</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext">More information about Darshan can be found at the<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">More information about Darshan can be found at the</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext">http://www.mcs.anl.gov/darshan[Darshan web site].</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext">== Requirements</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext">* C compiler (prefer<span class="idiff left right">r</span>ably GCC-compatible)</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">* C compiler (preferably GCC-compatible)</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext">* zlib development headers and library</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">== Compilation</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -108,24 +107,11 @@ with support for HDF5 versions prior to 1.10</td>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext">* `--enable-HDF5-post-1.10`: enables the Darshan HDF5 instrumentation module,</span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext">with support for HDF5 versions 1.10 or higher</span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext">=== Cross compilation</span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext">On some systems (notably the IBM Blue Gene series), the login nodes do not</span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext">have the same architecture or runtime environment as the compute nodes. In</span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="plaintext">this case, you must configure darshan-runtime to be built using a cross</span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext">compiler. The following configure arguments show an example for the BG/P system:</span>
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117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext">--host=powerpc-bgp-linux CC=/bgsys/drivers/ppcfloor/comm/default/bin/mpicc </span>
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120
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext">----</span>
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121
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext">== Environment preparation</span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext">Once darshan-runtime has been installed, you must prepare a location</span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext">in which to store the Darshan log files and configure an instrumentation method.</span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext">=== Log directory</span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext">This step can be safely skipped if you configured darshan-runtime using the</span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext">`--with-log-path-by-env` option. A more typical configuration uses a static</span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext">directory hierarchy for Darshan log</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -138,7 +124,7 @@ placed. The deepest subdirectories will have sticky permissions to enable</td>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext">multiple users to write to the same directory. If the log directory is</span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext">shared system-wide across many users then the following script should be run</span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext">as root.</span>
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="plaintext"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext">darshan-mk-log-dirs.pl</span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext">----</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -161,36 +147,75 @@ administrators group</td>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext">* recursively set the setgid bit on the log directories</span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext">====</span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext">== Instrumenting applications</span>
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext">[NOTE]</span>
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext">====</span>
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext">More specific installation "recipes" are provided later in this document for</span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext">some platforms. This section of the documentation covers general techniques.</span>
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext">====</span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext">Once Darshan has been installed and a log path has been prepared, the next</span>
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext">step is to actually instrument applications. The preferred method is to</span>
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext">instrument applications at compile time.</span>
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext">=== Option 1: Instrumenting MPI applications at compile time</span>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext">=== Instrumentation method</span>
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext">This method is applicable to C, Fortran, and C++ MPI applications</span>
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext">(regardless of whether they are static or dynamicly linked) and is the most</span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext">straightforward method to apply transparently system-wide. It works by</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext">injecting additional libraries and options into the linker command line to</span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext">intercept relevant I/O calls.</span>
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166
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"></span>
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167
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext">The instrumentation method to use depends on whether the executables</span>
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168
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext">produced by your compiler are statically or dynamically linked. If you</span>
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169
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext">are unsure, you can check by running `ldd <executable_name>` on an example</span>
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170
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="plaintext">executable. Dynamically-linked executables will produce a list of shared</span>
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171
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext">libraries when this command is executed.</span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext">On Cray platforms you can enable the compile time instrumentation by simply</span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext">loading the Darshan module. It can then be enabled for all users by placing</span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext">that module in the default environment. As of Darshan 3.2.0 this will</span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext">instrument both static and dynamic executables, while in previous versions</span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext">of Darshan this was only sufficient for static executables. See the Cray</span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext">installation recipe for more details.</span>
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172
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"></span>
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173
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"><span class="idiff left right">Some compilers allow you to toggle dynamic or static linking via options</span></span>
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174
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="plaintext"><span class="idiff left right">such as `-dynamic` or `-static`. Please check your compiler man page</span></span>
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175
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"><span class="idiff left right">for details if you intend to force one mode or the other.</span></span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"><span class="idiff left right">For other general MPICH-based MPI implementations, you can generate</span></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"><span class="idiff left right">Darshan-enabled variants of the standard mpicc/mpicxx/mpif90/mpif77</span></span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"><span class="idiff left right">wrappers using the following commands:</span></span>
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176
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"></span>
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177
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext">== Instrumenting statically-linked MPI applications</span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext">----</span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext">darshan-gen-cc.pl `which mpicc` --output mpicc.darshan</span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext">darshan-gen-cxx.pl `which mpicxx` --output mpicxx.darshan</span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext">darshan-gen-fortran.pl `which mpif77` --output mpif77.darshan</span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext">darshan-gen-fortran.pl `which mpif90` --output mpif90.darshan</span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext">-----</span>
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178
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"></span>
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179
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="plaintext">Statically linked executables must be instrumented at compile time.</span>
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180
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="plaintext">The simplest methods to do this are to either generate a customized</span>
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181
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="plaintext">MPI compiler script (e.g. `mpicc`) that includes the link options and</span>
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182
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="plaintext">libraries needed by Darshan, or to use existing profiling configuration</span>
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183
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="plaintext">hooks for MPI compiler scripts. Once this is done, Darshan</span>
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184
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="plaintext">instrumentation is transparent; you simply compile applications using</span>
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185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="plaintext">the Darshan-enabled MPI compiler scripts.</span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext">The resulting *.darshan wrappers will transparently inject Darshan</span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext">instrumentation into the link step without any explicit user intervention.</span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext">They can be renamed and placed in an appropriate</span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext">PATH to enable automatic instrumentation. This method also works correctly</span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext">for both static and dynamic executables as of Darshan 3.2.0.</span>
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186
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"></span>
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187
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="plaintext">=== Using a profile configuration </span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext">For other systems you can enable compile-time instrumentation by either</span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext">manually adding the appropriate link options to your command line or</span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext">modifying your default MPI compiler script. The `darshan-config` command</span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext">line tool can be used to display the options that you should use:</span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"></span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext">----</span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"># Linker options to use for dynamic linking (default on most platforms)</span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"># These arguments should go *before* the MPI libraries in the underlying</span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"># linker command line to ensure that Darshan can be activated. It should</span>
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext"># also ideally go before other libraries that may issue I/O function calls.</span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext">darshan-config --dyn-ld-flags</span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"></span>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"># linker options to use for static linking</span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"># The first set of arguments should go early in the link command line</span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"># (before MPI, while the second set should go at the end of the link command</span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"># line</span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext">darshan-config --pre-ld-flags</span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext">darshan-config --post-ld-flags</span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext">==== Using a profile configuration</span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"></span>
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189
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="plaintext">[[static-prof]]</span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext">The MPICH MPI implementation supports the specification of a profiling library</span>
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191
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext">configuration that can be used to insert Darshan instrumentation without</span>
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192
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="plaintext">modifying the existing MPI compiler script. Example profiling configuration</span>
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193
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="plaintext">files are installed with Darshan 2.3.1 and later. You can enable a profiling</span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext">modifying the existing MPI compiler script. You can enable a profiling</span>
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194
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext">configuration using environment variables or command line arguments to the</span>
