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<h3>
Shane Snyder pushed to branch master
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/d76496b2b34f76d88b528a5ac90a7e2626d8f534">d76496b2</a></strong>
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<span>by asim</span>
<i>at 2017-09-18T11:20:42-07:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">updated for dxt_analyzer from LBNL
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<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/565e5b24f140597a089378ca007b6cc2c24e2047">565e5b24</a></strong>
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<span>by asim</span>
<i>at 2017-09-18T11:21:45-07:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">updated for dxt_analyzer from LBNL
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<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/774b5d9426a02ddb3a88fbbc92a66ceace1ce8b6">774b5d94</a></strong>
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<span>by asim</span>
<i>at 2017-09-18T12:02:32-07:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">second update for dxt_analyzer from LBNL
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<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/09531f17e874a362950a9c43dde69a2401abcffd">09531f17</a></strong>
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<span>by Shane Snyder</span>
<i>at 2017-09-22T10:33:02-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'master' into 'master'
dxt_analyzer
See merge request !16</pre>
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<h4>3 changed files:</h4>
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<a href="#b6a3acb563ea14d8a61cbee81c0c3cc73474e781">
darshan-util/Makefile.in
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<a href="#70510ae723f4a35544f81699cdb256bc575b76fb">
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darshan-util/doc/dxt_analyzer.txt
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darshan-util/dxt_analyzer.py
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<h4>Changes:</h4>
<li id="b6a3acb563ea14d8a61cbee81c0c3cc73474e781">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/2d14002d939f478b24b9556946c3b5c78fd2fc6f...09531f17e874a362950a9c43dde69a2401abcffd#b6a3acb563ea14d8a61cbee81c0c3cc73474e781"><strong>darshan-util/Makefile.in</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -144,6 +144,7 @@ install:: all</td>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="make"> install <span class="nt" style="color: navy;">-m</span> 755 darshan-dxt-parser <span class="nv" style="color: teal;">$(bindir)</span></span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="make"> install <span class="nt" style="color: navy;">-m</span> 755 darshan-merge <span class="nv" style="color: teal;">$(bindir)</span></span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="make"> install <span class="nt" style="color: navy;">-m</span> 755 <span class="nv" style="color: teal;">$(srcdir)</span>/darshan-summary-per-file.sh <span class="nv" style="color: teal;">$(bindir)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="make"> install <span class="nt" style="color: navy;">-m</span> 755 dxt_analyzer.py <span class="nv" style="color: teal;">$(bindir)</span></span>
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<td class="diff-line-num new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="make"> install <span class="nt" style="color: navy;">-m</span> 755 libdarshan-util.a <span class="nv" style="color: teal;">$(libdir)</span></span>
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<td class="diff-line-num old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">ifeq</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">($(DARSHAN_ENABLE_SHARED),1)</span></span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">install</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-m</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">755</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">libdarshan-util.so</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(libdir)</span></span>
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<li id="70510ae723f4a35544f81699cdb256bc575b76fb">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/2d14002d939f478b24b9556946c3b5c78fd2fc6f...09531f17e874a362950a9c43dde69a2401abcffd#70510ae723f4a35544f81699cdb256bc575b76fb"><strong>darshan-util/doc/dxt_analyzer.txt</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"># Email questions to SDMSUPPORT@LBL.GOV</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"># Scientific Data Management Research Group</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"># Lawrence Berkeley National Laboratory</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">#</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"># last update on Mon Aug 7 08:47:28 PDT 2017</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">To plot the read or write activity from Darshan Extended Trace (DXT) logs.</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">% ./dxt_analyzer.py --help</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">usage: dxt_analyzer.py [-h] -i DXT_LOGNAME [-o SAVEFIG] [--show] [--read]</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> [--filemode] [-f FNAME]</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">io activity plot from dxt log</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">optional arguments:</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> -h, --help show this help message and exit</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> -i DXT_LOGNAME, --input DXT_LOGNAME</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> dxt log path</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> -o SAVEFIG, --save SAVEFIG</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> output file name for the plot</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> --show Show the plot rather than saving to a PDF</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> --read READ I/O action to be plotted. </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> Default is False for WRITE mode.</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> --filemode Single file mode (must be used with --fname). </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> Default is False for all files</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> -f FNAME, --fname FNAME</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> name of file to be plotted (must use with --filemode)</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">Example runs:</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">% python dxt_analyzer.py -i darshan_dxt-a.txt </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">% python dxt_analyzer.py -i darshan_dxt-a.txt \</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> --filemode -f /global/cscratch1/sd/asim/amrex/a24/plt00000.hdf5</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">% python dxt_analyzer.py -i darshan_dxt-d.txt \</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> -o dxt-d.pdf</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">% python dxt_analyzer.py -i darshan_dxt-df.txt </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">% python dxt_analyzer.py -i darshan_dxt-c.txt </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">% python dxt_analyzer.py -i darshan_dxt-v.txt </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">For more information on creating DXT logs, see:</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">http://www.mcs.anl.gov/research/projects/darshan/docs/darshan3-util.html#_darshan_dxt_parser </span></pre>
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<li id="5a1b23e7d655a4b1f532a4b541f0b992e316f84b">
<a href="https://xgitlab.cels.anl.gov/darshan/darshan/compare/2d14002d939f478b24b9556946c3b5c78fd2fc6f...09531f17e874a362950a9c43dde69a2401abcffd#5a1b23e7d655a4b1f532a4b541f0b992e316f84b"><strong>darshan-util/dxt_analyzer.py</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#!/usr/bin/env python2</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">###</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># *** Copyright Notice ***</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># dxt_analyzer.py </span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># Copyright (c) 2017, The Regents of the University of California, </span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># through Lawrence Berkeley National Laboratory (subject to receipt</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># of any required approvals from the U.S. Dept. of Energy). </span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># All rights reserved.</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># If you have questions about your rights to use or distribute this software, </span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># please contact Berkeley Lab's Innovation & Partnerships Office </span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># at IPO@lbl.gov.