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<h3>
Shane Snyder pushed to branch master
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/d8ede451d2bb30a7efb21809c8d7e1c784b17525">d8ede451</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2017-10-31T16:20:52-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog for darshan-3.1.5-pre1
</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/aeec95caf99e8246ba0bb41e2ee346cf684f9f47">aeec95ca</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2017-10-31T17:39:26-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add docs for new Cray regression harnesses
</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/2ef3a7294e87bda1b969c3d0c5eb0cc92ea2ee21">2ef3a729</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2017-10-31T17:45:44-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update docs to describe DARSHAN_EXCLUDE_DIRS
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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<li class="file-stats">
<a href="#c1f1275094e9957965ea40cf5852335b4164fd05">
darshan-runtime/doc/darshan-runtime.txt
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</li>
<li class="file-stats">
<a href="#915facd82ce15be6e8902e8becfe3cefa8b0a2a5">
darshan-test/regression/README.BG.ALCF.txt
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<li class="file-stats">
<a href="#5dee5d33707d2534f2f01cf1b91c11ea43e79c96">
<span class="new-file">
+
darshan-test/regression/README.CRAY.ALCF.txt
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<li class="file-stats">
<a href="#94b01972a26dc326636210a058fa7ad02d2e1f7a">
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darshan-test/regression/README.CRAY.NERSC.txt
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<h4>Changes:</h4>
<li id="00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/48dbd2e8f97e54f3d48870b55440dc64e0c7ec64...2ef3a7294e87bda1b969c3d0c5eb0cc92ea2ee21#00fe7828d56d7a3ee4030d6cea057cf13f50e70c"><strong>ChangeLog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,6 +2,24 @@</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Darshan Release Change Log</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">--------------------------</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Darshan-3.1.5-pre1</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">=============</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">* modify Darshan MPI instrumentation method to intercept both MPI and</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> PMPI symbols to workaround MPI implementations that are calling</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> PMPI routines directly (e.g., the Fortran bindings of OpenMPI2).</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> Contributed in part by Chris Zimmer.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">* add a new python utility for analzying DXT trace files (dxt_analyzer).</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> Contributed by Alex Sim.</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">* bug fix to disable Darshan module instrumentation after the</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Darshan shutdown procedure has began, an issue that was</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> leading to negative timers in some cases</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">* bug fix for autoconf ignoring specified libbz2 location. Contributed</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> by Glenn Lockwood.</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">* add regression tests harnesses for Cray systems at ALCF & NERSC</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">* add support for DARSHAN_EXCLUDE_DIRS environment variable to</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> explicitly disable instrumentation for files in given</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> directories. Contributed by Cristian Simarro.</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Darshan-3.1.4</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">=============</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">* bug fix to prevent darshan-parser segfault when parsing logs with</span>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/48dbd2e8f97e54f3d48870b55440dc64e0c7ec64...2ef3a7294e87bda1b969c3d0c5eb0cc92ea2ee21#c1f1275094e9957965ea40cf5852335b4164fd05"><strong>darshan-runtime/doc/darshan-runtime.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -555,6 +555,7 @@ behavior at runtime:</td>
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<pre style="margin: 0;"> <span id="LC555" class="line" lang="plaintext">* DARSHAN_LOGFILE: specifies the path (directory + Darshan log file name) to write the output Darshan log to. This overrides the default Darshan behavior of automatically generating a log file name and adding it to a log file directory formatted using darshan-mk-log-dirs script.</span>
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<pre style="margin: 0;"> <span id="LC556" class="line" lang="plaintext">* DARSHAN_MODMEM: specifies the maximum amount of memory (in MiB) Darshan instrumentation modules can collectively consume at runtime (if not specified, Darshan uses a default quota of 2 MiB).</span>
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<pre style="margin: 0;"> <span id="LC557" class="line" lang="plaintext">* DARSHAN_MMAP_LOGPATH: if Darshan's mmap log file mechanism is enabled, this variable specifies what path the mmap log files should be stored in (if not specified, log files will be stored in `/tmp`).</span>
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="plaintext">* DARSHAN_EXCLUDE_DIRS: specifies a list of comma-separated paths that Darshan will not instrument at runtime (in addition to Darshan's default blacklist)</span>
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<pre style="margin: 0;"> <span id="LC559" class="line" lang="plaintext">* DXT_ENABLE_IO_TRACE: setting this environment variable enables the DXT (Darshan eXtended Tracing) modules at runtime. Users can specify a numeric value for this variable to set the number of MiB to use for tracing per process; if no value is specified, Darshan will use a default value of 4 MiB.</span>
