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<h3>
Shane Snyder pushed to branch master
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/60dc97f3357e4bdbed168b10dde67f4db63fef31">60dc97f3</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2019-01-18T19:22:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">updated changelog for 3.1.7
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</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/29c044e67b34826fdacb89b383203e2e872db157">29c044e6</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2019-01-18T20:38:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">updated docs for new POSIX/STDIO operations
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<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/e023abffd5e46dcf907adacb21a7301d64a157e2">e023abff</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2019-01-18T20:45:53Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">more doc updates
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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<li class="file-stats">
<a href="#3423e139476e9a4fdbde4367df3497a215142913">
darshan-posix-log-format.h
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<li class="file-stats">
<a href="#9e10861554d6b388b76fe5fabbafb8e3958cf29a">
darshan-stdio-log-format.h
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<li class="file-stats">
<a href="#00fda3684246660c53077955f537d75b3aa90000">
darshan-util/doc/darshan-util.txt
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<h4>Changes:</h4>
<li id="00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/3a5d82c61c524e4856065a401ff146d68b39953c...e023abffd5e46dcf907adacb21a7301d64a157e2#00fe7828d56d7a3ee4030d6cea057cf13f50e70c"><strong>ChangeLog</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,6 +11,9 @@ Darshan-3.1.7</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> darshan-job-summary.pl when both posix and stdio access is present</span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">* added wrapper for __open_2(), bug reported by Cormac Garvey in which open</span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> calls are not intercepted with some versions of glibc/gcc</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">* added an instrumentation module for the MDHIM key/val storage system</span>
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<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">* added support for properly instrumenting dup(), fileno(), fdopen(), and</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> rename() calls</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Darshan-3.1.6</span>
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">=============</span>
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<li id="3423e139476e9a4fdbde4367df3497a215142913">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/3a5d82c61c524e4856065a401ff146d68b39953c...e023abffd5e46dcf907adacb21a7301d64a157e2#3423e139476e9a4fdbde4367df3497a215142913"><strong>darshan-posix-log-format.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,7 +10,7 @@</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define DARSHAN_POSIX_VER 4</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="c"></span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define POSIX_COUNTERS \</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> </span><span class="cm" style="color: #998; font-style: italic;">/* count of posix opens */</span><span class="cp" style="color: #999; font-weight: 600;">\</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> </span><span class="cm" style="color: #998; font-style: italic;">/* count of posix opens <span class="idiff left right">(INCLUDING fileno and dup operations) </span>*/</span><span class="cp" style="color: #999; font-weight: 600;">\</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> X(POSIX_OPENS) \</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> </span><span class="cm" style="color: #998; font-style: italic;">/* count of number of filenos */</span><span class="cp" style="color: #999; font-weight: 600;">\</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> X(POSIX_FILENOS) \</span></span>
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<li id="9e10861554d6b388b76fe5fabbafb8e3958cf29a">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/3a5d82c61c524e4856065a401ff146d68b39953c...e023abffd5e46dcf907adacb21a7301d64a157e2#9e10861554d6b388b76fe5fabbafb8e3958cf29a"><strong>darshan-stdio-log-format.h</strong></a>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define DARSHAN_STDIO_VER 2</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define STDIO_COUNTERS \</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> </span><span class="cm" style="color: #998; font-style: italic;">/* count of fopens */</span><span class="cp" style="color: #999; font-weight: 600;">\</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> </span><span class="cm" style="color: #998; font-style: italic;">/* count of fopens <span class="idiff left right">(INCLUDING fdopen operations) </span>*/</span><span class="cp" style="color: #999; font-weight: 600;">\</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> X(STDIO_OPENS) \</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> </span><span class="cm" style="color: #998; font-style: italic;">/* count of fdopens */</span><span class="cp" style="color: #999; font-weight: 600;">\</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> X(STDIO_FDOPENS) \</span></span>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/3a5d82c61c524e4856065a401ff146d68b39953c...e023abffd5e46dcf907adacb21a7301d64a157e2#00fda3684246660c53077955f537d75b3aa90000"><strong>darshan-util/doc/darshan-util.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -234,7 +234,9 @@ otherwise noted, counters include all variants of the call in question, such as</td>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext">[cols="40%,60%",options="header"]</span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext">|====</span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext">| counter name | description</span>