</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># NOTICE. This software was developed under funding from the </span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># U.S. Department of Energy. As such, the U.S. Government has been granted </span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># for itself and others acting on its behalf a paid-up, nonexclusive, </span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># irrevocable, worldwide license in the Software to reproduce, prepare </span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># derivative works, and perform publicly and display publicly. Beginning </span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># five (5) years after the date permission to assert copyright is obtained </span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># from the U.S. Department of Energy, and subject to any subsequent five (5) </span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># year renewals, the U.S. Government is granted for itself and others acting </span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in </span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># the Software to reproduce, prepare derivative works, distribute copies to </span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># the public, perform publicly and display publicly, and to permit others to </span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># do so.</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># Email questions to SDMSUPPORT@LBL.GOV</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># Scientific Data Management Research Group</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># Lawrence Berkeley National Laboratory</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># last update on Tue Aug 8 08:16:49 PDT 2017</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"><span class="s" style="color: #d14;">'''</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"><span class="s" style="color: #d14;">dxt_analyzer.py</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"><span class="s" style="color: #d14;">To plot the read or write activity from Darshan Extended Trace (DXT) logs.</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"><span class="s" style="color: #d14;">For more information on creating DXT logs, see:</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"><span class="s" style="color: #d14;">http://www.mcs.anl.gov/research/projects/darshan/docs/darshan3-util.html#_darshan_dxt_parser </span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"><span class="si" style="color: #d14;">% </span><span class="s" style="color: #d14;">./io_activitity_dxt.py --help</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"><span class="s" style="color: #d14;">usage: dxt_analyzer.py [-h] -i DXT_LOGNAME [-o SAVEFIG] [--show] [--read]</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"><span class="s" style="color: #d14;"> [--filemode] [-f FNAME]</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"><span class="s" style="color: #d14;">io activity plot from dxt log</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"><span class="s" style="color: #d14;">optional arguments:</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"><span class="s" style="color: #d14;"> -h, --help show this help message and exit</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"><span class="s" style="color: #d14;"> -i DXT_LOGNAME, --input DXT_LOGNAME</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"><span class="s" style="color: #d14;"> dxt log path</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"><span class="s" style="color: #d14;"> -o SAVEFIG, --save SAVEFIG</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"><span class="s" style="color: #d14;"> output file name for the plot</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="python"><span class="s" style="color: #d14;"> --show Show the plot rather than saving to a PDF</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="python"><span class="s" style="color: #d14;"> --read READ I/O action to be plotted. </span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="python"><span class="s" style="color: #d14;"> Default is False for WRITE mode.</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="python"><span class="s" style="color: #d14;"> --filemode Single file mode (must be used with --fname)</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="python"><span class="s" style="color: #d14;"> Default is False for all files</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="python"><span class="s" style="color: #d14;"> -f FNAME, --fname FNAME</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"><span class="s" style="color: #d14;"> name of file to be plotted (must use with --filemode)</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="python"></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="python"><span class="s" style="color: #d14;">e.g.</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="python"><span class="s" style="color: #d14;">python dxt_analyzer.py -i darshan_dxt-a.txt</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="python"><span class="s" style="color: #d14;">python dxt_analyzer.py -i darshan_dxt-a.txt </span><span class="se" style="color: #d14;">\</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python"><span class="s" style="color: #d14;"> --filemode -f /global/cscratch1/sd/asim/amrex/a24/plt00000.hdf5</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="python"><span class="s" style="color: #d14;">python dxt_analyzer.py -i darshan_dxt-c.txt</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python"><span class="s" style="color: #d14;">python dxt_analyzer.py -i darshan_dxt-d.txt -o dxt-d.pdf</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="python"><span class="s" style="color: #d14;">python dxt_analyzer.py -i darshan_dxt-df.txt</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="python"><span class="s" style="color: #d14;">python dxt_analyzer.py -i darshan_dxt-v.txt</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="python"></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="python"><span class="s" style="color: #d14;">'''</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="python"></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="python"><span class="kn" style="font-weight: bold;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: bold;">as</span> <span class="n" style="color: #333;">np</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="python"><span class="kn" style="font-weight: bold;">import</span> <span class="nn" style="color: #555;">matplotlib</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"><span class="n" style="color: #333;">matplotlib</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">use</span><span class="p">(</span><span class="s" style="color: #d14;">'PDF'</span><span class="p">)</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="python"><span class="kn" style="font-weight: bold;">import</span> <span class="nn" style="color: #555;">matplotlib.pyplot</span> <span class="k" style="font-weight: bold;">as</span> <span class="n" style="color: #333;">plt</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"><span class="kn" style="font-weight: bold;">import</span> <span class="nn" style="color: #555;">re</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python"><span class="kn" style="font-weight: bold;">import</span> <span class="nn" style="color: #555;">argparse</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="python"></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#------------------------------------------------------------------------------</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># Regular expression and helper funtion definitions</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#------------------------------------------------------------------------------</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="python"><span class="n" style="color: #333;">global_finfo</span> <span class="o" style="font-weight: bold;">=</span> <span class="p">{}</span> </span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#'filename':{'rw':[], 'mount':'', 'fs':'', 'stripe_size':-1, 'stripe_width':-1, 'OSTlist':[]}</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># Module rank write/read segment offset length start end OST</span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="python"><span class="n" style="color: #333;">POSIX_LOG_PATTERN</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">' (X_POSIX)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+(</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">S+)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">[</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s*([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">]</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.*'</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="python"><span class="n" style="color: #333;">POSIX_LOG_NO_OSTS</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">' (X_POSIX)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+(</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">S+)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)'</span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># Module rank write/read segment length start end </span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="python"><span class="n" style="color: #333;">MPIIO_LOG_PATTERN</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">' (X_MPIIO)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+(</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">S+)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+([+-]?</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+(?:</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)?)'</span></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="python"><span class="n" style="color: #333;">HEADER_PATTERN</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'(#</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+)(</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">S+):(</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">s+)(</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+)'</span></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="python"><span class="n" style="color: #333;">COMMENT_PATTERN_DXT</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'# </span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.