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195
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext">compiler scripts:</span>
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196
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -201,14 +226,6 @@ export MPICXX_PROFILE=$DARSHAN_PREFIX/share/mpi-profile/darshan-cxx</td>
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201
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext">export MPIFORT_PROFILE=$DARSHAN_PREFIX/share/mpi-profile/darshan-f</span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="plaintext">Example for MPICH 3.1 or earlier:</span>
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="plaintext">export MPICC_PROFILE=$DARSHAN_PREFIX/share/mpi-profile/darshan-cc</span>
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="plaintext">export MPICXX_PROFILE=$DARSHAN_PREFIX/share/mpi-profile/darshan-cxx</span>
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="plaintext">export MPIF77_PROFILE=$DARSHAN_PREFIX/share/mpi-profile/darshan-f</span>
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="plaintext">export MPIF90_PROFILE=$DARSHAN_PREFIX/share/mpi-profile/darshan-f</span>
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext">Examples for command line use:</span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext">mpicc -profile=$DARSHAN_PREFIX/share/mpi-profile/darshan-c <args></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -217,36 +234,20 @@ mpif77 -profile=$DARSHAN_PREFIX/share/mpi-profile/darshan-f <args></td>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext">mpif90 -profile=$DARSHAN_PREFIX/share/mpi-profile/darshan-f <args></span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="plaintext">=== Using customized compiler wrapper scripts</span>
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="plaintext">[[static-wrapper]]</span>
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="plaintext">For MPICH-based MPI libraries, such as MPICH1, MPICH2, or MVAPICH,</span>
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="plaintext">custom wrapper scripts can be generated to automatically include Darshan</span>
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext">instrumentation. The following example illustrates how to produce</span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="plaintext">wrappers for C, C++, and Fortran compilers:</span>
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="plaintext">darshan-gen-cc.pl `which mpicc` --output mpicc.darshan</span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="plaintext">darshan-gen-cxx.pl `which mpicxx` --output mpicxx.darshan</span>
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="plaintext">darshan-gen-fortran.pl `which mpif77` --output mpif77.darshan</span>
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="plaintext">darshan-gen-fortran.pl `which mpif90` --output mpif90.darshan</span>
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="plaintext">-----</span>
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC235" class="line" lang="plaintext">=== Other configurations</span>
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="plaintext">Please see the Cray recipe in this document for instructions on</span>
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="plaintext">instrumenting statically-linked applications on that platform.</span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext">Note that unlike the previously described methods in this section, this</span>
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext">method *will not* automatically adapt to static and dynamic linking options.</span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext">The example profile configurations show above only support dynamic linking.</span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="plaintext">For other MPI Libraries you must manually modify the MPI compiler scripts to</span>
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="plaintext">add the necessary link options and libraries. Please see the</span>
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="plaintext">`darshan-gen-*` scripts for examples or contact the Darshan users mailing</span>
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="plaintext">list for help.</span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext">Example profile configurations are also provided with a "-static" suffix if</span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext">you need examples for static linking.</span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="plaintext">==<span class="idiff left right"> Instrumenting dynamically-linked MPI applications</span></span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext">==<span class="idiff left right">= Option 2: Instrumenting MPI applications at run time</span></span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="plaintext">For dynamically-linked executables, Darshan relies on the `LD_PRELOAD`</span>
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="plaintext">environment variable to insert instrumentation at run time. The executables</span>
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<pre style="margin: 0;">-<span id="LC249" class="line" lang="plaintext">should be compiled using the normal, unmodified MPI compiler.</span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext">This method is applicable to pre-compiled dynamically linked executables</span>
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="plaintext">as well as interpreted languages such as Python. You do not need to</span>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext">change your compile options in any way. This method works by injecting</span>
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext">instrumentation at run time. It will not work for statically linked</span>
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext">executables.</span>
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext">To use this mechanism, set the `LD_PRELOAD` environment variable to the full</span>
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext">path to the Darshan shared library. The preferred method of inserting Darshan</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -285,28 +286,7 @@ For SGI systems running the MPT environment, it may be necessary to set the `MPI</td>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext">environment variable equal to `true` to avoid deadlock when preloading the Darshan shared</span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext">library.</span>
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="plaintext">=== Instrumenting dynamically-linked Fortran applications</span>
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="plaintext">Please follow the general steps outlined in the previous section. For</span>
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="plaintext">Fortran applications compiled with MPICH you may have to take the additional</span>
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="plaintext">step of adding</span>
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="plaintext">`libfmpich.so` to your `LD_PRELOAD` environment variable. For example:</span>
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="plaintext">export LD_PRELOAD=/path/to/mpi/used/by/executable/lib/libfmpich.so:/home/carns/darshan-install/lib/libdarshan.so</span>
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="plaintext">[NOTE]</span>
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="plaintext">The full path to the libfmpich.so library can be omitted if the rpath</span>
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="plaintext">variable points to the correct path. Be careful to check the rpath of the</span>
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="plaintext">darshan library and the executable before using this configuration, however.</span>
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="plaintext">They may provide conflicting paths. Ideally the rpath to the MPI library</span>
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="plaintext">would *not* be set by the Darshan library, but would instead be specified</span>
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="plaintext">exclusively by the executable itself. You can check the rpath of the</span>
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="plaintext">darshan library by running `objdump -x</span>
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="plaintext">/home/carns/darshan-install/lib/libdarshan.so |grep RPATH`.</span>
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="plaintext">== Instrumenting dynamically-linked non-MPI applications</span>
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext">=== Option 3: Instrumenting non-MPI applications at run time</span>
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="plaintext">Similar to the process described in the previous section, Darshan relies on the</span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="plaintext">`LD_PRELOAD` mechanism for instrumenting dynamically-linked non-MPI applications.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="335" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -335,6 +315,17 @@ env LD_PRELOAD=/home/carns/darshan-install/lib/libdarshan.so io-test</td>
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="plaintext">Recall that Darshan instrumentation of non-MPI applications is only possible with </span>
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="plaintext">dynamically-linked applications.</span>
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="plaintext">=== Using other profiling tools at the same time as Darshan</span>
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="plaintext">As of Darshan version 3.2.0, Darshan does not necessarily interfere with</span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="plaintext">other profiling tools (particularly those using the PMPI profiling</span>
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="plaintext">interface). Darshan itself does not use the PMPI interface, and instead</span>
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="plaintext">uses dynamic linker symbol interception or --wrap function interception for</span>
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="plaintext">static executables.</span>
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="plaintext">As a rule of thumb most profiling tools should appear in the linker command</span>
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="plaintext">line *before* -ldarshan if possible.</span>
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC329" class="line" lang="plaintext">== Using the Darshan eXtended Tracing (DXT) module</span>
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339
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<pre style="margin: 0;"> <span id="LC330" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC331" class="line" lang="plaintext">DXT support is disabled by default in Darshan, requiring the user to either explicitly</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -349,7 +340,7 @@ export DXT_ENABLE_IO_TRACE=1</td>
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349
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<pre style="margin: 0;"> <span id="LC340" class="line" lang="plaintext">----</span>
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350
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341
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<pre style="margin: 0;"> <span id="LC341" class="line" lang="plaintext"></span>
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351
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<pre style="margin: 0;"> <span id="LC342" class="line" lang="plaintext">To enable tracing for particular files, DXT additionally offers a trace</span>
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352
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<pre style="margin: 0;">-<span id="LC352" class="line" lang="plaintext">triggering mechan<span class="idiff left right">si</span>m, with users specifying triggers used to decide whether or</span>
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="plaintext">triggering mechan<span class="idiff left right">is</span>m, with users specifying triggers used to decide whether or</span>
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353
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="plaintext">not to trace a particular file at runtime. Files that do not match any trace</span>
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354
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="plaintext">trigger will not store trace data in the Darshan log. Currently, DXT supports</span>
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="plaintext">the following types of trace triggers:</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -360,7 +351,7 @@ the following types of trace triggers:</td>
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<pre style="margin: 0;"> <span id="LC351" class="line" lang="plaintext"></span>
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361
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<pre style="margin: 0;"> <span id="LC352" class="line" lang="plaintext">Users simply need to specify one or more of these triggers in a text file that is passed</span>
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<pre style="margin: 0;"> <span id="LC353" class="line" lang="plaintext">to DXT at runtime -- when multiple triggers are specified, DXT will keep any file traces</span>
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<pre style="margin: 0;">-<span id="LC363" class="line" lang="plaintext">that match at least one trigger (i.e., the trace decision is a logical OR ac<span class="idiff left right">c</span>ross given triggers).</span>
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="plaintext">that match at least one trigger (i.e., the trace decision is a logical OR across given triggers).</span>
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<pre style="margin: 0;"> <span id="LC355" class="line" lang="plaintext">An example configuration file is given below, illustrating the syntax to use for currently</span>
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<pre style="margin: 0;"> <span id="LC356" class="line" lang="plaintext">supported triggers:</span>
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366
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<pre style="margin: 0;"> <span id="LC357" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -391,76 +382,26 @@ The following recipes provide examples for prominent HPC systems.</td>
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391
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="plaintext">These are intended to be used as a starting point. You will most likely have to adjust paths and options to</span>
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<pre style="margin: 0;"> <span id="LC383" class="line" lang="plaintext">reflect the specifics of your system.</span>
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384
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="plaintext"></span>
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394
