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<h3>
Shane Snyder pushed to branch mmap-dev
at <a href="https://xgitlab.cels.anl.gov/darshan/darshan">darshan / darshan</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/92ef4cdd30b0bee6c27a193821dbdf5881d35d31">92ef4cdd</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-01-20T11:08:32-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">fix some small configure bugs for cray systems</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/d7c2e81c1bd8f5c84bc564d9b61a1da95fa4a8e1">d7c2e81c</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-01-21T16:15:41-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">small darshan-runtime documentation changes</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/2e9124099ae0471b9953f3c1ab27e30591823c5b">2e912409</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-01-27T16:15:30-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">add benchmarking hooks for generating logs</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/f0278cc11ae5ba716f2c464f1cbe525b60520e97">f0278cc1</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-01-28T13:06:42-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">bug fix to unregister modules when shutting down</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/b6ba418f51d89b5a016f727126e0bf5ea93a2e91">b6ba418f</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-01-28T11:14:09-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">bug fix for resolving mpi_barrier for shared exes</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/e37c25dfadee839095feb7d6780f0beffcf27608">e37c25df</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-01-29T10:16:38-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">back out unregister of modules at shutdown</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/75bd30201d6b1cb374508fc4ccd7c87ce1a757e5">75bd3020</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-02-04T17:57:12-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">small reorg of darshan init code
this reorganization prevents darshan from being "enabled"
(i.e., accessible to modules) until the initialization
has completely finished.</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/48fd8632c311a5a57d92e50b000377f871928737">48fd8632</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-02-10T11:24:37-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">reorganize ld-opts and fix cray/fortran bug</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/18fa80f179c13e1d596b1d1a7352d73eeb66af88">18fa80f1</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-02-11T08:54:29-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">fix last commit to work on out of tree builds</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/919fe4a9a14845d55cc535bc7cc8a129a299a800">919fe4a9</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-02-15T16:47:36-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">cleanup darshan-test directory
moved most test programs and previous darshan output
to the 2.x directory</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/e4a2073026a7ff6b03d5bc07936e25befd1b8ca1">e4a20730</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-02-15T16:48:50-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">forgot to add 3 files to darshan-test/2.x</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/f6137524db0f85392411b7f4ab64c69f9f25ea6f">f6137524</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-02-19T09:57:37-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">bug fix in resetting of darshan mount info</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/4a743c81b6c1cd7412a8114a6cb9632c2c01ba27">4a743c81</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-02-19T10:23:48-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">forgot to undefine hdf5/ncmpi symbols in ldopts</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/0a6399f3acde4614a3adf9453505ed3d3e93b0ad">0a6399f3</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-02-22T12:52:34-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">bug fix in darhsan-config linker options
Since we had to modify HDF5/PnetCDF linker flags to work on Cray
by undefining appropriate symbols, we need to update the linker
options used in darshan-config. darshan-config linker options need
to include the stubs libraries and use '--start-group' and
'--end-group' flags to resolve the symbols correctly</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/47a6c64a63c94e6c8bec850abfa7633bdb3994cf">47a6c64a</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-02-22T12:52:35-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">bug fix in reduction of min nonzero counters</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/07ff011f1df65710745a931a17ada915dce746c8">07ff011f</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-02-22T15:54:05-06:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">ignore i/o to paths in /var/ directory</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/f2293a81bb77ddf2b856ef349f7877bbcb4b1e8d">f2293a81</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-14T16:08:28-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">fix compile warnings for uninit timers</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/b4cc833cf1abc58954ba302b56cd53e69c91630c">b4cc833c</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-14T16:08:28-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">bug fix in resolving MPI_Barrrier in shared lib</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/6e96d134ae603f778f9433f44284c5ed9d5cb823">6e96d134</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-18T14:38:37-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">regression tests now catch LDPRELOAD symbol errors</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/eaf1d8dd9b3cd729e851ec5415faa5513a126b49">eaf1d8dd</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-18T14:38:37-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">update release checklist to refer to gitlab</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/56a5aab6dc13e9daef6e4dd5274063911af7de6b">56a5aab6</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-18T14:38:37-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">updated configure to reference 3.0.0 version</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/f139502fbaec5576ad4ea76b29477b82755d6121">f139502f</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-18T14:38:37-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">updated ChangeLog for 3.0.0 release</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/ce53fdd5dd4b95419d96e2f45b9c9ec977c67d6c">ce53fdd5</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-18T15:50:09-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">bug fix in regression test condition check</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/63512a55b90b9a9fbc7d4b184cb2e6f30d8fe608">63512a55</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-24T19:25:44+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">change bg regression to use radix-io repo</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/fd0a94137c377faae0d9a16233774a48ff7a2db8">fd0a9413</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-28T11:50:21-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">update regression scripts to use .darshan output</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/edb0a0b0f285829dd55b259908d383378200a823">edb0a0b0</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-28T11:50:21-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">add example output logs for x86_64 & ppc64</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/6f7229a376657317aae03999284ddc8e0c77ff06">6f7229a3</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-28T11:50:21-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">fix makefile clean to remove darshan-diff</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/a5778368a7334baa6616571f5346e3004ce360b9">a5778368</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-28T11:50:21-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">update documentation for darshan-runtime component