*'</span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"><span class="n" style="color: #333;">USEFUL_COMMENT_PATTERN</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'# DXT,</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">.*'</span></span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"><span class="n" style="color: #333;">LISTNUM_PATTERN</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'(</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">d+.*)'</span></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python"><span class="n" style="color: #333;">header</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: bold;">.</span><span class="nb" style="color: #0086b3;">compile</span><span class="p">(</span><span class="n" style="color: #333;">HEADER_PATTERN</span><span class="p">)</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"><span class="n" style="color: #333;">validposix</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: bold;">.</span><span class="nb" style="color: #0086b3;">compile</span><span class="p">(</span><span class="n" style="color: #333;">POSIX_LOG_PATTERN</span><span class="p">)</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"><span class="n" style="color: #333;">posix_no_ost</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: bold;">.</span><span class="nb" style="color: #0086b3;">compile</span><span class="p">(</span><span class="n" style="color: #333;">POSIX_LOG_NO_OSTS</span><span class="p">)</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python"><span class="n" style="color: #333;">validmpiio</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: bold;">.</span><span class="nb" style="color: #0086b3;">compile</span><span class="p">(</span><span class="n" style="color: #333;">MPIIO_LOG_PATTERN</span><span class="p">)</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"><span class="n" style="color: #333;">comment_dxt</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: bold;">.</span><span class="nb" style="color: #0086b3;">compile</span><span class="p">(</span><span class="n" style="color: #333;">COMMENT_PATTERN_DXT</span><span class="p">)</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"><span class="n" style="color: #333;">use_comment</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: bold;">.</span><span class="nb" style="color: #0086b3;">compile</span><span class="p">(</span><span class="n" style="color: #333;">USEFUL_COMMENT_PATTERN</span><span class="p">)</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"><span class="n" style="color: #333;">listnumpattern</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: bold;">.</span><span class="nb" style="color: #0086b3;">compile</span><span class="p">(</span><span class="n" style="color: #333;">LISTNUM_PATTERN</span><span class="p">)</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="python"><span class="k" style="font-weight: bold;">def</span> <span class="nf" style="color: #900; font-weight: bold;">store_useful_comment</span><span class="p">(</span><span class="n" style="color: #333;">pieces</span><span class="p">,</span> <span class="n" style="color: #333;">finfo_dict</span><span class="p">,</span> <span class="n" style="color: #333;">curr_fname</span><span class="p">):</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="python"> <span class="s" style="color: #d14;">'''updates a file's dictionary entry using the pieces of a comment/header line from a DXT log'''</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="python"> <span class="n" style="color: #333;">attribute</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">pieces</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">'# DXT, '</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">)</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">attribute</span><span class="o" style="font-weight: bold;">==</span><span class="s" style="color: #d14;">'file_id'</span><span class="p">:</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="python"> <span class="n" style="color: #333;">curr_fname</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">pieces</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">' '</span><span class="p">,</span><span class="s" style="color: #d14;">''</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">rstrip</span><span class="p">(</span><span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span><span class="p">)</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">curr_fname</span> <span class="ow" style="font-weight: bold;">not</span> <span class="ow" style="font-weight: bold;">in</span> <span class="n" style="color: #333;">finfo_dict</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">keys</span><span class="p">():</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="python"> <span class="n" style="color: #333;">finfo_dict</span><span class="p">[</span><span class="n" style="color: #333;">curr_fname</span><span class="p">]</span> <span class="o" style="font-weight: bold;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">'mount'</span><span class="p">:</span><span class="s" style="color: #d14;">''</span><span class="p">,</span> <span class="s" style="color: #d14;">'fs'</span><span class="p">:</span><span class="s" style="color: #d14;">''</span><span class="p">,</span> <span class="s" style="color: #d14;">'stripe_size'</span><span class="p">:</span><span class="o" style="font-weight: bold;">-</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="s" style="color: #d14;">'stripe_width'</span><span class="p">:</span><span class="o" style="font-weight: bold;">-</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="s" style="color: #d14;">'OST_list'</span><span class="p">:[]}</span></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="n" style="color: #333;">curr_fname</span></span>
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="python"> <span class="k" style="font-weight: bold;">elif</span> <span class="n" style="color: #333;">attribute</span><span class="o" style="font-weight: bold;">==</span><span class="s" style="color: #d14;">'mnt_pt'</span><span class="p">:</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="python"> <span class="n" style="color: #333;">finfo_dict</span><span class="p">[</span><span class="n" style="color: #333;">curr_fname</span><span class="p">][</span><span class="s" style="color: #d14;">'mount'</span><span class="p">]</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">pieces</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">', fs_type'</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">' '</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">rstrip</span><span class="p">(</span><span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="python"> <span class="n" style="color: #333;">finfo_dict</span><span class="p">[</span><span class="n" style="color: #333;">curr_fname</span><span class="p">][</span><span class="s" style="color: #d14;">'fs'</span><span class="p">]</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">pieces</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">' '</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">rstrip</span><span class="p">(</span><span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="python"> <span class="k" style="font-weight: bold;">elif</span> <span class="n" style="color: #333;">attribute</span><span class="o" style="font-weight: bold;">==</span><span class="s" style="color: #d14;">'Lustre stripe_size'</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="python"> <span class="n" style="color: #333;">finfo_dict</span><span class="p">[</span><span class="n" style="color: #333;">curr_fname</span><span class="p">][</span><span class="s" style="color: #d14;">'stripe_size'</span><span class="p">]</span> <span class="o" style="font-weight: bold;">=</span> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">pieces</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">', Lustre stripe_count'</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">' '</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="python"> <span class="n" style="color: #333;">finfo_dict</span><span class="p">[</span><span class="n" style="color: #333;">curr_fname</span><span class="p">][</span><span class="s" style="color: #d14;">'stripe_width'</span><span class="p">]</span> <span class="o" style="font-weight: bold;">=</span> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">pieces</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">' '</span><span class="p">,</span><span class="s" style="color: #d14;">''</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="python"> <span class="k" style="font-weight: bold;">elif</span> <span class="n" style="color: #333;">attribute</span><span class="o" style="font-weight: bold;">==</span><span class="s" style="color: #d14;">'Lustre OST obdidx'</span><span class="p">:</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="python"> <span class="n" style="color: #333;">liststr</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">pieces</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">][</span><span class="mi" style="color: #099;">1</span><span class="p">:]</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="python"> <span class="n" style="color: #333;">listnums</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">listnumpattern</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">match</span><span