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<h3>
Shane Snyder pushed to branch master
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/604df8cc5cfab39b3151719b46deedfd2c7b2da0">604df8cc</a></strong>
<div>
<span>by Phil Carns</span>
<i>at 2018-01-05T12:14:13-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix __wrap_H5get_libversion undefined reference
- reported by Jialin Liu
- triggered by some HDF5 programs
- solved by eliminating incomplete wrapper mechanisms for H5get_libversion()
and invoking it directly (Darshan needs to use, not wrap, this
function)
</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/e0051df0d2f73dc3b0454569c5eed517aa723d14">e0051df0</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2018-01-08T14:12:53-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'dev-H5get_libversion_symbol' into 'master'
fix __wrap_H5get_libversion undefined reference
See merge request darshan/darshan!18</pre>
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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<a href="#8db652116ee33e5969aa0dc28d53c50c7fe13a3b">
darshan-runtime/lib/darshan-hdf5.c
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<a href="#78d99fb2f248179279f9bb37a312c0330f9e84fa">
darshan-runtime/share/ld-opts/darshan-hdf5-ld-opts
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<h4>Changes:</h4>
<li id="00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/61a1fa010be06a12e258d81715e8f1406e5ffec8...e0051df0d2f73dc3b0454569c5eed517aa723d14#00fe7828d56d7a3ee4030d6cea057cf13f50e70c"><strong>ChangeLog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Darshan Release Change Log</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">--------------------------</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">Darshan-3.1.5<span class="idiff left right">-pre1</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Darshan-3.1.5</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">=============</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">* modify Darshan MPI instrumentation method to intercept both MPI and</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> PMPI symbols to workaround MPI implementations that are calling</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,6 +19,8 @@ Darshan-3.1.5-pre1</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">* add support for DARSHAN_EXCLUDE_DIRS environment variable to</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> explicitly disable instrumentation for files in given</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> directories. Contributed by Cristian Simarro.</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">* correct "undefined reference to `__wrap_H5get_libversion'" linker failure</span>
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> when compiling some HDF5 programs, reported by Jialin Liu</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Darshan-3.1.4</span>
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">=============</span>
</pre>
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<li id="8db652116ee33e5969aa0dc28d53c50c7fe13a3b">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/61a1fa010be06a12e258d81715e8f1406e5ffec8...e0051df0d2f73dc3b0454569c5eed517aa723d14#8db652116ee33e5969aa0dc28d53c50c7fe13a3b"><strong>darshan-runtime/lib/darshan-hdf5.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,7 +36,11 @@ typedef int herr_t; //hf5-1.10.0p1: H5public.h:126</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="c"><span class="n" style="color: #333;">DARSHAN_FORWARD_DECL</span><span class="p">(</span><span class="n" style="color: #333;">H5Fcreate</span><span class="p">,</span> <span class="n" style="color: #333;">hid_t</span><span class="p">,</span> <span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">flags</span><span class="p">,</span> <span class="n" style="color: #333;">hid_t</span> <span class="n" style="color: #333;">create_plist</span><span class="p">,</span> <span class="n" style="color: #333;">hid_t</span> <span class="n" style="color: #333;">access_plist</span><span class="p">));</span></sp
an>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="c"><span class="n" style="color: #333;">DARSHAN_FORWARD_DECL</span><span class="p">(</span><span class="n" style="color: #333;">H5Fopen</span><span class="p">,</span> <span class="n" style="color: #333;">hid_t</span><span class="p">,</span> <span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">flags</span><span class="p">,</span> <span class="n" style="color: #333;">hid_t</span> <span class="n" style="color: #333;">access_plist</span><span class="p">));</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="c"><span class="n" style="color: #333;">DARSHAN_FORWARD_DECL</span><span class="p">(</span><span class="n" style="color: #333;">H5Fclose</span><span class="p">,</span> <span class="n" style="color: #333;">herr_t</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">hid_t</span> <span class="n" style="color: #333;">file_id</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="c"><span class="n" style="color: #333;">DARSHAN_FORWARD_DECL</span><span class="p">(</span><span class="n" style="color: #333;">H5get_libversion</span><span class="p">,</span> <span class="n" style="color: #333;">herr_t</span><span class="p">,</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">majnum</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">minnum</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">relnum</span><span class="p">));</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* prototype for HDF symbols that we will call directly from within other</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * wrappers if HDF is linked in</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="c"><span class="k" style="font-weight: 600;">extern</span> <span class="n" style="color: #333;">herr_t</span> <span class="n" style="color: #333;">H5get_libversion</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">majnum</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">minnum</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">relnum</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* structure that can track i/o stats for a given HDF5 file record at runtime */</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="c"><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">hdf5_file_record_ref</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,8 +126,7 @@ hid_t DARSHAN_DECL(H5Fcreate)(const char *filename, unsigned flags,</td>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">double</span> <span class="n" style="color: #333;">tm1</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">majnum</span><span class="p">,</span> <span class="n" style="color: #333;">minnum</span><span class="p">,</span> <span class="n" style="color: #333;">relnum</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="c"> <span class="n" style="color: #333;">MAP_OR_FAIL</span><span class="p">(</span><span class="n" style="color: #333;">H5get_libversion</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="c"> <span class="n" style="color: #333;">__real_H5get_libversion</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">majnum</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">minnum</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">relnum</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="c"> <span class="n" style="color: #333;">H5get_libversion</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">majnum</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">minnum</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">relnum</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __DARSHAN_ENABLE_HDF5110</span></span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">majnum</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">(</span><span class="n" style="color: #333;">majnum</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">minnum</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">10</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -171,8 +174,7 @@ hid_t DARSHAN_DECL(H5Fopen)(const char *filename, unsigned flags,</td>
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171
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">double</span> <span class="n" style="color: #333;">tm1</span><span class="p">;</span></span>
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172
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">majnum</span><span class="p">,</span> <span class="n" style="color: #333;">minnum</span><span class="p">,</span> <span class="n" style="color: #333;">relnum</span><span class="p">;</span></span>
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173
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="c"></span>
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174
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="c"> <span class="n" style="color: #333;">MAP_OR_FAIL</span><span class="p">(</span><span class="n" style="color: #333;">H5get_libversion</span><span class="p">);</span></span>
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175
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="c"> <span class="n" style="color: #333;">__real_H5get_libversion</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">majnum</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">minnum</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">relnum</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="c"> <span class="n" style="color: #333;">H5get_libversion</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">majnum</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">minnum</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">relnum</span><span class="p">);</span></span>
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176
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __DARSHAN_ENABLE_HDF5110</span></span>
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177
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">majnum</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">(</span><span class="n" style="color: #333;">majnum</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">minnum</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">10</span><span class="p">))</span></span>
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178
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,4 +2,3 @@</td>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">--wrap=H5Fcreate</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">--wrap=H5Fopen</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">--wrap=H5Fclose</span></pre>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">--wrap=H5get_libversion</span></pre>
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