Darshan now provides debugging tips for cases where log files
are not generated.</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/8f3e3c9e371dbdac32fca29392eb1b22766c6f36">8f3e3c9e</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-28T11:50:21-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">Updated ChangeLog prior to 3.0.0 offiicial release</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/bd99f40154c9d9479d388dd2dc301945ca9764af">bd99f401</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-03-28T12:40:20-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">install null-log-format when building darshan-util
Otherwise, compile errors are generated when building an external
tool that uses the darshan-logutils api/library.</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/c5f7703a0b162a918ca82c3d3ca57ce3ef5553b2">c5f7703a</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-04-14T11:23:36-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">make limits.h include more portable</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/1eb2a5e4d71f390269143c7147a34f1d0a8377a3">1eb2a5e4</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-04-26T23:02:21-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">modify darshan-logutils to sort mount info
mount information is now sorted in order of descending mount
point lengths to fix a bug in matching file names to mount
points. the longest mount point string which matches the file
name is the corresponding mount. this change requires slight
changes to the darshan-logutils API, but does not modify the
log file format</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/856982506c577054ee0d3a027df7d88944e2050e">85698250</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-04-27T16:29:51+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">bug fix in bzip2 configure check</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/f88ebef63933df7d3c2697ed5c7dbbb413a19f0b">f88ebef6</a></strong>
<div>
<span>by Phil Carns</span>
<i>at 2016-05-01T07:57:38-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">fix minor potential bug in open timestamp
- be careful to record start timestamp of first open to start rather
than start timestamp of first open to complete</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/2faf24600acfb7bece70bd134183ae53b06e53c1">2faf2460</a></strong>
<div>
<span>by Phil Carns</span>
<i>at 2016-05-01T09:55:22-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">possible bug fix to io start timestamps
- read and write start timestamps should record start timestamp of first
read/write to *begin*, not start timestamp of first read/write to
complete
- mirrors earlier fix to open timestamps</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/a3b2cfb9aaa057df2487149025b2a0fd0b67d9a1">a3b2cfb9</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-04T13:22:27-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">fix perl scripts to get perl bin from env</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/4f1dbfc794d2fcd02b9fcb36115a90084f11c886">4f1dbfc7</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-12T09:49:38-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">fix typos in fortran env vars in runtime docs</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/f75b434949820b98d6f2fd8bca21f378272ef28c">f75b4349</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-12T17:13:29-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">fortran compiler generator autodetects mpich libs
this functionality is helpful especially on mira/cetus where
the mpich libraries are named depending on the fortran version
and the type of compiler being used (gcc, xl, etc.).</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/b41c9d63248117c83c5c6165b39e77403d3277dc">b41c9d63</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-13T10:38:56-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">cxx compiler generators autodetect mpich lib name</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/5e1a0963a498aebfa583d4b653561f1fd29c6b59">5e1a0963</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-16T14:20:38-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">bug fix in agg_perf_by_slowest perf calculation
this calculation was inadvertently accounting for metadata time
twice. also, clarified timing descriptions for slowest unique
file perf calculations.</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/9b2600e67f02aadea666df70f29f9ff59294cf04">9b2600e6</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-19T17:41:46+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">bug fix in fortran compiler generator</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/7610c2fb8b0e2dd7372ee0f42a7c5b3be31c318f">7610c2fb</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-19T12:45:25-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">add (mpiio or posix) perf. est. to summary graphs</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/534a0e1d3f5e5b4dcad65c5df62b4466331f8f84">534a0e1d</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-20T10:08:03-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">add perf estimate to job summary graphs</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/0979cfd10872b03dbae2c430b7b05fc0f8627be5">0979cfd1</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-20T10:43:02-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">update changelog for 3.0.1 release</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/76ae5f6b7a556dc0709b9f458979f82818d2154f">76ae5f6b</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-20T10:51:01-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">update darshan version in runtime/util configure</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/08855b48d58e095ff0a31d8d4861db857fb72566">08855b48</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-05-20T12:40:46-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">example output logs for x86 and ppc</pre>
</li>
<li>
<strong><a href="https://xgitlab.cels.anl.gov/darshan/darshan/commit/a974efeeec04c089f944addb04dd07028d3b3431">a974efee</a></strong>
<div>
<span>by Shane Snyder</span>
<i>at 2016-06-10T16:05:28-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap">Merge branch 'master' into mmap-dev
Conflicts:
darshan-runtime/Makefile.in
darshan-runtime/configure
darshan-runtime/configure.in
darshan-runtime/darshan.h
darshan-runtime/lib/darshan-core.c
darshan-runtime/lib/darshan-hdf5.c
darshan-runtime/lib/darshan-mpiio.c
darshan-runtime/lib/darshan-pnetcdf.c
darshan-runtime/lib/darshan-posix.c
darshan-util/Makefile.in
darshan-util/darshan-convert.c
darshan-util/darshan-logutils.c
darshan-util/darshan-logutils.h
darshan-util/darshan-parser.c</pre>
</li>
</ul>
<h4>100 changed files:</h4>
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