class="p">(</span><span class="n" style="color: #333;">liststr</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">groups</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="python"> <span class="n" style="color: #333;">OSTlist</span> <span class="o" style="font-weight: bold;">=</span> <span class="p">[</span><span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">)</span> <span class="k" style="font-weight: bold;">for</span> <span class="n" style="color: #333;">x</span> <span class="ow" style="font-weight: bold;">in</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">findall</span><span class="p">(</span><span class="s" style="color: #d14;">r'\d+'</span><span class="p">,</span> <span class="n" style="color: #333;">listnums</span><span class="p">)]</span></span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="python"> <span class="n" style="color: #333;">finfo_dict</span><span class="p">[</span><span class="n" style="color: #333;">curr_fname</span><span class="p">][</span><span class="s" style="color: #d14;">'OST_list'</span><span class="p">]</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">OSTlist</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="n" style="color: #333;">curr_fname</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="python"></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="python"></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="python"><span class="k" style="font-weight: bold;">def</span> <span class="nf" style="color: #900; font-weight: bold;">parse_dxt_log_line</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">curr_fname</span><span class="p">,</span> <span class="n" style="color: #333;">finfo_dict</span><span class="p">):</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="python"> <span class="s" style="color: #d14;">'''takes a DXT log line and stores pertinent file metadata into a dictionary, and parses read/write trace data into a tuple'''</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="ow" style="font-weight: bold;">not</span> <span class="n" style="color: #333;">line</span><span class="p">:</span> <span class="k" style="font-weight: bold;">return</span> <span class="p">(</span><span class="n" style="color: #333;">curr_fname</span><span class="p">,</span> <span class="p">(),</span> <span class="o" style="font-weight: bold;">-</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="python"> <span class="n" style="color: #333;">pieces</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">line</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">":"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">comment_dxt</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">match</span><span class="p">(</span><span class="n" style="color: #333;">pieces</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">use_comment</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">match</span><span class="p">(</span><span class="n" style="color: #333;">pieces</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="python"> <span class="n" style="color: #333;">curr_fname</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">store_useful_comment</span><span class="p">(</span><span class="n" style="color: #333;">pieces</span><span class="p">,</span> <span class="n" style="color: #333;">finfo_dict</span><span class="p">,</span> <span class="n" style="color: #333;">curr_fname</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="p">(</span><span class="n" style="color: #333;">curr_fname</span><span class="p">,</span> <span class="p">(),</span> <span class="o" style="font-weight: bold;">-</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="python"> <span class="n" style="color: #333;">header_match</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">header</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">match</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">header_match</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="p">(</span><span class="n" style="color: #333;">curr_fname</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">header_match</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">),</span><span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">header_match</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">4</span><span class="p">))),</span> <span class="o" style="font-weight: bold;">-</span><span class="mi" style="color: #099;">11</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="python"> <span class="k" style="font-weight: bold;">else</span><span class="p">:</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="p">(</span><span class="n" style="color: #333;">curr_fname</span><span class="p">,</span> <span class="p">(),</span> <span class="o" style="font-weight: bold;">-</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">validposix</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">match</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">data</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="p">(</span><span class="n" style="color: #333;">curr_fname</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="python"> <span class="p">(</span></span>
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="python"> <span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">'X_'</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">)</span><span class="o" style="font-weight: bold;">+</span><span class="s" style="color: #d14;">'_'</span><span class="o" style="font-weight: bold;">+</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">upper</span><span class="p">()),</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="python"> <span class="p">(</span></span>
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<td class="diff-line-num new new_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="python"> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#rank</span></span>
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<td class="diff-line-num new new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="python"> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">6</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#length</span></span>
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<td class="diff-line-num new new_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="python"> <span class="nb" style="color: #0086b3;">float</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">7</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#start</span></span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="python"> <span class="nb" style="color: #0086b3;">float</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">8</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#end</span></span>
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<td class="diff-line-num new new_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="python"> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">9</span><span class="p">))</span> <span class="c" style="color: #998; font-style: italic;">#OST</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="python"> <span class="p">)</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="python"> <span class="p">),</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">posix_no_ost</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">match</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">data</span><span class="p">:</span></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="p">(</span><span class="n" style="color: #333;">curr_fname</span><span class="p">,</span></span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="python"> <span class="p">(</span></span>
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<td class="diff-line-num new new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="python"> <span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">'X_'</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">)</span><span class="o" style="font-weight: bold;">+</span><span class="s" style="color: #d14;">'_'</span><span class="o" style="font-weight: bold;">+</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">upper</span><span class="p">()),</span> </span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="python"> <span class="p">(</span></span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="python"> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#rank</span></span>
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<td class="diff-line-num new new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="python"> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">6</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#length</span></span>
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<td class="diff-line-num new new_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="python"> <span class="nb" style="color: #0086b3;">float</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">7</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#start</span></span>
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<td class="diff-line-num new new_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="python"> <span class="nb" style="color: #0086b3;">float</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">8</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#end</span></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="python"> <span class="o" style="font-weight: bold;">-</span><span class="mi" style="color: #099;">1</span> <span class="c" style="color: #998; font-style: italic;"># No OST</span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="python"> <span class="p">)</span></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="python"> <span class="p">),</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">validmpiio</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">match</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">data</span><span class="p">:</span></span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="p">(</span><span class="n" style="color: #333;">curr_fname</span><span class="p">,</span></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="python"> <span class="p">(</span></span>
