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<h3>
Shane Snyder pushed to branch master
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/615f539696baa0866fa43495a252243b9f601d6e">615f5396</a></strong>
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<span>by Phil Carns</span>
<i>at 2018-04-02T16:59:35-04:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">omit outputting with old-style fopen counters
- these cannot be easily translated into Darshan 3.1.x format
- fixes #241
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<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/b4ec58405651a594e2837a100fc4d68419623dea">b4ec5840</a></strong>
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<span>by Shane Snyder</span>
<i>at 2018-06-11T15:22:34-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'master' into 'issue-241-fopen-upconvert'
# Conflicts:
# ChangeLog</pre>
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<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/1980d236545c70a1cdaad649b8bd0846b9e42dbc">1980d236</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2018-06-11T15:25:47-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add another comment for more details
</pre>
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<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/2c40940ff465c5d0822cb099e8273102d30e2748">2c40940f</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2018-06-11T15:26:32-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'issue-241-fopen-upconvert' into 'master'
omit outputting with old-style fopen counters
Closes #241
See merge request darshan/darshan!22</pre>
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<h4>2 changed files:</h4>
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<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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<a href="#90b79b66961f50957142f2f4645b6dc9865f960d">
darshan-util/darshan-posix-logutils.c
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<h4>Changes:</h4>
<li id="00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/81683bb50128ef220a8be8d52fa6d85cbb686ed6...2c40940ff465c5d0822cb099e8273102d30e2748#00fe7828d56d7a3ee4030d6cea057cf13f50e70c"><strong>ChangeLog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,6 +4,9 @@ Darshan Release Change Log</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Darshan-3.1.7</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">=============</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">* bug fix for darshan-parser backwards compatibility: Darshan logs generated</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> by Darshan versions prior to 3.1.0 may have included stdio counters that</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> were not properly up-converted. Reported by Teng Wang.</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">* bug fix to MiB reported in I/O performance estimate of</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> darshan-job-summary.pl when both posix and stdio access is present</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<li id="90b79b66961f50957142f2f4645b6dc9865f960d">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/81683bb50128ef220a8be8d52fa6d85cbb686ed6...2c40940ff465c5d0822cb099e8273102d30e2748#90b79b66961f50957142f2f4645b6dc9865f960d"><strong>darshan-util/darshan-posix-logutils.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -86,13 +86,27 @@ static int darshan_log_get_posix_file(darshan_fd fd, void** posix_buf_p)</td>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mod_ver</span><span class="p">[</span><span class="n" style="color: #333;">DARSHAN_POSIX_MOD</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="c"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="c"> <span class="n" style="color: #333;">rec_len</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">DARSHAN_POSIX_FILE_SIZE_1</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="c"> <span class="n" style="color: #333;">ret</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">darshan_log_get_mod</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="p">,</span> <span class="n" style="color: #333;">DARSHAN_POSIX_MOD</span><span class="p">,</span> <span class="n" style="color: #333;">scratch</span><span class="p">,</span> <span class="n" style="color: #333;">rec_len</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">fopen_counter</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="c"> </span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* This version of the posix module had some stdio counters</span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * mixed in with the posix counters. If the fopen counters are</span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * 0, then we can simply update the record format to skip those</span></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * counters. If the fopen counters are non-zero, then we omit</span></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * the entire record because there is no clean way to properly</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * up-convert it.</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="c"> <span class="n" style="color: #333;">dest_p</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">scratch</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">darshan_base_record</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> </span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="c"> <span class="p">(</span><span class="mi" style="color: #099;">6</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int64_t</span><span class="p">)));</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="c"> <span class="n" style="color: #333;">fopen_counter</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int64_t</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">dest_p</span><span class="p">;</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="c"> <span class="k" style="font-weight: 600;">do</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="c"> <span class="p">{</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* pull POSIX records until we find one that doesn't have STDIO data */</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="c"> <span class="n" style="color: #333;">ret</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">darshan_log_get_mod</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="p">,</span> <span class="n" style="color: #333;">DARSHAN_POSIX_MOD</span><span class="p">,</span> <span class="n" style="color: #333;">scratch</span><span class="p">,</span> <span class="n" style="color: #333;">rec_len</span><span class="p">);</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">while</span><span class="p">(</span><span class="n" style="color: #333;">ret</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">rec_len</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">fopen_counter</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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90
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">ret</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">rec_len</span><span class="p">)</span></span>
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91
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="c"> <span class="k" style="font-weight: 600;">goto</span> <span class="n" style="color: #333;">exit</span><span class="p">;</span></span>
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92
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="c"></span>
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93
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* upconvert version 1 to version 2 in-place */</span></span>
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94
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="c"> <span class="n" style="color: #333;">dest_p</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">scratch</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">darshan_base_record</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> </span>
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95
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="c"> <span class="p">(</span><span class="mi" style="color: #099;">6</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int64_t</span><span class="p">)));</span></span>
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96
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="c"> <span class="n" style="color: #333;">src_p</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dest_p</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="mi" style="color: #099;">4</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int64_t</span><span class="p">));</span></span>
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97
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="c"> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rec_len</span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="n" style="color: #333;">src_p</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">scratch</span><span class="p">);</span></span>
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98
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="c"> <span class="n" style="color: #333;">memmove</span><span class="p">(</span><span class="n" style="color: #333;">dest_p</span><span class="p">,</span> <span class="n" style="color: #333;">src_p</span><span class="p">,</span> <span class="n" style="color: #333;">len</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -230,9 +244,9 @@ static void darshan_log_print_posix_description(int ver)</td>
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230
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">ver</span> <span class="o" style="font-weight: 600;"><=</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
231
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<td class="diff-line-num new_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="c"> <span class="p">{</span></span>
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232
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<td class="diff-line-num new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;"># WARNING: POSIX module log format version 1 has the following limitations:</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
233
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"# - <span class="idiff left right">Partial instrumentation of stdio stream I/O functions not parsable by Darshan versions >= 3.1.0</span></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
234
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"# <span class="idiff left right"> * Using darshan-logutils versions < 3.1.0, this data can be found in the following POSIX counters:</span></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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235
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<pre style="margin: 0;">-<span id="LC235" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"# <span class="idiff left right"> * POSIX_FOPENS, POSIX_FREADS, POSIX_FWRITES, POSIX_FSEEKS</span></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"# - <span class="idiff left right">Darshan version 3.1.0 and earlier had only partial instrumentation of stdio stream I/O functions.</span></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"# <span class="idiff left right">File records with stdio counters present will be omitted from output.</span></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"# <span class="idiff left right">Use darshan-logutils < 3.1.0 to retrieve those records.</span></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">ver</span> <span class="o" style="font-weight: 600;"><=</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="c"> <span class="p">{</span></span>
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