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<pre style="margin: 0;"> <span id="LC560" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC561" class="line" lang="plaintext">== Debugging</span>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/48dbd2e8f97e54f3d48870b55440dc64e0c7ec64...2ef3a7294e87bda1b969c3d0c5eb0cc92ea2ee21#915facd82ce15be6e8902e8becfe3cefa8b0a2a5"><strong>darshan-test/regression/README.BG.ALCF.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +12,7 @@ To run regression tests:</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> make install</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> # darshan util</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> ../configure --prefix=/home/carns/working/darshan/install</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> ../configure --prefix=/home/carns/working/darshan/install<span class="idiff left right">-cetus</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> make install</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">- start a screen session by running "screen"</span>
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<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/48dbd2e8f97e54f3d48870b55440dc64e0c7ec64...2ef3a7294e87bda1b969c3d0c5eb0cc92ea2ee21#5dee5d33707d2534f2f01cf1b91c11ea43e79c96"><strong>darshan-test/regression/README.CRAY.ALCF.txt</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">See README.txt for general instructions. This file contains notes for testing on the Cray platform @ the ALCF </span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">(more specifically: theta.alcf.anl.gov). This example assumes that you are using the Cray module</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">method to add instrumentation.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">To run regression tests:</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">- unload any existing darshan module in the environment and switch to gnu compilers</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> module unload darshan</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> module switch PrgEnv-intel PrgEnv-gnu</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">- compile and install both darshan-runtime and darshan-util in the same directory</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> examples:</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> # darshan runtime</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> ../configure --with-mem-align=64 --with-log-path=/projects/SSSPPg/carns/darshan-logs --prefix=/home/carns/working/darshan/install-theta --with-jobid-env=COBALT_JOBID --disable-cuserid --host=x86_64 CC=cc</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> make install</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> # darshan util</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> ../configure --prefix=/home/carns/working/darshan/install-theta</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> make install</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">- start a screen session by running "screen"</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> note: this is suggested because the tests may take a while to complete depending on scheduler </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> availability</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">- run regression tests</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> ./run-all.sh /home/carns/working/darshan/install-cetus /projects/SSSPPg/carns/darshan-test cray-module-alcf</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"></span></pre>
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<li id="94b01972a26dc326636210a058fa7ad02d2e1f7a">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/48dbd2e8f97e54f3d48870b55440dc64e0c7ec64...2ef3a7294e87bda1b969c3d0c5eb0cc92ea2ee21#94b01972a26dc326636210a058fa7ad02d2e1f7a"><strong>darshan-test/regression/README.CRAY.NERSC.txt</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">See README.txt for general instructions. This file contains notes for testing on the Cray platform @ NERSC</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">(more specifically: cori.nersc.gov). This example assumes that you are using the Cray module</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">method to add instrumentation.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">To run regression tests:</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">- unload any existing darshan module in the environment and switch to gnu compilers</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> module unload darshan</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> module switch PrgEnv-intel PrgEnv-gnu</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">- compile and install both darshan-runtime and darshan-util in the same directory</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> examples:</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> # darshan runtime</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> ../configure --with-mem-align=8 --with-log-path=/global/cscratch1/sd/ssnyder/darshan-logs --prefix=/global/homes/s/ssnyder/working/darshan/install-cori --with-jobid-env=SLURM_JOB_ID --disable-cuserid CC=cc</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> make install</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> # darshan util</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> ../configure --prefix=/global/homes/s/ssnyder/working/darshan/install-cori</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> make install</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">- start a screen session by running "screen"</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> note: this is suggested because the tests may take a while to complete depending on scheduler </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> availability</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">- run regression tests</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> ./run-all.sh /global/homes/s/ssnyder/working/darshan/install-cori /global/cscratch1/sd/ssnyder/darshan-test cray-module-nersc</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"></span></pre>
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