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="python"> <span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">'X_'</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">)</span><span class="o" style="font-weight: bold;">+</span><span class="s" style="color: #d14;">'_'</span><span class="o" style="font-weight: bold;">+</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">upper</span><span class="p">()),</span> </span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="python"> <span class="p">(</span></span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="python"> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#rank</span></span>
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="python"> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#length</span></span>
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<td class="diff-line-num new new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="python"> <span class="nb" style="color: #0086b3;">float</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">6</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#start</span></span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="python"> <span class="nb" style="color: #0086b3;">float</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">7</span><span class="p">)),</span> <span class="c" style="color: #998; font-style: italic;">#end</span></span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="python"> <span class="p">)</span></span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="python"> <span class="p">),</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="p">(</span><span class="n" style="color: #333;">curr_fname</span><span class="p">,</span> <span class="p">(),</span> <span class="o" style="font-weight: bold;">-</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="python"></span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="python"></span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="python"><span class="k" style="font-weight: bold;">def</span> <span class="nf" style="color: #900; font-weight: bold;">get_verts_file</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">module</span><span class="p">,</span> <span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="p">):</span></span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="python"> <span class="s" style="color: #d14;">'''make a list of rectangle vertices to plot the posix/mpi read/write activity for each rank for a specific file'''</span></span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="python"> <span class="n" style="color: #333;">keyword</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">module</span><span class="o" style="font-weight: bold;">+</span><span class="s" style="color: #d14;">'_'</span><span class="o" style="font-weight: bold;">+</span><span class="n" style="color: #333;">action</span></span>
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<td class="diff-line-num new new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="python"> <span class="n" style="color: #333;">filedata</span> <span class="o" style="font-weight: bold;">=</span> <span class="nb" style="color: #0086b3;">map</span><span class="p">(</span><span class="k" style="font-weight: bold;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="nb" style="color: #0086b3;">filter</span><span class="p">(</span><span class="k" style="font-weight: bold;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: bold;">==</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">))</span></span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="python"> <span class="n" style="color: #333;">filtered</span> <span class="o" style="font-weight: bold;">=</span> <span class="nb" style="color: #0086b3;">map</span><span class="p">(</span><span class="k" style="font-weight: bold;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="nb" style="color: #0086b3;">filter</span><span class="p">(</span><span class="k" style="font-weight: bold;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: bold;">==</span><span class="n" style="color: #333;">keyword</span><span class="p">,</span> <span class="n" style="color: #333;">filedata</span><span class="p">))</span></span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="python"> <span class="n" style="color: #333;">activities</span> <span class="o" style="font-weight: bold;">=</span> <span class="nb" style="color: #0086b3;">map</span><span class="p">(</span><span class="k" style="font-weight: bold;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">])),</span> <span class="n" style="color: #333;">filtered</span><span class="p">)</span></span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="python"> <span class="n" style="color: #333;">verts</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">zeros</span><span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="mi" style="color: #099;">4</span><span class="p">,</span><span class="mi" style="color: #099;">2</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="python"> <span class="k" style="font-weight: bold;">for</span> <span class="n" style="color: #333;">entry</span> <span class="ow" style="font-weight: bold;">in</span> <span class="n" style="color: #333;">activities</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="python"> <span class="n" style="color: #333;">lx</span><span class="p">,</span><span class="n" style="color: #333;">rx</span><span class="p">,</span><span class="n" style="color: #333;">by</span><span class="p">,</span><span class="n" style="color: #333;">ty</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">entry</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">entry</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">][</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">entry</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: bold;">-</span> <span class="mf" style="color: #099;">0.5</span> <span class="p">,</span> <span class="n" style="color: #333;">entry</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: bold;">+</span> <span class="mf" style="color: #099;">0.5</span></span>
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="python"> <span class="n" style="color: #333;">newverts</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">array</span><span class="p">([((</span><span class="n" style="color: #333;">lx</span><span class="p">,</span><span class="n" style="color: #333;">by</span><span class="p">),</span> <span class="p">(</span><span class="n" style="color: #333;">lx</span><span class="p">,</span><span class="n" style="color: #333;">ty</span><span class="p">),</span> <span class="p">(</span><span class="n" style="color: #333;">rx</span><span class="p">,</span> <span class="n" style="color: #333;">ty</span><span class="p">),</span> <span class="p">(</span><span class="n" style="color: #333;">rx</span><span class="p">,</span> <span class="n" style="color: #333;">by</span><span class="p">))])</span></span>
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="python"> <span class="n" style="color: #333;">verts</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">((</span><span class="n" style="color: #333;">verts</span><span class="p">,</span> <span class="n" style="color: #333;">newverts</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="n" style="color: #333;">verts</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:]</span></span>
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="python"><span class="k" style="font-weight: bold;">def</span> <span class="nf" style="color: #900; font-weight: bold;">get_verts_all</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">module</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="python"> <span class="s" style="color: #d14;">'''make a list of rectangle vertices to plot the posix/mpi read/write activity for each rank'''</span></span>
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="python"> <span class="n" style="color: #333;">keyword</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">module</span><span class="o" style="font-weight: bold;">+</span><span class="s" style="color: #d14;">'_'</span><span class="o" style="font-weight: bold;">+</span><span class="n" style="color: #333;">action</span></span>