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="plaintext">| POSIX_OPENS | Count of how many times the file was opened</span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext">| POSIX_OPENS | Count of how many times the file was opened (INCLUDING `fileno` and `dup` operations)</span>
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext">| POSIX_FILENOS| Count of POSIX fileno operations</span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext">| POSIX_DUPS| Count of POSIX dup operations</span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext">| POSIX_READS | Count of POSIX read operations</span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext">| POSIX_WRITES | Count of POSIX write operations</span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext">| POSIX_SEEKS | Count of POSIX seek operations</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -242,6 +244,9 @@ otherwise noted, counters include all variants of the call in question, such as</td>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext">| POSIX_MMAPS | Count of POSIX mmap operations</span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext">| POSIX_FSYNCS | Count of POSIX fsync operations</span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext">| POSIX_FDSYNCS | Count of POSIX fdatasync operations</span>
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="plaintext">| POSIX_RENAME_SOURCES| Number of times this file was the source of a rename operation</span>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext">| POSIX_RENAME_TARGETS| Number of times this file was the target of a rename operation</span>
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext">| POSIX_RENAMED_FROM | If this file was a rename target, the Darshan record ID of the first rename source</span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext">| POSIX_MODE | Mode that the file was last opened in</span>
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext">| POSIX_BYTES_READ | Total number of bytes that were read from the file</span>
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext">| POSIX_BYTES_WRITTEN | Total number of bytes written to the file</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -314,12 +319,8 @@ value of 1 MiB for optimal file alignment.</td>
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<pre style="margin: 0;"> <span id="LC319" class="line" lang="plaintext">| MPIIO_FASTEST_RANK_BYTES | The number of bytes transferred by the rank with smallest time spent in MPI I/O</span>
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<pre style="margin: 0;"> <span id="LC320" class="line" lang="plaintext">| MPIIO_SLOWEST_RANK | The MPI rank with largest time spent in MPI I/O</span>
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<pre style="margin: 0;"> <span id="LC321" class="line" lang="plaintext">| MPIIO_SLOWEST_RANK_BYTES | The number of bytes transferred by the rank with the largest time spent in MPI I/O</span>
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<pre style="margin: 0;">-<span id="LC317" class="line" lang="plaintext">| MPIIO_F_OPEN_TIMESTAMP | Timestamp of first time that the file was opened at MPI level</span>
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<pre style="margin: 0;">-<span id="LC318" class="line" lang="plaintext">| MPIIO_F_READ_START_TIMESTAMP | Timestamp that the first MPI read operation began</span>
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<pre style="margin: 0;">-<span id="LC319" class="line" lang="plaintext">| MPIIO_F_WRITE_START_TIMESTAMP | Timestamp that the first MPI write operation begin</span>
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="plaintext">| MPIIO_F_READ_END_TIMESTAMP | Timestamp that the last MPI read operation ended</span>
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<pre style="margin: 0;">-<span id="LC321" class="line" lang="plaintext">| MPIIO_F_WRITE_END_TIMESTAMP | Timestamp that the last MPI write operation ended</span>
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<pre style="margin: 0;">-<span id="LC322" class="line" lang="plaintext">| MPIIO_F_CLOSE_TIMESTAMP | Timestamp of the last time that the file was closed at MPI level</span>
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="plaintext">| MPIIO_F_*_START_TIMESTAMP | Timestamp that the first MPIIO file open/read/write/close operation began</span>
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="plaintext">| MPIIO_F_*_END_TIMESTAMP | Timestamp that the last MPIIO file open/read/write/close operation ended</span>
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<pre style="margin: 0;"> <span id="LC324" class="line" lang="plaintext">| MPIIO_READ_TIME | Cumulative time spent reading at MPI level</span>
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<pre style="margin: 0;"> <span id="LC325" class="line" lang="plaintext">| MPIIO_WRITE_TIME | Cumulative time spent write and sync at MPI level</span>
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<pre style="margin: 0;"> <span id="LC326" class="line" lang="plaintext">| MPIIO_META_TIME | Cumulative time spent in open and close at MPI level</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -336,7 +337,8 @@ value of 1 MiB for optimal file alignment.</td>
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<pre style="margin: 0;"> <span id="LC337" class="line" lang="plaintext">[cols="40%,60%",options="header"]</span>
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<pre style="margin: 0;"> <span id="LC338" class="line" lang="plaintext">|====</span>
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<pre style="margin: 0;"> <span id="LC339" class="line" lang="plaintext">| counter name | description</span>
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<pre style="margin: 0;">-<span id="LC339" class="line" lang="plaintext">| STDIO_OPENS | Count of how many times the file was opened using the stdio interface (e.g., `fopen()`)</span>