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<pre style="margin: 0;">-<span id="LC394" class="line" lang="plaintext">=== IBM Blue Gene (BG/P or BG/Q)</span>
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395
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<pre style="margin: 0;">-<span id="LC395" class="line" lang="plaintext"></span>
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396
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<pre style="margin: 0;">-<span id="LC396" class="line" lang="plaintext">IBM Blue Gene systems produces static executables by default, uses a</span>
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397
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<pre style="margin: 0;">-<span id="LC397" class="line" lang="plaintext">different architecture for login and compute nodes, and uses an MPI</span>
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398
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<pre style="margin: 0;">-<span id="LC398" class="line" lang="plaintext">environment based on MPICH.</span>
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399
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<pre style="margin: 0;">-<span id="LC399" class="line" lang="plaintext"></span>
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400
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<pre style="margin: 0;">-<span id="LC400" class="line" lang="plaintext">The following example shows how to configure Darshan on a BG/P system:</span>
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401
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<pre style="margin: 0;">-<span id="LC401" class="line" lang="plaintext"></span>
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402
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<pre style="margin: 0;">-<span id="LC402" class="line" lang="plaintext">----</span>
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403
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<pre style="margin: 0;">-<span id="LC403" class="line" lang="plaintext">./configure --with-mem-align=16 \</span>
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404
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<pre style="margin: 0;">-<span id="LC404" class="line" lang="plaintext"> --with-log-path=/home/carns/working/darshan/releases/logs \</span>
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405
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<pre style="margin: 0;">-<span id="LC405" class="line" lang="plaintext"> --prefix=/home/carns/working/darshan/install --with-jobid-env=COBALT_JOBID \</span>
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406
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<pre style="margin: 0;">-<span id="LC406" class="line" lang="plaintext"> --with-zlib=/soft/apps/zlib-1.2.3/ \</span>
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407
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<pre style="margin: 0;">-<span id="LC407" class="line" lang="plaintext"> --host=powerpc-bgp-linux CC=/bgsys/drivers/ppcfloor/comm/default/bin/mpicc </span>
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408
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<pre style="margin: 0;">-<span id="LC408" class="line" lang="plaintext">----</span>
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409
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<pre style="margin: 0;">-<span id="LC409" class="line" lang="plaintext"></span>
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410
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="plaintext">.Rationale</span>
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411
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="plaintext">[NOTE]</span>
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412
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<pre style="margin: 0;">-<span id="LC412" class="line" lang="plaintext">====</span>
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413
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<pre style="margin: 0;">-<span id="LC413" class="line" lang="plaintext">The memory alignment is set to 16 not because that is the proper alignment</span>
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414
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<pre style="margin: 0;">-<span id="LC414" class="line" lang="plaintext">for the BG/P CPU architecture, but because that is the optimal alignment for</span>
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415
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="plaintext">the network transport used between compute nodes and I/O nodes in the</span>
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416
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<pre style="margin: 0;">-<span id="LC416" class="line" lang="plaintext">system. The jobid environment variable is set to `COBALT_JOBID` in this</span>
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417
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<pre style="margin: 0;">-<span id="LC417" class="line" lang="plaintext">case for use with the Cobalt scheduler, but other BG/P systems may use</span>
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418
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<pre style="margin: 0;">-<span id="LC418" class="line" lang="plaintext">different schedulers. The `--with-zlib` argument is used to point to a</span>
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<pre style="margin: 0;">-<span id="LC419" class="line" lang="plaintext">version of zlib that has been compiled for use on the compute nodes rather</span>
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<pre style="margin: 0;">-<span id="LC420" class="line" lang="plaintext">than the login node. The `--host` argument is used to force cross-compilation</span>
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<pre style="margin: 0;">-<span id="LC421" class="line" lang="plaintext">of Darshan. The `CC` variable is set to point to a stock MPI compiler.</span>
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<pre style="margin: 0;">-<span id="LC422" class="line" lang="plaintext">====</span>
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC424" class="line" lang="plaintext">Once Darshan has been installed, you can use one of the static</span>
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<pre style="margin: 0;">-<span id="LC425" class="line" lang="plaintext">instrumentation methods described earlier in this document. If you</span>
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426
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<pre style="margin: 0;">-<span id="LC426" class="line" lang="plaintext">use the profiling configuration file method, then please note that the</span>
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<pre style="margin: 0;">-<span id="LC427" class="line" lang="plaintext">Darshan installation includes profiling configuration files that have been</span>
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<pre style="margin: 0;">-<span id="LC428" class="line" lang="plaintext">adapted specifically for the Blue Gene environment. Set the following</span>
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<pre style="margin: 0;">-<span id="LC429" class="line" lang="plaintext">environment variables to enable them, and then use your normal compiler</span>
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<pre style="margin: 0;">-<span id="LC430" class="line" lang="plaintext">scripts. This method is compatible with both GNU and IBM compilers.</span>
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<pre style="margin: 0;">-<span id="LC431" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC432" class="line" lang="plaintext">Blue Gene profiling configuration example:</span>
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<pre style="margin: 0;">-<span id="LC433" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;">-<span id="LC434" class="line" lang="plaintext">export MPICC_PROFILE=$DARSHAN_PREFIX/share/mpi-profile/darshan-bg-cc</span>
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435
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<pre style="margin: 0;">-<span id="LC435" class="line" lang="plaintext">export MPICXX_PROFILE=$DARSHAN_PREFIX/share/mpi-profile/darshan-bg-cxx</span>
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436
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<pre style="margin: 0;">-<span id="LC436" class="line" lang="plaintext">export MPIF77_PROFILE=$DARSHAN_PREFIX/share/mpi-profile/darshan-bg-f</span>
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<pre style="margin: 0;">-<span id="LC437" class="line" lang="plaintext">export MPIF90_PROFILE=$DARSHAN_PREFIX/share/mpi-profile/darshan-bg-f</span>
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438
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<pre style="margin: 0;">-<span id="LC438" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;">-<span id="LC439" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC385" class="line" lang="plaintext">=== Cray platforms (XE, XC, or similar)</span>
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441
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<pre style="margin: 0;"> <span id="LC386" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC442" class="line" lang="plaintext">The Cray programming environment produces static executables by default,</span>
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443
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<pre style="margin: 0;">-<span id="LC443" class="line" lang="plaintext">which means that Darshan instrumentation must be inserted at compile</span>
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<pre style="margin: 0;">-<span id="LC444" class="line" lang="plaintext">time. This can be accomplished by loading a software module that sets</span>
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="plaintext">appropriate environment variables to modify the Cray compiler script link</span>
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446
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<pre style="margin: 0;">-<span id="LC446" class="line" lang="plaintext">behavior. This section describes how to compile and install Darshan,</span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="plaintext">This section describes how to compile and install Darshan,</span>
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447
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<pre style="margin: 0;"> <span id="LC388" class="line" lang="plaintext">as well as how to use a software module to enable and disable Darshan</span>
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448
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<pre style="margin: 0;">-<span id="LC448" class="line" lang="plaintext">instrumentation.</span>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="plaintext">instrumentation<span class="idiff left right"> on Cray systems</span>.</span>
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449
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390
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<pre style="margin: 0;"> <span id="LC390" class="line" lang="plaintext"></span>
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450
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391
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<pre style="margin: 0;"> <span id="LC391" class="line" lang="plaintext">==== Building and installing Darshan</span>
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451
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392
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<pre style="margin: 0;"> <span id="LC392" class="line" lang="plaintext"></span>
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452
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<pre style="margin: 0;"> <span id="LC393" class="line" lang="plaintext">Please set your environment to use the GNU programming environment before</span>
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453
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<pre style="margin: 0;"> <span id="LC394" class="line" lang="plaintext">configuring or compiling Darshan. Although Darshan can be built with a</span>
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454
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<pre style="margin: 0;">-<span id="LC454" class="line" lang="plaintext">variety of compilers, the GNU compiler<span class="idiff left right">s are</span> recommended because it will</span>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="plaintext">variety of compilers, the GNU compiler<span class="idiff left right"> is</span> recommended because it will</span>
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455
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<td class="diff-line-num new_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC396" class="line" lang="plaintext">produce a Darshan library that is interoperable with the widest range</span>
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456
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<pre style="margin: 0;"> <span id="LC397" class="line" lang="plaintext">of compilers and linkers. On most Cray systems you can enable the GNU</span>
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457
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<pre style="margin: 0;">-<span id="LC457" class="line" lang="plaintext">programming environment with a command similar to "module swap PrgEnv-<span class="idiff left right">pgi</span></span>
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398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="plaintext">programming environment with a command similar to "module swap PrgEnv-<span class="idiff left right">intel</span></span>
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458
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399
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<pre style="margin: 0;"> <span id="LC399" class="line" lang="plaintext">PrgEnv-gnu". Please see your site documentation for information about</span>
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459
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400
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<pre style="margin: 0;"> <span id="LC400" class="line" lang="plaintext">how to switch programming environments.</span>
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460
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401
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<pre style="margin: 0;"> <span id="LC401" class="line" lang="plaintext"></span>
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461
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<pre style="margin: 0;"> <span id="LC402" class="line" lang="plaintext">The following example shows how to configure and build Darshan on a Cray</span>
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462
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<pre style="margin: 0;">-<span id="LC462" class="line" lang="plaintext">system using the GNU programming environment. Adjust the<span class="idiff left right"> </span></span>
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463