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="python"> <span class="n" style="color: #333;">IOdata</span> <span class="o" style="font-weight: bold;">=</span> <span class="nb" style="color: #0086b3;">map</span><span class="p">(</span><span class="k" style="font-weight: bold;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">data</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="python"> <span class="n" style="color: #333;">filtered</span> <span class="o" style="font-weight: bold;">=</span> <span class="nb" style="color: #0086b3;">map</span><span class="p">(</span><span class="k" style="font-weight: bold;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="nb" style="color: #0086b3;">filter</span><span class="p">(</span><span class="k" style="font-weight: bold;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: bold;">==</span><span class="n" style="color: #333;">keyword</span><span class="p">,</span> <span class="n" style="color: #333;">IOdata</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="python"> <span class="n" style="color: #333;">activities</span> <span class="o" style="font-weight: bold;">=</span> <span class="nb" style="color: #0086b3;">map</span><span class="p">(</span><span class="k" style="font-weight: bold;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">])),</span> <span class="n" style="color: #333;">filtered</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="python"> <span class="n" style="color: #333;">verts</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">zeros</span><span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="mi" style="color: #099;">4</span><span class="p">,</span><span class="mi" style="color: #099;">2</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="python"> <span class="k" style="font-weight: bold;">for</span> <span class="n" style="color: #333;">entry</span> <span class="ow" style="font-weight: bold;">in</span> <span class="n" style="color: #333;">activities</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="python"> <span class="n" style="color: #333;">lx</span><span class="p">,</span><span class="n" style="color: #333;">rx</span><span class="p">,</span><span class="n" style="color: #333;">by</span><span class="p">,</span><span class="n" style="color: #333;">ty</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">entry</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">entry</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">][</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">entry</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: bold;">-</span> <span class="mf" style="color: #099;">0.5</span> <span class="p">,</span> <span class="n" style="color: #333;">entry</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: bold;">+</span> <span class="mf" style="color: #099;">0.5</span></span>
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="python"> <span class="n" style="color: #333;">newverts</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">array</span><span class="p">([((</span><span class="n" style="color: #333;">lx</span><span class="p">,</span><span class="n" style="color: #333;">by</span><span class="p">),</span> <span class="p">(</span><span class="n" style="color: #333;">lx</span><span class="p">,</span><span class="n" style="color: #333;">ty</span><span class="p">),</span> <span class="p">(</span><span class="n" style="color: #333;">rx</span><span class="p">,</span> <span class="n" style="color: #333;">ty</span><span class="p">),</span> <span class="p">(</span><span class="n" style="color: #333;">rx</span><span class="p">,</span> <span class="n" style="color: #333;">by</span><span class="p">))])</span></span>
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="python"> <span class="n" style="color: #333;">verts</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">((</span><span class="n" style="color: #333;">verts</span><span class="p">,</span> <span class="n" style="color: #333;">newverts</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="python"> <span class="k" style="font-weight: bold;">return</span> <span class="n" style="color: #333;">verts</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:]</span></span>
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#------------------------------------------------------------------------------</span></span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># Set variables and create plots</span></span>
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#------------------------------------------------------------------------------</span></span>
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># Variables to be set by user</span></span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># name of DXT log file</span></span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="python"><span class="n" style="color: #333;">dxt_logname</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'./darshan_dxt-5967365.txt'</span> </span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># create plot for a specific file (mode='file') or for all files (mode='all')</span></span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="python"><span class="n" style="color: #333;">singlefile_mode</span> <span class="o" style="font-weight: bold;">=</span> <span class="bp" style="color: #999;">False</span> <span class="c" style="color: #998; font-style: italic;"># for 'all' </span></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="python"><span class="n" style="color: #333;">mode</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'all'</span> </span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># name of file to be plotted (must use with mode='file')</span></span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="python"><span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'/global/cscratch1/sd/junmin/heatTxf.n64.s32/ph5.4096.n128s64.t1.h5'</span></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># FLAG for READ I/O action to be plotted.</span></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="python"><span class="n" style="color: #333;">read_flag</span> <span class="o" style="font-weight: bold;">=</span> <span class="bp" style="color: #999;">False</span> <span class="c" style="color: #998; font-style: italic;"># for READ action </span></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="python"><span class="n" style="color: #333;">action</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'WRITE'</span> </span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># filename to save the plot (must end with .pdf).</span></span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># showflag takes priority than savefig.</span></span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="python"><span class="n" style="color: #333;">showflag</span> <span class="o" style="font-weight: bold;">=</span> <span class="bp" style="color: #999;">False</span> <span class="c" style="color: #998; font-style: italic;"># If you do not want to save, set this to True. </span></span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="python"><span class="n" style="color: #333;">savefig</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'dxt_plot.pdf'</span> </span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="python"><span class="n" style="color: #333;">parser</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">argparse</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">ArgumentParser</span><span class="p">(</span><span class="n" style="color: #333;">description</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">'io activity plot from dxt log'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="python"><span class="n" style="color: #333;">parser</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span><span class="s" style="color: #d14;">"-i"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--input"</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"store"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"dxt_logname"</span><span class="p">,</span> <span class="n" style="color: #333;">required</span><span class="o" style="font-weight: bold;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"dxt log path"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="python"><span class="n" style="color: #333;">parser</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span><span class="s" style="color: #d14;">"-o"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--save"</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"store"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"savefig"</span><span class="p">,</span> <span class="n" style="color: #333;">required</span><span class="o" style="font-weight: bold;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"output file name for the plot"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="python"><span class="n" style="color: #333;">parser</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span><span class="s" style="color: #d14;">"--show"</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"store_true"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"showflag"</span><span class="p">,</span> <span class="n" style="color: #333;">required</span><span class="o" style="font-weight: bold;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"Show the plot rather than saving to a PDF"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="python"><span class="n" style="color: #333;">parser</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span><span class="s" style="color: #d14;">"--read"</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"store_true"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"read_flag"</span><span class="p">,</span> <span class="n" style="color: #333;">required</span><span class="o" style="font-weight: bold;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"READ I/O action to be plotted. Default is False for WRITE mode."