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="plaintext">| STDIO_OPENS | Count of stdio file open operations (INCLUDING `fdopen` operations)</span>
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="plaintext">| STDIO_FDOPENS| Count of stdio fdopen operations</span>
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342
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<pre style="margin: 0;"> <span id="LC342" class="line" lang="plaintext">| STDIO_READS | Count of stdio read operations</span>
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343
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<pre style="margin: 0;"> <span id="LC343" class="line" lang="plaintext">| STDIO_WRITES | Count of stdio write operations</span>
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342
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344
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="plaintext">| STDIO_SEEKS | Count of stdio seek operations</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -365,8 +367,8 @@ value of 1 MiB for optimal file alignment.</td>
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<pre style="margin: 0;"> <span id="LC367" class="line" lang="plaintext">|====</span>
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366
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368
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<pre style="margin: 0;"> <span id="LC368" class="line" lang="plaintext">| counter name | description</span>
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367
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369
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<pre style="margin: 0;"> <span id="LC369" class="line" lang="plaintext">| HDF5_OPENS | Count of HDF5 opens</span>
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368
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<pre style="margin: 0;">-<span id="LC368" class="line" lang="plaintext">| HDF5_F_<span class="idiff left right">OPEN_TIMESTAMP | Timestamp of first time that the file was opened at HDF5 level</span></span>
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369
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<pre style="margin: 0;">-<span id="LC369" class="line" lang="plaintext">| HDF5_F_<span class="idiff left right">CLOSE_TIMESTAMP | Timestamp of the last time that the file was closed at HDF5 level</span></span>
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370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext">| HDF5_F_<span class="idiff left right">*_START_TIMESTAMP | Timestamp that the first HDF5 file open/close operation began</span></span>
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371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="plaintext">| HDF5_F_<span class="idiff left right">*_END_TIMESTAMP | Timestamp that the last HDF5 file open/close operation ended</span></span>
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372
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<pre style="margin: 0;"> <span id="LC372" class="line" lang="plaintext">|====</span>
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373
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<pre style="margin: 0;"> <span id="LC373" class="line" lang="plaintext"></span>
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372
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374
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<pre style="margin: 0;"> <span id="LC374" class="line" lang="plaintext">.PnetCDF module</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -375,8 +377,8 @@ value of 1 MiB for optimal file alignment.</td>
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375
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<pre style="margin: 0;"> <span id="LC377" class="line" lang="plaintext">| counter name | description</span>
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376
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378
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<pre style="margin: 0;"> <span id="LC378" class="line" lang="plaintext">| PNETCDF_INDEP_OPENS | Count of PnetCDF independent opens</span>
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377
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379
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<pre style="margin: 0;"> <span id="LC379" class="line" lang="plaintext">| PNETCDF_COLL_OPENS | Count of PnetCDF collective opens</span>
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<pre style="margin: 0;">-<span id="LC378" class="line" lang="plaintext">| PNETCDF_F_<span class="idiff left right">OPEN_TIMESTAMP | Timestamp of first time that the file was opened at PnetCDF level</span></span>
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379
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<pre style="margin: 0;">-<span id="LC379" class="line" lang="plaintext">| PNETCDF_F_<span class="idiff left right">CLOSE_TIMESTAMP | Timestamp of the last time that the file was closed at PnetCDF level</span></span>
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext">| PNETCDF_F_<span class="idiff left right">*_START_TIMESTAMP | Timestamp that the first PNETCDF file open/close operation began</span></span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext">| PNETCDF_F_<span class="idiff left right">*_END_TIMESTAMP | Timestamp that the last PNETCDF file open/close operation ended</span></span>
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380
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382
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="plaintext">|====</span>
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381
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383
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<pre style="margin: 0;"> <span id="LC383" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="plaintext">===== Additional modules </span>
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