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<pre style="margin: 0;">-<span id="LC463" class="line" lang="plaintext">--with-log-path and --prefix arguments to point to the desired log file path<span class="idiff left right"> </span></span>
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403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="plaintext">system using the GNU programming environment. Adjust the</span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="plaintext">--with-log-path and --prefix arguments to point to the desired log file path</span>
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464
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405
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<pre style="margin: 0;"> <span id="LC405" class="line" lang="plaintext">and installation path, respectively.</span>
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465
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406
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<pre style="margin: 0;"> <span id="LC406" class="line" lang="plaintext"></span>
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466
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407
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<pre style="margin: 0;"> <span id="LC407" class="line" lang="plaintext">----</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -488,8 +429,8 @@ Darshan will typically use the LOGNAME environment variable to determine a</td>
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488
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429
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<pre style="margin: 0;"> <span id="LC429" class="line" lang="plaintext">userid.</span>
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489
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430
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<pre style="margin: 0;"> <span id="LC430" class="line" lang="plaintext">====</span>
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490
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431
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<pre style="margin: 0;"> <span id="LC431" class="line" lang="plaintext"></span>
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491
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<pre style="margin: 0;">-<span id="LC491" class="line" lang="plaintext">As in any Darshan installation, the darshan-mk-log-dirs.pl script can then be<span class="idiff left right"> </span></span>
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492
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<pre style="margin: 0;">-<span id="LC492" class="line" lang="plaintext">used to create the appropriate directory hierarchy for storing Darshan log<span class="idiff left right"> </span></span>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="plaintext">As in any Darshan installation, the darshan-mk-log-dirs.pl script can then be</span>
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433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="plaintext">used to create the appropriate directory hierarchy for storing Darshan log</span>
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493
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<pre style="margin: 0;"> <span id="LC434" class="line" lang="plaintext">files in the --with-log-path directory.</span>
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494
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435
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<pre style="margin: 0;"> <span id="LC435" class="line" lang="plaintext"></span>
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495
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436
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<pre style="margin: 0;"> <span id="LC436" class="line" lang="plaintext">Note that Darshan is not currently capable of detecting the stripe size</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -497,7 +438,7 @@ Note that Darshan is not currently capable of detecting the stripe size</td>
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497
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438
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<pre style="margin: 0;"> <span id="LC438" class="line" lang="plaintext">If a Lustre file system is detected, then Darshan assumes an optimal</span>
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498
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439
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<pre style="margin: 0;"> <span id="LC439" class="line" lang="plaintext">file alignment of 1 MiB.</span>
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499
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440
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<pre style="margin: 0;"> <span id="LC440" class="line" lang="plaintext"></span>
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500
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<pre style="margin: 0;">-<span id="LC500" class="line" lang="plaintext">==== Enabling Darshan instrumentation<span class="idiff left right"> </span></span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="plaintext">==== Enabling Darshan instrumentation</span>
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501
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442
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<pre style="margin: 0;"> <span id="LC442" class="line" lang="plaintext"></span>
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502
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443
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<pre style="margin: 0;"> <span id="LC443" class="line" lang="plaintext">Darshan will automatically install example software module files in the</span>
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503
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444
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<pre style="margin: 0;"> <span id="LC444" class="line" lang="plaintext">following locations (depending on how you specified the --prefix option in</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="472" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -531,10 +472,25 @@ command:</td>
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531
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472
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<pre style="margin: 0;"> <span id="LC472" class="line" lang="plaintext">module use /soft/darshan-2.2.3/share/craype-<VERSION>/modulefiles</span>
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532
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473
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="plaintext">----</span>
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533
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474
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<pre style="margin: 0;"> <span id="LC474" class="line" lang="plaintext"></span>
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534
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<pre style="margin: 0;">-<span id="LC534" class="line" lang="plaintext">From this point, Darshan instrumenation can be enabled for all future</span>
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="plaintext">From this point, Darshan instrumen<span class="idiff left right">t</span>ation can be enabled for all future</span>
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<pre style="margin: 0;"> <span id="LC476" class="line" lang="plaintext">application compilations by running "module load darshan".</span>
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477
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<pre style="margin: 0;"> <span id="LC477" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC537" class="line" lang="plaintext">=== Linux clusters using Intel MPI </span>
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="plaintext">=== Linux clusters using MPICH</span>
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479
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="plaintext">Most MPICH installations produce dynamic executables by default. To</span>
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481
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="plaintext">configure Darshan in this environment you can use the following example. We</span>
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482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="plaintext">recommend using mpicc with GNU compilers to compile Darshan.</span>
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483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="plaintext"></span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="plaintext">----</span>
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485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="plaintext">./configure --with-log-path=/darshan-logs --with-jobid-env=PBS_JOBID CC=mpicc</span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="plaintext">----</span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="plaintext"></span>
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488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="plaintext">The darshan-gen-* scripts described earlier in this document can be used</span>
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489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="plaintext">to create variants of the standard mpicc/mpicxx/mpif77/mpif90 scipts</span>
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490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="plaintext">that are Darshan enabled. These scripts will work correctly for both</span>
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491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="plaintext">dynamic and statically linked executables.</span>
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492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="plaintext">=== Linux clusters using Intel MPI</span>
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538
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494
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<pre style="margin: 0;"> <span id="LC494" class="line" lang="plaintext"></span>
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539
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495
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<pre style="margin: 0;"> <span id="LC495" class="line" lang="plaintext">Most Intel MPI installations produce dynamic executables by default. To</span>
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540
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496
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<pre style="margin: 0;"> <span id="LC496" class="line" lang="plaintext">configure Darshan in this environment you can use the following example:</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -551,29 +507,11 @@ the underlying GNU compilers rather than the Intel ICC compilers to compile</td>
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551
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507
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<pre style="margin: 0;"> <span id="LC507" class="line" lang="plaintext">Darshan itself.</span>
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552
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508
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<pre style="margin: 0;"> <span id="LC508" class="line" lang="plaintext">====</span>
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553
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509
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<pre style="margin: 0;"> <span id="LC509" class="line" lang="plaintext"></span>
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554
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<pre style="margin: 0;">-<span id="LC554" class="line" lang="plaintext">You can use the `LD_PRELOAD` method described earlier in this document to</span>
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555
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<pre style="margin: 0;">-<span id="LC555" class="line" lang="plaintext">instrument executables compiled with the Intel MPI compiler scripts. This</span>
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556
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<pre style="margin: 0;">-<span id="LC556" class="line" lang="plaintext">method has been briefly tested using both GNU and Intel compilers.</span>
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557
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<pre style="margin: 0;">-<span id="LC557" class="line" lang="plaintext"></span>
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558
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<pre style="margin: 0;">-<span id="LC558" class="line" lang="plaintext">=== Linux clusters using MPICH </span>
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559
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<pre style="margin: 0;">-<span id="LC559" class="line" lang="plaintext"></span>
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560
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<pre style="margin: 0;">-<span id="LC560" class="line" lang="plaintext">Follow the generic instructions provided at the top of this document. For MPICH versions 3.1 and</span>
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561
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<pre style="margin: 0;">-<span id="LC561" class="line" lang="plaintext">later, MPICH uses shared libraries by default, so you may need to consider the dynamic linking</span>
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562
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<pre style="margin: 0;">-<span id="LC562" class="line" lang="plaintext">instrumentation approach. </span>
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510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="plaintext">You can enable Darshan instrumentation at compile time by adding</span>
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511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="plaintext">`darshan-config --dyn-ld-flags` options to your linker command line.</span>
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563
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512
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<pre style="margin: 0;"> <span id="LC512" class="line" lang="plaintext"></span>
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564
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<pre style="margin: 0;">-<span id="LC564" class="line" lang="plaintext">The static linking method can be used if MPICH is configured to use static</span>
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565
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<pre style="margin: 0;">-<span id="LC565" class="line" lang="plaintext">linking by default, or if you are using a version prior to 3.1.</span>
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566
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<pre style="margin: 0;">-<span id="LC566" class="line" lang="plaintext">The only modification is to make sure that the `CC` used for compilation is</span>
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567