</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="python"><span class="n" style="color: #333;">parser</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span><span class="s" style="color: #d14;">"--filemode"</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"store_true"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"singlefile_mode"</span><span class="p">,</span> <span class="n" style="color: #333;">required</span><span class="o" style="font-weight: bold;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"Single file mode (must be used with --fname). Default is False for all files"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="python"><span class="n" style="color: #333;">parser</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span><span class="s" style="color: #d14;">"-f"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--fname"</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"store"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"fname"</span><span class="p">,</span> <span class="n" style="color: #333;">required</span><span class="o" style="font-weight: bold;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">"name of file to be plotted (must use with --filemode)"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#args = parser.parse_args(['-l', '/Users/asim/Desktop/simcodes/vpic/runs/ttest/junmin-darshan_dxt-5967365.txt', </span></span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;">#'--save', 'dxt_plot.pdf'])</span></span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="python"><span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">parser</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">parse_args</span><span class="p">()</span> <span class="c" style="color: #998; font-style: italic;"># uncomment this line for general use</span></span>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="python"><span class="n" style="color: #333;">dxt_logname</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">dxt_logname</span></span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="python"><span class="k" style="font-weight: bold;">if</span> <span class="p">(</span><span class="n" style="color: #333;">args</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">savefig</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="python"> <span class="n" style="color: #333;">savefig</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">savefig</span></span>
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248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="python"><span class="k" style="font-weight: bold;">if</span> <span class="p">(</span><span class="n" style="color: #333;">args</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">showflag</span><span class="p">):</span></span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="python"> <span class="n" style="color: #333;">showflag</span> <span class="o" style="font-weight: bold;">=</span> <span class="bp" style="color: #999;">True</span></span>
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250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="python"><span class="k" style="font-weight: bold;">if</span> <span class="p">(</span><span class="n" style="color: #333;">args</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">read_flag</span><span class="p">):</span> </span>
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251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="python"> <span class="n" style="color: #333;">read_flag</span> <span class="o" style="font-weight: bold;">=</span> <span class="bp" style="color: #999;">True</span></span>
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252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="python"> <span class="n" style="color: #333;">action</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'READ'</span></span>
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253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="python"><span class="k" style="font-weight: bold;">if</span> <span class="p">(</span><span class="n" style="color: #333;">args</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">singlefile_mode</span><span class="p">):</span> </span>
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254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="python"> <span class="n" style="color: #333;">singlefile_mode</span> <span class="o" style="font-weight: bold;">=</span> <span class="bp" style="color: #999;">True</span></span>
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255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="python"> <span class="n" style="color: #333;">mode</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">'file'</span></span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">fname</span></span>
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257
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="python"> </span>
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258
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="python"></span>
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259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="python"><span class="k" style="font-weight: bold;">with</span> <span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">dxt_logname</span><span class="p">)</span> <span class="k" style="font-weight: bold;">as</span> <span class="n" style="color: #333;">infile</span><span class="p">:</span></span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="python"> <span class="n" style="color: #333;">finfo_dict</span> <span class="o" style="font-weight: bold;">=</span> <span class="p">{}</span></span>
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261
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="python"> <span class="n" style="color: #333;">curr_fname</span> <span class="o" style="font-weight: bold;">=</span> <span class="s" style="color: #d14;">''</span></span>
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262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="python"> <span class="n" style="color: #333;">logdata</span> <span class="o" style="font-weight: bold;">=</span> <span class="p">[]</span></span>
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263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="python"> <span class="k" style="font-weight: bold;">for</span> <span class="n" style="color: #333;">line</span> <span class="ow" style="font-weight: bold;">in</span> <span class="n" style="color: #333;">infile</span><span class="p">:</span></span>
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="python"> <span class="n" style="color: #333;">curr_fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">flag</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">parse_dxt_log_line</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">curr_fname</span><span class="p">,</span> <span class="n" style="color: #333;">finfo_dict</span><span class="p">)</span></span>
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265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">flag</span> <span class="o" style="font-weight: bold;">==</span> <span class="o" style="font-weight: bold;">-</span><span class="mi" style="color: #099;">11</span><span class="p">:</span></span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="python"> <span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">,</span><span class="n" style="color: #333;">v</span><span class="p">)</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">data</span></span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="python"> <span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: bold;">==</span> <span class="s" style="color: #d14;">'jobid'</span><span class="p">:</span> <span class="n" style="color: #333;">jobid</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">v</span></span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="python"> <span class="k" style="font-weight: bold;">elif</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: bold;">==</span> <span class="s" style="color: #d14;">'start_time'</span><span class="p">:</span> <span class="n" style="color: #333;">start_time</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">v</span></span>
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<td class="diff-line-num new new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="python"> <span class="k" style="font-weight: bold;">elif</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: bold;">==</span> <span class="s" style="color: #d14;">'end_time'</span><span class="p">:</span> <span class="n" style="color: #333;">end_time</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">v</span></span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="python"> <span class="k" style="font-weight: bold;">elif</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: bold;">==</span> <span class="s" style="color: #d14;">'nprocs'</span><span class="p">:</span> <span class="n" style="color: #333;">nprocs</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">v</span></span>
