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<h3>
Shane Snyder pushed to branch carns/dev-dyn-link-updates
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
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<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/a1a905d34b1afc88d20ec3a17af13a0e5a01cb3b">a1a905d3</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2020-03-26T22:56:39-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">adjust section strucutre + fix typos
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#c1f1275094e9957965ea40cf5852335b4164fd05">
darshan-runtime/doc/darshan-runtime.txt
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<h4>Changes:</h4>
<li id="c1f1275094e9957965ea40cf5852335b4164fd05">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/a1a905d34b1afc88d20ec3a17af13a0e5a01cb3b#c1f1275094e9957965ea40cf5852335b4164fd05"><strong>darshan-runtime/doc/darshan-runtime.txt</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -147,7 +147,7 @@ administrators group</td>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext">* recursively set the setgid bit on the log directories</span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext">====</span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext">== Instrumenting <span class="idiff left right">MPI </span>applications</span>
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext">== Instrumenting applications</span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext">[NOTE]</span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext">====</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -161,14 +161,14 @@ instrument applications at compile time.</td>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext">=== Option 1: Instrumenting MPI applications at compile time</span>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext">This method is applicable to C, Fortran, and C++ applications</span>
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext">This method is applicable to C, Fortran, and C++ <span class="idiff left right">MPI </span>applications</span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext">(regardless of whether they are static or dynamicly linked) and is the most</span>
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<td class="diff-line-num new_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext">straightforward method to apply transparently system-wide. It works by</span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext">injecting additional libraries and options into the linker command line to</span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext">intercept relevant I/O calls.</span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext">On Cray platforms you can enable the compile time instrumentation by simply</span>
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext">loading the <span class="idiff left right">d</span>arshan module. It can then be enabled for all users by placing</span>
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext">loading the <span class="idiff left right">D</span>arshan module. It can then be enabled for all users by placing</span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext">that module in the default environment. As of Darshan 3.2.0 this will</span>
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext">instrument both static and dynamic executables, while in previous versions</span>
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext">of Darshan this was only sufficient for static executables. See the Cray</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -386,13 +386,13 @@ reflect the specifics of your system.</td>
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<pre style="margin: 0;"> <span id="LC386" class="line" lang="plaintext"></span>
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387
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<pre style="margin: 0;"> <span id="LC387" class="line" lang="plaintext">This section describes how to compile and install Darshan,</span>
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388
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<pre style="margin: 0;"> <span id="LC388" class="line" lang="plaintext">as well as how to use a software module to enable and disable Darshan</span>
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389
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<pre style="margin: 0;">-<span id="LC389" class="line" lang="plaintext">instrumentation.</span>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="plaintext">instrumentation<span class="idiff left right"> on Cray systems</span>.</span>
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390
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<pre style="margin: 0;"> <span id="LC390" class="line" lang="plaintext"></span>
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391
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<pre style="margin: 0;"> <span id="LC391" class="line" lang="plaintext">==== Building and installing Darshan</span>
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<pre style="margin: 0;"> <span id="LC392" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC393" class="line" lang="plaintext">Please set your environment to use the GNU programming environment before</span>
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394
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<pre style="margin: 0;"> <span id="LC394" class="line" lang="plaintext">configuring or compiling Darshan. Although Darshan can be built with a</span>
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395
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<pre style="margin: 0;">-<span id="LC395" class="line" lang="plaintext">variety of compilers, the GNU compiler<span class="idiff left right">s are</span> recommended because it will</span>
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="plaintext">variety of compilers, the GNU compiler<span class="idiff left right"> is</span> recommended because it will</span>
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396
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<pre style="margin: 0;"> <span id="LC396" class="line" lang="plaintext">produce a Darshan library that is interoperable with the widest range</span>
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397
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<pre style="margin: 0;"> <span id="LC397" class="line" lang="plaintext">of compilers and linkers. On most Cray systems you can enable the GNU</span>
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<pre style="margin: 0;"> <span id="LC398" class="line" lang="plaintext">programming environment with a command similar to "module swap PrgEnv-intel</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -472,7 +472,7 @@ command:</td>
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<pre style="margin: 0;"> <span id="LC472" class="line" lang="plaintext">module use /soft/darshan-2.2.3/share/craype-<VERSION>/modulefiles</span>
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="plaintext">----</span>
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<pre style="margin: 0;"> <span id="LC474" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="plaintext">From this point, Darshan instrumenation can be enabled for all future</span>
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475
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="plaintext">From this point, Darshan instrumen<span class="idiff left right">t</span>ation can be enabled for all future</span>
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476
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<pre style="margin: 0;"> <span id="LC476" class="line" lang="plaintext">application compilations by running "module load darshan".</span>
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477
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<pre style="margin: 0;"> <span id="LC477" class="line" lang="plaintext"></span>
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478
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<pre style="margin: 0;"> <span id="LC478" class="line" lang="plaintext">=== Linux clusters using MPICH</span>
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