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<pre style="margin: 0;">-<span id="LC567" class="line" lang="plaintext">based on a GNU compiler. Once Darshan has been installed, it should be</span>
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568
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<pre style="margin: 0;">-<span id="LC568" class="line" lang="plaintext">capable of instrumenting executables built with GNU, Intel, and PGI</span>
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569
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<pre style="margin: 0;">-<span id="LC569" class="line" lang="plaintext">compilers.</span>
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570
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<pre style="margin: 0;">-<span id="LC570" class="line" lang="plaintext"></span>
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571
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<pre style="margin: 0;">-<span id="LC571" class="line" lang="plaintext">[NOTE]</span>
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572
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<pre style="margin: 0;">-<span id="LC572" class="line" lang="plaintext">MPICH versions 3.1, 3.1.1, 3.1.2, and 3.1.3 may produce link-time errors when building static</span>
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573
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<pre style="margin: 0;">-<span id="LC573" class="line" lang="plaintext">executables (i.e. using the -static option) if MPICH is built with shared library support.</span>
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574
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<pre style="margin: 0;">-<span id="LC574" class="line" lang="plaintext">Please see http://trac.mpich.org/projects/mpich/ticket/2190 for more details. The workaround if you</span>
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575
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<pre style="margin: 0;">-<span id="LC575" class="line" lang="plaintext">wish to use static linking is to configure MPICH with `--enable-shared=no --enable-static=yes` to</span>
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576
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<pre style="margin: 0;">-<span id="LC576" class="line" lang="plaintext">force it to use static MPI libraries with correct dependencies.</span>
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="plaintext">Alternatively you can use `LD_PRELOAD` runtime instrumentation method to</span>
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="plaintext">instrument executables that have already been compiled.</span>
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515
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<pre style="margin: 0;"> <span id="LC515" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC516" class="line" lang="plaintext">=== Linux clusters using Open MPI</span>
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517
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<pre style="margin: 0;"> <span id="LC517" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -581,13 +519,11 @@ Follow the generic instructions provided at the top of this document for</td>
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519
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<pre style="margin: 0;"> <span id="LC519" class="line" lang="plaintext">compilation, and make sure that the `CC` used for compilation is based on a</span>
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582
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520
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<pre style="margin: 0;"> <span id="LC520" class="line" lang="plaintext">GNU compiler.</span>
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583
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521
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<pre style="margin: 0;"> <span id="LC521" class="line" lang="plaintext"></span>
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584
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<pre style="margin: 0;">-<span id="LC584" class="line" lang="plaintext">Open MPI typically produces dynamically linked executables by default, which</span>
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585
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<pre style="margin: 0;">-<span id="LC585" class="line" lang="plaintext">means that you should use the `LD_PRELOAD` method to instrument executables</span>
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586
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<pre style="margin: 0;">-<span id="LC586" class="line" lang="plaintext">that have been built with Open MPI. Darshan is only compatible with Open</span>
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587
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<pre style="margin: 0;">-<span id="LC587" class="line" lang="plaintext">MPI 1.6.4 and newer. For more details on why Darshan is not compatible with</span>
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588
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<pre style="margin: 0;">-<span id="LC588" class="line" lang="plaintext">older versions of Open MPI, please refer to the following mailing list discussion:</span>
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="plaintext">You can enable Darshan instrumentation at compile time by adding</span>
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="plaintext">`darshan-config --dyn-ld-flags` options to your linker command line.</span>
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589
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<pre style="margin: 0;"> <span id="LC524" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC590" class="line" lang="plaintext">http://www.open-mpi.org/community/lists/devel/2013/01/11907.php</span>
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="plaintext">Alternatively you can use `LD_PRELOAD` runtime instrumentation method to</span>
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="plaintext">instrument executables that have already been compiled.</span>
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591
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527
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<pre style="margin: 0;"> <span id="LC527" class="line" lang="plaintext"></span>
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592
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<pre style="margin: 0;"> <span id="LC528" class="line" lang="plaintext">== Upgrading to Darshan 3.x from 2.x</span>
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593
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<pre style="margin: 0;"> <span id="LC529" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -661,19 +597,21 @@ For statically linked executables:</td>
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<pre style="margin: 0;"> <span id="LC597" class="line" lang="plaintext">00000000004070a0 T darshan_core_register_module</span>
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662
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<pre style="margin: 0;"> <span id="LC598" class="line" lang="plaintext">----</span>
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599
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<pre style="margin: 0;"> <span id="LC599" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC664" class="line" lang="plaintext">* Make sure the application executable is statically linked:</span>
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<pre style="margin: 0;">-<span id="LC665" class="line" lang="plaintext"> ** In general, we encourage the use of purely statically linked executables when using the static</span>
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666
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<pre style="margin: 0;">-<span id="LC666" class="line" lang="plaintext">instrumentation method given in link:darshan-runtime.html#_instrumenting_statically_linked_applications[Section 5]</span>
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667
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<pre style="margin: 0;">-<span id="LC667" class="line" lang="plaintext"> ** If purely static executables are not an option, we encourage users to use the LD_PRELOAD method of</span>
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668
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<pre style="margin: 0;">-<span id="LC668" class="line" lang="plaintext">instrumentation given in link:darshan-runtime.html#_instrumenting_dynamically_linked_applications[Section 6]</span>
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669
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<pre style="margin: 0;">-<span id="LC669" class="line" lang="plaintext"> ** Statically linked executables are the default on Cray platforms and the IBM BG platforms; </span>
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670
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<pre style="margin: 0;">-<span id="LC670" class="line" lang="plaintext">statically linked executables can be explicitly requested using the `-static` compile option to most compilers</span>
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671
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<pre style="margin: 0;">-<span id="LC671" class="line" lang="plaintext"> ** You can verify that an executable is purely statically linked by using the `file` command:</span>
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="plaintext">For dynamically linked executables:</span>
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601
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="plaintext">* Ensure that the Darshan library is present in the list of shared libraries</span>
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<pre style="margin: 0;">+<span id="LC603" class="line" lang="plaintext"> to be used by the application, and that it appears before the MPI library:</span>
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604
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<pre style="margin: 0;"> <span id="LC604" class="line" lang="plaintext">----</span>
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673
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<pre style="margin: 0;">-<span id="LC673" class="line" lang="plaintext">> file mpi-io-test</span>
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674
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<pre style="margin: 0;">-<span id="LC674" class="line" lang="plaintext">mpi-io-test: ELF 64-bit LSB executable, x86-64, version 1 (GNU/Linux), statically linked, for GNU/Linux 2.6.24, BuildID[sha1]=9893e599e7a560159ccf547b4c4ba5671f65ba32, not stripped</span>
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="plaintext">> ldd mpi-io-test</span>
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606
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<pre style="margin: 0;">+<span id="LC606" class="line" lang="plaintext"> linux-vdso.so.1 (0x00007ffd83925000)</span>
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607
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<pre style="margin: 0;">+<span id="LC607" class="line" lang="plaintext"> libdarshan.so => /home/carns/working/install/lib/libdarshan.so (0x00007f0f4a7a6000)</span>
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608
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="plaintext"> libmpi.so.12 => /home/carns/working/src/spack/opt/spack/linux-ubuntu19.10-skylake/gcc-9.2.1/mpich-3.3.2-h3dybprufq7i5kt4hcyfoyihnrnbaogk/lib/libmpi.so.12 (0x00007f0f4a44f000)</span>
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609
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<pre style="margin: 0;">+<span id="LC609" class="line" lang="plaintext"> libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f0f4a241000)</span>
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610
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<pre style="margin: 0;">+<span id="LC610" class="line" lang="plaintext"> ...</span>
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675
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611
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<pre style="margin: 0;"> <span id="LC611" class="line" lang="plaintext">----</span>
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676
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612
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<pre style="margin: 0;"> <span id="LC612" class="line" lang="plaintext"></span>
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613
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<pre style="margin: 0;">+<span id="LC613" class="line" lang="plaintext">General:</span>
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614
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<pre style="margin: 0;">+<span id="LC614" class="line" lang="plaintext"></span>
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677
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<pre style="margin: 0;"> <span id="LC615" class="line" lang="plaintext">* Ensure that the linker is correctly linking in Darshan's runtime libraries:</span>
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678
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<pre style="margin: 0;"> <span id="LC616" class="line" lang="plaintext"> ** A common mistake is to explicitly link in the underlying MPI libraries (e.g., `-lmpich` or `-lmpichf90`)</span>
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679
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<pre style="margin: 0;"> <span id="LC617" class="line" lang="plaintext">in the link command, which can interfere with Darshan's instrumentation</span>