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<td class="diff-line-num new new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="python"> <span class="k" style="font-weight: bold;">elif</span> <span class="n" style="color: #333;">flag</span> <span class="o" style="font-weight: bold;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">:</span></span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="python"> <span class="n" style="color: #333;">logdata</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">append</span><span class="p">((</span><span class="n" style="color: #333;">curr_fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">))</span></span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="python"></span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="python"><span class="n" style="color: #333;">fig</span><span class="p">,</span> <span class="n" style="color: #333;">ax</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">plt</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">subplots</span><span class="p">(</span><span class="n" style="color: #333;">dpi</span><span class="o" style="font-weight: bold;">=</span><span class="mi" style="color: #099;">150</span><span class="p">)</span></span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="python"></span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="python"><span class="k" style="font-weight: bold;">if</span> <span class="n" style="color: #333;">mode</span><span class="o" style="font-weight: bold;">==</span><span class="s" style="color: #d14;">'file'</span><span class="p">:</span></span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="python"> <span class="n" style="color: #333;">mpiio_verts</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">get_verts_file</span><span class="p">(</span><span class="n" style="color: #333;">logdata</span><span class="p">,</span> <span class="s" style="color: #d14;">'MPIIO'</span><span class="p">,</span> <span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="p">)</span></span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="python"> <span class="n" style="color: #333;">mpiio_collec</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">matplotlib</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">collections</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">PolyCollection</span><span class="p">(</span><span class="n" style="color: #333;">mpiio_verts</span><span class="p">,</span> <span class="n" style="color: #333;">facecolor</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">'blue'</span><span class="p">,</span> <span class="n" style="color: #333;">edgecolor</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">'blue'</span><span class="p">)</span></span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="python"> <span class="n" style="color: #333;">posix_verts</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">get_verts_file</span><span class="p">(</span><span class="n" style="color: #333;">logdata</span><span class="p">,</span> <span class="s" style="color: #d14;">'POSIX'</span><span class="p">,</span> <span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="p">)</span></span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="python"> <span class="n" style="color: #333;">posix_collec</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">matplotlib</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">collections</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">PolyCollection</span><span class="p">(</span><span class="n" style="color: #333;">posix_verts</span><span class="p">,</span> <span class="n" style="color: #333;">facecolor</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">'red'</span><span class="p">,</span> <span class="n" style="color: #333;">edgecolor</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">'red'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="python"> <span class="n" style="color: #333;">title</span> <span class="o" style="font-weight: bold;">=</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">jobid</span><span class="p">)</span><span class="o" style="font-weight: bold;">+</span><span class="s" style="color: #d14;">'_'</span><span class="o" style="font-weight: bold;">+</span><span class="n" style="color: #333;">fname</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">'/'</span><span class="p">)</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">pop</span><span class="p">()</span><span class="o" style="font-weight: bold;">+</span><span class="s" style="color: #d14;">'_'</span><span class="o" style="font-weight: bold;">+</span><span class="n" style="color: #333;">action</span><span class="o" style="font-weight: bold;">+</span><span class="s" style="color: #d14;">'_activity'</span></span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="python"><span class="k" style="font-weight: bold;">else</span> <span class="p">:</span> <span class="c" style="color: #998; font-style: italic;"># mode=='all'</span></span>
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283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="python"> <span class="n" style="color: #333;">mpiio_verts</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">get_verts_all</span><span class="p">(</span><span class="n" style="color: #333;">logdata</span><span class="p">,</span> <span class="s" style="color: #d14;">'MPIIO'</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="python"> <span class="n" style="color: #333;">mpiio_collec</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">matplotlib</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">collections</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">PolyCollection</span><span class="p">(</span><span class="n" style="color: #333;">mpiio_verts</span><span class="p">,</span> <span class="n" style="color: #333;">facecolor</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">'blue'</span><span class="p">,</span> <span class="n" style="color: #333;">edgecolor</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">'blue'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="python"> <span class="n" style="color: #333;">posix_verts</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">get_verts_all</span><span class="p">(</span><span class="n" style="color: #333;">logdata</span><span class="p">,</span> <span class="s" style="color: #d14;">'POSIX'</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="python"> <span class="n" style="color: #333;">posix_collec</span> <span class="o" style="font-weight: bold;">=</span> <span class="n" style="color: #333;">matplotlib</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">collections</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">PolyCollection</span><span class="p">(</span><span class="n" style="color: #333;">posix_verts</span><span class="p">,</span> <span class="n" style="color: #333;">facecolor</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">'red'</span><span class="p">,</span> <span class="n" style="color: #333;">edgecolor</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">'red'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="python"> <span class="n" style="color: #333;">title</span> <span class="o" style="font-weight: bold;">=</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">jobid</span><span class="p">)</span><span class="o" style="font-weight: bold;">+</span><span class="s" style="color: #d14;">'_'</span><span class="o" style="font-weight: bold;">+</span><span class="n" style="color: #333;">action</span><span class="o" style="font-weight: bold;">+</span><span class="s" style="color: #d14;">'_activity'</span></span>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="python"></span>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="python"></span>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="python"><span class="n" style="color: #333;">ax</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">add_collection</span><span class="p">(</span><span class="n" style="color: #333;">mpiio_collec</span><span class="p">)</span></span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="python"><span class="n" style="color: #333;">ax</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">add_collection</span><span class="p">(</span><span class="n" style="color: #333;">posix_collec</span><span class="p">)</span></span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="python"><span class="n" style="color: #333;">ax</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">autoscale</span><span class="p">()</span></span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="python"><span class="n" style="color: #333;">plt</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">ylabel</span><span class="p">(</span><span class="s" style="color: #d14;">"MPI rank"</span><span class="p">)</span></span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="python"><span class="n" style="color: #333;">plt</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">xlabel</span><span class="p">(</span><span class="s" style="color: #d14;">"Time (s)"</span><span class="p">)</span></span>
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295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="python"><span class="n" style="color: #333;">plt</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">title</span><span class="p">(</span><span class="n" style="color: #333;">title</span><span class="p">)</span></span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="python"><span class="k" style="font-weight: bold;">if</span> <span class="p">(</span><span class="n" style="color: #333;">showflag</span><span class="p">):</span></span>
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297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="python"> <span class="n" style="color: #333;">plt</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">show</span><span class="p">()</span></span>
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298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="python"><span class="k" style="font-weight: bold;">else</span><span class="p">:</span></span>
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299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="python"> <span class="n" style="color: #333;">plt</span><span class="o" style="font-weight: bold;">.</span><span class="n" style="color: #333;">savefig</span><span class="p">(</span><span class="n" style="color: #333;">savefig</span><span class="p">,</span> <span class="n" style="color: #333;">format</span><span class="o" style="font-weight: bold;">=</span><span class="s" style="color: #d14;">'pdf'</span><span class="p">)</span></span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="python"></span></pre>
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