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<li id="41ff3c0222ed422ba7aec7f2c85217f75d7a5d59">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#41ff3c0222ed422ba7aec7f2c85217f75d7a5d59"><strong>darshan-runtime/lib/pkgconfig/darshan-runtime.pc.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,5 +15,5 @@ darshan_libdir= -L${darshan_prefix}/lib</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">darshan_linkopts="-Wl,@${darshan_share}/ld-opts/darshan-base-ld-opts"</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Cflags:</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">Libs:</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">Libs:<span class="idiff left right"> -ldarshan</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Libs.private: ${darshan_linkopts} ${darshan_libdir} -lfmpich -lmpichcxx -Wl,--start-group -ldarshan -ldarshan-stubs -Wl,--end-group</span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#c67e6a7d13ce6a79bdd2d07c96f35d24aeb2016e"><strong>darshan-runtime/maint/generate-bg-compilers.sh</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Generates compiler scripts for all BG compilers</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/darshan-x.x.x</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nv" style="color: #008080;">BGPATH</span><span class="o" style="font-weight: 600;">=</span>/bgsys/drivers/ppcfloor/comm/xxx/bin</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>compiler_type <span class="k" style="font-weight: 600;">in </span>default fast xl<span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">compiler_path</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">BGPATH</span><span class="p">/xxx/</span><span class="nv" style="color: #008080;">$compiler_type</span><span class="k" style="font-weight: 600;">}</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"> <span class="nv" style="color: #008080;">compiler_opt</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"> <span class="k" style="font-weight: 600;">for </span>compiler <span class="k" style="font-weight: 600;">in</span> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">ls</span> <span class="nv" style="color: #008080;">$compiler_path</span><span class="si" style="color: #d14;">)</span><span class="p">;</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"> <span class="k" style="font-weight: 600;">do</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell"><span class="k" style="font-weight: 600;"> if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nv" style="color: #008080;">$compiler</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s2" style="color: #d14;">"mpich2version"</span> <span class="nt" style="color: #000080;">-a</span> <span class="se" style="color: #d14;">\</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"> <span class="nv" style="color: #008080;">$compiler</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s2" style="color: #d14;">"parkill"</span> <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">mkdir</span> <span class="nt" style="color: #000080;">-p</span> <span class="nv" style="color: #008080;">$PREFIX</span>/bin/<span class="nv" style="color: #008080;">$compiler_type</span></span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*xl.*"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"> <span class="nv" style="color: #008080;">$compiler_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">"fast"</span> <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"> <span class="nv" style="color: #008080;">$compiler_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">"xl"</span> <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">compiler_opt</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"--trim --xl"</span><span class="p">;</span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"> <span class="k" style="font-weight: 600;">fi</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"><span class="k" style="font-weight: 600;"> if</span> <span class="o" style="font-weight: 600;">[</span> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*cxx"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"> <span class="nv" style="color: #008080;">$PREFIX</span>/bin/darshan-gen-cxx.pl <span class="nv" style="color: #008080;">$compiler_opt</span> <span class="nt" style="color: #000080;">--output</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span>/bin/<span class="nv" style="color: #008080;">$compiler_type</span>/<span class="nv" style="color: #008080;">$compiler</span> <span class="nv" style="color: #008080;">$compiler_path</span>/<span class="nv" style="color: #008080;">$compiler</span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="shell"> <span class="k" style="font-weight: 600;">elif</span> <span class="o" style="font-weight: 600;">[</span> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*f77"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*f90"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="shell"> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*f95"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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28
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell"> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*f2003"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="shell"> <span class="nv" style="color: #008080;">$PREFIX</span>/bin/darshan-gen-fortran.pl <span class="nv" style="color: #008080;">$compiler_opt</span> <span class="nt" style="color: #000080;">--output</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span>/bin/<span class="nv" style="color: #008080;">$compiler_type</span>/<span class="nv" style="color: #008080;">$compiler</span> <span class="nv" style="color: #008080;">$compiler_path</span>/<span class="nv" style="color: #008080;">$compiler</span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="shell"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num old old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="shell"> <span class="nv" style="color: #008080;">$PREFIX</span>/bin/darshan-gen-cc.pl <span class="nv" style="color: #008080;">$compiler_opt</span> <span class="nt" style="color: #000080;">--output</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span>/bin/<span class="nv" style="color: #008080;">$compiler_type</span>/<span class="nv" style="color: #008080;">$compiler</span> <span class="nv" style="color: #008080;">$compiler_path</span>/<span class="nv" style="color: #008080;">$compiler</span></span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="shell"> <span class="k" style="font-weight: 600;">fi</span></span>
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33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="shell"><span class="k" style="font-weight: 600;"> fi</span></span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="shell"><span class="k" style="font-weight: 600;"> done </span></span>
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35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#8baa6a300e967537efaaf3814054f0d2201cdcd7"><strong>darshan-runtime/maint/generate-bgq-compilers.sh</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Generates compiler scripts for all BG compilers</span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/soft/perftools/darshan/darshan-x.y.z</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nv" style="color: #008080;">BGPATH</span><span class="o" style="font-weight: 600;">=</span>/bgsys/drivers/ppcfloor/comm/xxx/bin</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>compiler_type <span class="k" style="font-weight: 600;">in </span>xl xl.ndebug xl.legacy xl.legacy.ndebug gcc gcc.legacy<span class="p">;</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">compiler_path</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">BGPATH</span><span class="p">/xxx/</span><span class="nv" style="color: #008080;">$compiler_type</span><span class="k" style="font-weight: 600;">}</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"> <span class="nv" style="color: #008080;">compiler_opt</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"--trim"</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"> <span class="k" style="font-weight: 600;">for </span>compiler <span class="k" style="font-weight: 600;">in</span> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">ls</span> <span class="nv" style="color: #008080;">$compiler_path</span><span class="si" style="color: #d14;">)</span><span class="p">;</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"> <span class="k" style="font-weight: 600;">do</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell"><span class="k" style="font-weight: 600;"> if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nv" style="color: #008080;">$compiler</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s2" style="color: #d14;">"mpich2version"</span> <span class="nt" style="color: #000080;">-a</span> <span class="se" style="color: #d14;">\</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"> <span class="nv" style="color: #008080;">$compiler</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s2" style="color: #d14;">"parkill"</span> <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">mkdir</span> <span class="nt" style="color: #000080;">-p</span> <span class="nv" style="color: #008080;">$PREFIX</span>/wrappers/<span class="nv" style="color: #008080;">$compiler_type</span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nv" style="color: #008080;">$compiler_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">"xl"</span> <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"> <span class="nv" style="color: #008080;">$compiler_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">"xl.ndebug"</span> <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"> <span class="nv" style="color: #008080;">$compiler_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">"xl.legacy"</span> <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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21
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"> <span class="nv" style="color: #008080;">$compiler_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">"xl.legacy.ndebug"</span> <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<td class="diff-line-num old old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
22
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">compiler_opt</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"--trim --xl"</span><span class="p">;</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"> <span class="k" style="font-weight: 600;">fi</span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"><span class="k" style="font-weight: 600;"> if</span> <span class="o" style="font-weight: 600;">[</span> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*cxx"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="shell"> <span class="nv" style="color: #008080;">$PREFIX</span>/bin/darshan-gen-cxx.pl <span class="nv" style="color: #008080;">$compiler_opt</span> <span class="nt" style="color: #000080;">--output</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span>/wrappers/<span class="nv" style="color: #008080;">$compiler_type</span>/<span class="nv" style="color: #008080;">$compiler</span> <span class="nv" style="color: #008080;">$compiler_path</span>/<span class="nv" style="color: #008080;">$compiler</span></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"> <span class="k" style="font-weight: 600;">elif</span> <span class="o" style="font-weight: 600;">[</span> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*f77"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="shell"> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*f90"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell"> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*f95"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="nt" style="color: #000080;">-o</span> <span class="se" style="color: #d14;">\</span></span>
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29
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="shell"> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">expr </span>match <span class="nv" style="color: #008080;">$compiler</span> <span class="s2" style="color: #d14;">".*f2003"</span><span class="si" style="color: #d14;">)</span> <span class="nt" style="color: #000080;">-gt</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="shell"> <span class="nv" style="color: #008080;">$PREFIX</span>/bin/darshan-gen-fortran.pl <span class="nv" style="color: #008080;">$compiler_opt</span> <span class="nt" style="color: #000080;">--output</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span>/wrappers/<span class="nv" style="color: #008080;">$compiler_type</span>/<span class="nv" style="color: #008080;">$compiler</span> <span class="nv" style="color: #008080;">$compiler_path</span>/<span class="nv" style="color: #008080;">$compiler</span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="shell"> <span class="k" style="font-weight: 600;">else</span></span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="shell"> <span class="nv" style="color: #008080;">$PREFIX</span>/bin/darshan-gen-cc.pl <span class="nv" style="color: #008080;">$compiler_opt</span> <span class="nt" style="color: #000080;">--output</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span>/wrappers/<span class="nv" style="color: #008080;">$compiler_type</span>/<span class="nv" style="color: #008080;">$compiler</span> <span class="nv" style="color: #008080;">$compiler_path</span>/<span class="nv" style="color: #008080;">$compiler</span></span>
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33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="shell"> <span class="k" style="font-weight: 600;">fi</span></span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="shell"><span class="k" style="font-weight: 600;"> fi</span></span>
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35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="shell"><span class="k" style="font-weight: 600;"> done </span></span>
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36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span></pre>
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<li id="ec23648d34d0aa2376fa09ced2ecde1f54d4326e">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#ec23648d34d0aa2376fa09ced2ecde1f54d4326e"><strong>darshan-runtime/maint/install-eureka.sh</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/darshan-x.y.z</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">LOGDIR</span><span class="o" style="font-weight: 600;">=</span>/intrepid-fs0/logs/darshan-eureka</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Configure, Make and Install Darshan suite</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> ../</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell">./configure <span class="nt" style="color: #000080;">--with-mem-align</span><span class="o" style="font-weight: 600;">=</span>16 <span class="nt" style="color: #000080;">--with-log-path</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$LOGDIR</span> <span class="nt" style="color: #000080;">--prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span> <span class="nt" style="color: #000080;">--with-jobid-env</span><span class="o" style="font-weight: 600;">=</span>COBALT_JOBID <span class="nv" style="color: #008080;">CFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-O2"</span> <span class="nv" style="color: #008080;">CC</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/mpich2-1.3.1-gnu/bin/mpicc <span class="o" style="font-weight: 600;">&&</span> make <span class="o" style="font-weight: 600;">&&</span> make <span class="nb" style="color: #0086b3;">install</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#2cf1c511494dc18c0fff8ba736957d0cc16bf6dc"><strong>darshan-runtime/maint/install-gadzooks.sh</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/darshan-x.y.z</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">LOGDIR</span><span class="o" style="font-weight: 600;">=</span>/pvfs-surveyor/logs/darshan-gadzooks</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Configure, Make and Install Darshan suite</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell">./configure <span class="nt" style="color: #000080;">--with-mem-align</span><span class="o" style="font-weight: 600;">=</span>16 <span class="nt" style="color: #000080;">--with-log-path</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$LOGDIR</span> <span class="nt" style="color: #000080;">--prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span> <span class="nt" style="color: #000080;">--with-jobid-env</span><span class="o" style="font-weight: 600;">=</span>COBALT_JOBID <span class="nv" style="color: #008080;">CFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-O2"</span> <span class="nv" style="color: #008080;">CC</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/mpich2-1.3.1-gnu/bin/mpicc <span class="o" style="font-weight: 600;">&&</span> make <span class="o" style="font-weight: 600;">&&</span> make <span class="nb" style="color: #0086b3;">install</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#ab52954fd78d0d7dbf8f4df9b1ac8a3833f8c069"><strong>darshan-runtime/maint/install-intrepid.sh</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/darshan-x.y.z</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">LOGDIR</span><span class="o" style="font-weight: 600;">=</span>/intrepid-fs0/logs/darshan/</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#darshan </span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> ../</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell">./configure <span class="nt" style="color: #000080;">--disable-ld-preload</span> <span class="nt" style="color: #000080;">--with-mem-align</span><span class="o" style="font-weight: 600;">=</span>16 <span class="nt" style="color: #000080;">--with-log-path</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$LOGDIR</span> <span class="nt" style="color: #000080;">--prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span> <span class="nt" style="color: #000080;">--with-zlib</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/zlib-1.2.3/ <span class="nt" style="color: #000080;">--with-jobid-env</span><span class="o" style="font-weight: 600;">=</span>COBALT_JOBID <span class="nv" style="color: #008080;">CFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-O2"</span> <span class="nv" style="color: #008080;">CC</span><span class="o" style="font-weight: 600;">=</span>/bgsys/drivers/ppcfloor/comm/default/bin/mpicc <span class="o" style="font-weight: 600;">&&</span> make <span class="o" style="font-weight: 600;">&&</span> make <span class="nb" style="color: #0086b3;">install</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="nb" style="color: #0086b3;">mkdir</span> <span class="nt" style="color: #000080;">-p</span> <span class="nv" style="color: #008080;">$LOGDIR</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="nv" style="color: #008080;">$PREFIX</span>/bin/darshan-mk-log-dirs.pl</span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#849248a7680831f33910b63c92235fb5d04f9d1a"><strong>darshan-runtime/maint/install-surveyor.sh</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/darshan-x.y.z</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">LOGDIR</span><span class="o" style="font-weight: 600;">=</span>/pvfs-surveyor/logs/darshan</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#darshan </span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> ../</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell">./configure <span class="nt" style="color: #000080;">--disable-ld-preload</span> <span class="nt" style="color: #000080;">--with-mem-align</span><span class="o" style="font-weight: 600;">=</span>16 <span class="nt" style="color: #000080;">--with-log-path</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$LOGDIR</span> <span class="nt" style="color: #000080;">--prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span> <span class="nt" style="color: #000080;">--with-zlib</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/zlib-1.2.3/ <span class="nt" style="color: #000080;">--with-jobid-env</span><span class="o" style="font-weight: 600;">=</span>COBALT_JOBID <span class="nv" style="color: #008080;">CFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-O2"</span> <span class="nv" style="color: #008080;">CC</span><span class="o" style="font-weight: 600;">=</span>/bgsys/drivers/ppcfloor/comm/default/bin/mpicc <span class="o" style="font-weight: 600;">&&</span> make <span class="o" style="font-weight: 600;">&&</span> make <span class="nb" style="color: #0086b3;">install</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="nb" style="color: #0086b3;">mkdir</span> <span class="nt" style="color: #000080;">-p</span> <span class="nv" style="color: #008080;">$LOGDIR</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="nv" style="color: #008080;">$PREFIX</span>/bin/darshan-mk-log-dirs.pl</span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#939fd884ab9aec2c17c550a0321329ee5e79bd12"><strong>darshan-runtime/maint/upgrade-eureka.sh</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/darshan-x.y.z</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">LOGDIR</span><span class="o" style="font-weight: 600;">=</span>/intrepid-fs0/logs/darshan-eureka</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Configure, Make and Install Darshan suite</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> ../</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell">./configure <span class="nt" style="color: #000080;">--with-mem-align</span><span class="o" style="font-weight: 600;">=</span>16 <span class="nt" style="color: #000080;">--with-log-path</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$LOGDIR</span> <span class="nt" style="color: #000080;">--prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span> <span class="nt" style="color: #000080;">--with-jobid-env</span><span class="o" style="font-weight: 600;">=</span>COBALT_JOBID <span class="nv" style="color: #008080;">CFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-O2"</span> <span class="nv" style="color: #008080;">CC</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/mpich2-1.3.1-gnu/bin/mpicc <span class="o" style="font-weight: 600;">&&</span> make <span class="o" style="font-weight: 600;">&&</span> make <span class="nb" style="color: #0086b3;">install</span></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#1c6cdc71b05b08859293e9a16c21c6b27d52b815"><strong>darshan-runtime/maint/upgrade-gadzooks.sh</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/darshan-x.y.z</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">LOGDIR</span><span class="o" style="font-weight: 600;">=</span>/pvfs-surveyor/logs/darshan-gadzooks</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Configure, Make and Install Darshan suite</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> ../</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell">./configure <span class="nt" style="color: #000080;">--with-mem-align</span><span class="o" style="font-weight: 600;">=</span>16 <span class="nt" style="color: #000080;">--with-log-path</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$LOGDIR</span> <span class="nt" style="color: #000080;">--prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span> <span class="nt" style="color: #000080;">--with-jobid-env</span><span class="o" style="font-weight: 600;">=</span>COBALT_JOBID <span class="nv" style="color: #008080;">CFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-O2"</span> <span class="nv" style="color: #008080;">CC</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/mpich2-1.3.1-gnu/bin/mpicc <span class="o" style="font-weight: 600;">&&</span> make <span class="o" style="font-weight: 600;">&&</span> make <span class="nb" style="color: #0086b3;">install</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#dcfafd749cd4ab680e0c081e41cfa51fc620435a"><strong>darshan-runtime/maint/upgrade-intrepid.sh</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/darshan-x.y.z</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">LOGDIR</span><span class="o" style="font-weight: 600;">=</span>/intrepid-fs0/logs/darshan/</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#darshan </span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> ../</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell">./configure <span class="nt" style="color: #000080;">--disable-ld-preload</span> <span class="nt" style="color: #000080;">--with-mem-align</span><span class="o" style="font-weight: 600;">=</span>16 <span class="nt" style="color: #000080;">--with-log-path</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$LOGDIR</span> <span class="nt" style="color: #000080;">--prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span> <span class="nt" style="color: #000080;">--with-zlib</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/zlib-1.2.3/ <span class="nt" style="color: #000080;">--with-jobid-env</span><span class="o" style="font-weight: 600;">=</span>COBALT_JOBID <span class="nv" style="color: #008080;">CFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-O2"</span> <span class="nv" style="color: #008080;">CC</span><span class="o" style="font-weight: 600;">=</span>/bgsys/drivers/ppcfloor/comm/default/bin/mpicc <span class="o" style="font-weight: 600;">&&</span> make <span class="o" style="font-weight: 600;">&&</span> make <span class="nb" style="color: #0086b3;">install</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#6387a10dce0a3a97b891ff052a2eb790206e591f"><strong>darshan-runtime/maint/upgrade-surveyor.sh</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/darshan-x.y.z</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">LOGDIR</span><span class="o" style="font-weight: 600;">=</span>/pvfs-surveyor/logs/darshan</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#darshan </span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> ../</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell">./configure <span class="nt" style="color: #000080;">--disable-ld-preload</span> <span class="nt" style="color: #000080;">--with-mem-align</span><span class="o" style="font-weight: 600;">=</span>16 <span class="nt" style="color: #000080;">--with-log-path</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$LOGDIR</span> <span class="nt" style="color: #000080;">--prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$PREFIX</span> <span class="nt" style="color: #000080;">--with-zlib</span><span class="o" style="font-weight: 600;">=</span>/soft/apps/zlib-1.2.3/ <span class="nt" style="color: #000080;">--with-jobid-env</span><span class="o" style="font-weight: 600;">=</span>COBALT_JOBID <span class="nv" style="color: #008080;">CFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-O2"</span> <span class="nv" style="color: #008080;">CC</span><span class="o" style="font-weight: 600;">=</span>/bgsys/drivers/ppcfloor/comm/default/bin/mpicc <span class="o" style="font-weight: 600;">&&</span> make <span class="o" style="font-weight: 600;">&&</span> make <span class="nb" style="color: #0086b3;">install</span></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#9db75b283e74b90f346fd4721cf8525458084b6a"><strong>darshan-runtime/share/mpi-profile/darshan-bg-cc.conf.in</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Example Darshan profiling configuration file for MPICH.</span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">DARSHAN_PREFIX</span><span class="o" style="font-weight: 600;">=</span>@prefix@</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Check to see if user explicitly specified dynamic linking options</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$CFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck1</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$LDFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck2</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">allargs</span><span class="p">[@]</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> | <span class="nb" style="color: #0086b3;">grep</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck3</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Skip profiling if we know that dynamic linking is in use. See LD_PRELOAD </span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># method instead.</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck1</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck2</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck3</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library </span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries to include after the MPI library </span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_POSTLIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--post-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># C preprocessor arguments for any include files For example, to add</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/include to the include path and the library libmyprof.a in</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/lib to the link step, you could create the file myprof.conf with the</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># lines </span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># PROFILE_INCPATHS</span></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#326f77fc099846836ac9b9cc9b558b19ef234489"><strong>darshan-runtime/share/mpi-profile/darshan-bg-cxx.conf.in</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Example Darshan profiling configuration file for MPICH.</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">DARSHAN_PREFIX</span><span class="o" style="font-weight: 600;">=</span>@prefix@</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Check to see if user explicitly specified dynamic linking options</span></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$CFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck1</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$LDFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck2</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">allargs</span><span class="p">[@]</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> | <span class="nb" style="color: #0086b3;">grep</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck3</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell"></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Skip profiling if we know that dynamic linking is in use. See LD_PRELOAD </span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># method instead.</span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck1</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck2</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck3</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># NOTE: there is something fragile here. We are relying on the BG mpicxx script to set a </span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># variable called $cxxlibs to the name of the libmpichcxx variant that we need in order</span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># to intercept pmpi calls</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library </span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$cxxlibs</span><span class="s2" style="color: #d14;"> </span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries to include after the MPI library </span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_POSTLIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--post-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># C preprocessor arguments for any include files For example, to add</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/include to the include path and the library libmyprof.a in</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/lib to the link step, you could create the file myprof.conf with the</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># lines </span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># PROFILE_INCPATHS</span></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#510acbe31aa471cfe4dbb8e09e97fecfad4b2a39"><strong>darshan-runtime/share/mpi-profile/darshan-bg-f.conf.in</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Example Darshan profiling configuration file for MPICH.</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">DARSHAN_PREFIX</span><span class="o" style="font-weight: 600;">=</span>@prefix@</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Check to see if user explicitly specified dynamic linking options</span></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$CFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck1</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$LDFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck2</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">allargs</span><span class="p">[@]</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> | <span class="nb" style="color: #0086b3;">grep</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck3</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell"></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># try to detect name of libmpichf77 or libmpichf90 library needed for pmpi</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># - these may be named with different suffixes to match the compiler version</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"><span class="nv" style="color: #008080;">D_MPI_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$LIBS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\-</span><span class="s2" style="color: #d14;">lmpichf</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">S</span><span class="se" style="color: #d14;">\+\-\\</span><span class="s2" style="color: #d14;">S</span><span class="se" style="color: #d14;">\+</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-o</span><span class="sb" style="color: #d14;">`</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Skip profiling if we know that dynamic linking is in use. See LD_PRELOAD </span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># method instead.</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck1</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck2</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck3</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library </span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$D_MPI_PRELIB</span><span class="s2" style="color: #d14;"> </span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries to include after the MPI library </span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_POSTLIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--post-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># C preprocessor arguments for any include files For example, to add</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/include to the include path and the library libmyprof.a in</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/lib to the link step, you could create the file myprof.conf with the</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># lines </span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># PROFILE_INCPATHS</span></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#4d562e13a536ff6b586d2ff1d71ad760fe93e005"><strong>darshan-runtime/share/mpi-profile/darshan-cc-static.conf.in</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Example Darshan profiling configuration file for MPICH when using static</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># linking.</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">DARSHAN_PREFIX</span><span class="o" style="font-weight: 600;">=</span>@prefix@</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Libraries to include after the MPI library</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_POSTLIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--post-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#23cfd90a7d3df22ea360a019bd93017dfa6dc3ec"><strong>darshan-runtime/share/mpi-profile/darshan-cc.conf.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,27 +3,5 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Example Darshan profiling configuration file for MPICH.</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">DARSHAN_PREFIX</span><span class="o" style="font-weight: 600;">=</span>@prefix@</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Check to see if user explicitly specified dynamic linking options</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$CFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck1</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$LDFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck2</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">allargs</span><span class="p">[@]</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> | <span class="nb" style="color: #0086b3;">grep</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck3</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Skip profiling if we know that dynamic linking is in use. See LD_PRELOAD </span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># method instead.</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck1</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck2</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck3</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library </span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries to include after the MPI library </span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_POSTLIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--post-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># C preprocessor arguments for any include files For example, to add</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/include to the include path and the library libmyprof.a in</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/lib to the link step, you could create the file myprof.conf with the</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># lines </span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># PROFILE_INCPATHS</span></span></pre>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--dyn-ld-flags</span><span class="sb" style="color: #d14;">`</span></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#2e2301aac07a6a9505135c762e8cf7dbc321c83d"><strong>darshan-runtime/share/mpi-profile/darshan-cxx-static.conf.in</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Example Darshan profiling configuration file for MPICH when statically</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># linking.</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">DARSHAN_PREFIX</span><span class="o" style="font-weight: 600;">=</span>@prefix@</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="nv" style="color: #008080;">MPICH_LIB_OLD</span><span class="o" style="font-weight: 600;">=</span>@MPICH_LIB_OLD@</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nv" style="color: #008080;">$MPICH_LIB_OLD</span> <span class="nt" style="color: #000080;">-eq</span> 1 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-lmpichcxx </span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;">else</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-lmpicxx </span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Libraries to include after the MPI library</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_POSTLIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--post-ld-flags</span><span class="sb" style="color: #d14;">`</span></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#39ef5f41d0e904620199f1496df23cc28c2a5941"><strong>darshan-runtime/share/mpi-profile/darshan-cxx.conf.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,35 +2,8 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Example Darshan profiling configuration file for MPICH.</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="nv" style="color: #008080;">DARSHAN_PREFIX</span><span class="o" style="font-weight: 600;">=</span>@prefix@</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nv" style="color: #008080;">MPICH_LIB_OLD</span><span class="o" style="font-weight: 600;">=</span>@MPICH_LIB_OLD@</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Check to see if user explicitly specified dynamic linking options</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$CFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck1</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$LDFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck2</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">allargs</span><span class="p">[@]</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> | <span class="nb" style="color: #0086b3;">grep</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck3</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Skip profiling if we know that dynamic linking is in use. See LD_PRELOAD </span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># method instead.</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck1</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck2</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck3</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library </span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nv" style="color: #008080;">$MPICH_LIB_OLD</span> <span class="nt" style="color: #000080;">-eq</span> 1 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-lmpichcxx </span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"> <span class="k" style="font-weight: 600;">else</span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-lmpicxx </span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"> <span class="k" style="font-weight: 600;">fi</span></span>
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27
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries to include after the MPI library </span></span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_POSTLIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--post-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--dyn-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="shell"></span></pre>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># C preprocessor arguments for any include files For example, to add</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/include to the include path and the library libmyprof.a in</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/lib to the link step, you could create the file myprof.conf with the</span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># lines </span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># PROFILE_INCPATHS</span></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#220cfe94536d7cef36cfd199a835254c64cfb28e"><strong>darshan-runtime/share/mpi-profile/darshan-f-static.conf.in</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Example Darshan profiling configuration file for MPICH.</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">DARSHAN_PREFIX</span><span class="o" style="font-weight: 600;">=</span>@prefix@</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="nv" style="color: #008080;">MPICH_LIB_OLD</span><span class="o" style="font-weight: 600;">=</span>@MPICH_LIB_OLD@</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nv" style="color: #008080;">$MPICH_LIB_OLD</span> <span class="nt" style="color: #000080;">-eq</span> 1 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-lfmpich </span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;">else</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-lmpifort </span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Libraries to include after the MPI library</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_POSTLIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--post-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"></span></pre>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/405131f9acd5e6448f573b203745b39fb8802ac9...7715697e435be5acdfdf0b4973bb4c62bcaa383c#782c4b0ba4602576f400f7d1320feaa8f3e0c375"><strong>darshan-runtime/share/mpi-profile/darshan-f.conf.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,33 +4,5 @@</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">DARSHAN_PREFIX</span><span class="o" style="font-weight: 600;">=</span>@prefix@</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="nv" style="color: #008080;">MPICH_LIB_OLD</span><span class="o" style="font-weight: 600;">=</span>@MPICH_LIB_OLD@</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Check to see if user explicitly specified dynamic linking options</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$CFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck1</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$LDFLAGS</span> |grep <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck2</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">allargs</span><span class="p">[@]</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> | <span class="nb" style="color: #0086b3;">grep</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">-dynamic"</span> <span class="o" style="font-weight: 600;">></span>& /dev/null</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell"><span class="nv" style="color: #008080;">dyncheck3</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Skip profiling if we know that dynamic linking is in use. See LD_PRELOAD </span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># method instead.</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck1</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck2</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$dyncheck3</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-ne</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries (and paths) to include before the MPI library </span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nv" style="color: #008080;">$MPICH_LIB_OLD</span> <span class="nt" style="color: #000080;">-eq</span> 1 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-lfmpich </span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"> <span class="k" style="font-weight: 600;">else</span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-lmpifort </span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--pre-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"> <span class="k" style="font-weight: 600;">fi</span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Libraries to include after the MPI library </span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_POSTLIB</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--post-ld-flags</span><span class="sb" style="color: #d14;">`</span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># C preprocessor arguments for any include files For example, to add</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/include to the include path and the library libmyprof.a in</span></span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># /usr/local/myprof/lib to the link step, you could create the file myprof.conf with the</span></span>
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35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># lines </span></span>
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36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># PROFILE_INCPATHS</span></span></pre>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">PROFILE_PRELIB</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="sb" style="color: #d14;">`</span><span class="nv" style="color: #008080;">$DARSHAN_PREFIX</span>/bin/darshan-config <span class="nt" style="color: #000080;">--dyn-ld-flags</span><span class="sb" style="color: #d14;">`</span><span class="s2" style="color: #d14;">"</span></span></pre>
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